data_4HCY
#
_model_server_result.job_id            fc0kBUvR0XZK-04u9R3Uwg 
_model_server_result.datetime_utc      '2024-11-24 15:33:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hcy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":401}' 
#
_entry.id    4HCY 
#
_exptl.entry_id    4HCY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              263.359 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HCY 
_cell.length_a            104.09 
_cell.length_b            201.86 
_cell.length_c            305.24 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HCY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
PISA monomeric 1 author_and_software_defined_assembly 5 
PISA monomeric 1 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,G 1 1 
B,H 2 1 
C,I 3 1 
D,J 4 1 
E,K 5 1 
F,L 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C13 H17 N3 O S' 
_chem_comp.formula_weight    263.359 
_chem_comp.id                0YN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-3-methylthiophen-2-yl}ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5G C5B 0YN sing 1 n n 
C5B C5A 0YN sing 2 n n 
C5A C5 0YN sing 3 n n 
C5 C4 0YN doub 4 n y 
C5 S1 0YN sing 5 n y 
C4A C4 0YN sing 6 n n 
C4 C3 0YN sing 7 n y 
S1 C2 0YN sing 8 n y 
C3 C2 0YN doub 9 n y 
C3 C35 0YN sing 10 n n 
C35 C5' 0YN sing 11 n n 
C5' C6' 0YN doub 12 n y 
C5' C4' 0YN sing 13 n y 
C6' N1' 0YN sing 14 n y 
N4' C4' 0YN sing 15 n n 
C4' N3' 0YN doub 16 n y 
N1' C2' 0YN doub 17 n y 
N3' C2' 0YN sing 18 n y 
C2' C2A 0YN sing 19 n n 
C2A H1 0YN sing 20 n n 
C2A H2 0YN sing 21 n n 
C2A H3 0YN sing 22 n n 
C35 H4 0YN sing 23 n n 
C35 H5 0YN sing 24 n n 
C2 H6 0YN sing 25 n n 
C4A H7 0YN sing 26 n n 
C4A H8 0YN sing 27 n n 
C4A H9 0YN sing 28 n n 
C5A H10 0YN sing 29 n n 
C5A H11 0YN sing 30 n n 
C5B H12 0YN sing 31 n n 
C5B H13 0YN sing 32 n n 
O5G H14 0YN sing 33 n n 
N4' H15 0YN sing 34 n n 
N4' H16 0YN sing 35 n n 
C6' H17 0YN sing 36 n n 
#
_atom_sites.entry_id                     4HCY 
_atom_sites.fract_transf_matrix[1][1]    0.009607 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004954 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003276 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 0YN A 1 401 357 0YN T3N . 
H 2 0YN B 1 401 357 0YN T3N . 
I 2 0YN C 1 401 357 0YN T3N . 
J 2 0YN D 1 401 357 0YN T3N . 
K 2 0YN E 1 401 357 0YN T3N . 
L 2 0YN F 1 401 357 0YN T3N . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2A 0YN . . . L 2 -7.45 -32.835 15.632 1 128.9 ? C2A 0YN 401 F 1 
HETATM 2 C C35 0YN . . . L 2 -9.096 -28.255 18.661 1 128.9 ? C35 0YN 401 F 1 
HETATM 3 C C2 0YN . . . L 2 -9.634 -29.935 20.536 1 128.9 ? C2 0YN 401 F 1 
HETATM 4 S S1 0YN . . . L 2 -10.162 -29.925 22.188 1 128.9 ? S1 0YN 401 F 1 
HETATM 5 C C5 0YN . . . L 2 -10.263 -28.211 22.32 1 128.9 ? C5 0YN 401 F 1 
HETATM 6 C C4 0YN . . . L 2 -9.864 -27.621 21.012 1 128.9 ? C4 0YN 401 F 1 
HETATM 7 C C4A 0YN . . . L 2 -9.826 -26.143 20.732 1 128.9 ? C4A 0YN 401 F 1 
HETATM 8 C C5A 0YN . . . L 2 -10.705 -27.647 23.649 1 128.9 ? C5A 0YN 401 F 1 
HETATM 9 C C5B 0YN . . . L 2 -11.374 -28.739 24.474 1 128.9 ? C5B 0YN 401 F 1 
HETATM 10 O O5G 0YN . . . L 2 -11.85 -28.182 25.704 1 128.9 ? O5G 0YN 401 F 1 
HETATM 11 N N1' 0YN . . . L 2 -9.198 -31.43 16.67 1 128.9 ? N1' 0YN 401 F 1 
HETATM 12 C C2' 0YN . . . L 2 -7.886 -31.633 16.427 1 128.9 ? C2' 0YN 401 F 1 
HETATM 13 N N3' 0YN . . . L 2 -6.959 -30.769 16.892 1 128.9 ? N3' 0YN 401 F 1 
HETATM 14 C C4' 0YN . . . L 2 -7.33 -29.687 17.606 1 128.9 ? C4' 0YN 401 F 1 
HETATM 15 N N4' 0YN . . . L 2 -6.395 -28.824 18.07 1 128.9 ? N4' 0YN 401 F 1 
HETATM 16 C C5' 0YN . . . L 2 -8.669 -29.47 17.866 1 128.9 ? C5' 0YN 401 F 1 
HETATM 17 C C6' 0YN . . . L 2 -9.606 -30.368 17.371 1 128.9 ? C6' 0YN 401 F 1 
HETATM 18 C C3 0YN . . . L 2 -9.531 -28.615 20.065 1 128.9 ? C3 0YN 401 F 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#