data_4HD8
#
_model_server_result.job_id            LVLDhkK2xqqE4DPSshbBGg 
_model_server_result.datetime_utc      '2024-11-06 00:51:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hd8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4HD8 
#
_exptl.entry_id    4HD8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              244.243 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PICEATANNOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4HD8 
_cell.length_a            114.6 
_cell.length_b            114.6 
_cell.length_c            123.7 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HD8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 141 A CYS 256 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc2 A SG CYS 144 A CYS 259 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc3 A SG CYS 165 A CYS 280 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc4 A SG CYS 168 A CYS 283 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
#
_chem_comp.formula           'C14 H12 O4' 
_chem_comp.formula_weight    244.243 
_chem_comp.id                PIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PICEATANNOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-[(E)-2-(3,5-DIHYDROXYPHENYL)ETHENYL]BENZENE-1,2-DIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C6 PIT sing 320 n y 
C1 C2 PIT doub 321 n y 
C1 O3 PIT sing 322 n n 
C2 C3 PIT sing 323 n y 
C2 H2 PIT sing 324 n n 
C3 O2 PIT sing 325 n n 
C3 C4 PIT doub 326 n y 
C4 C5 PIT sing 327 n y 
C4 H4 PIT sing 328 n n 
C5 C7 PIT sing 329 n n 
C5 C6 PIT doub 330 n y 
C6 H6 PIT sing 331 n n 
C7 C8 PIT doub 332 e n 
C7 H7 PIT sing 333 n n 
C8 C9 PIT sing 334 n n 
C8 H8 PIT sing 335 n n 
C9 C10 PIT sing 336 n y 
C9 C14 PIT doub 337 n y 
C10 C11 PIT doub 338 n y 
C10 H10 PIT sing 339 n n 
C11 OAD PIT sing 340 n n 
C11 C12 PIT sing 341 n y 
C12 O1 PIT sing 342 n n 
C12 C13 PIT doub 343 n y 
C13 H13 PIT sing 344 n n 
C13 C14 PIT sing 345 n y 
C14 H14 PIT sing 346 n n 
O1 H1 PIT sing 347 n n 
O2 HA PIT sing 348 n n 
O3 H3 PIT sing 349 n n 
OAD HAD PIT sing 350 n n 
#
_atom_sites.entry_id                     4HD8 
_atom_sites.fract_transf_matrix[1][1]    0.008726 
_atom_sites.fract_transf_matrix[1][2]    0.005038 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008084 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 1 ZN ZN . 
D 4 PIT A 1 402 2 PIT PIT . 
E 5 IPA A 1 403 3 IPA IPA . 
F 6 HOH A 1 501 1 HOH HOH . 
F 6 HOH A 2 502 2 HOH HOH . 
F 6 HOH A 3 503 3 HOH HOH . 
F 6 HOH A 4 504 4 HOH HOH . 
F 6 HOH A 5 505 5 HOH HOH . 
F 6 HOH A 6 506 6 HOH HOH . 
F 6 HOH A 7 507 7 HOH HOH . 
F 6 HOH A 8 508 8 HOH HOH . 
F 6 HOH A 9 509 9 HOH HOH . 
F 6 HOH A 10 510 10 HOH HOH . 
F 6 HOH A 11 511 11 HOH HOH . 
F 6 HOH A 12 512 12 HOH HOH . 
F 6 HOH A 13 513 13 HOH HOH . 
F 6 HOH A 14 514 14 HOH HOH . 
F 6 HOH A 15 515 15 HOH HOH . 
F 6 HOH A 16 516 16 HOH HOH . 
F 6 HOH A 17 517 17 HOH HOH . 
F 6 HOH A 18 518 18 HOH HOH . 
F 6 HOH A 19 519 19 HOH HOH . 
F 6 HOH A 20 520 20 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 23 HOH HOH . 
F 6 HOH A 23 523 24 HOH HOH . 
F 6 HOH A 24 524 25 HOH HOH . 
F 6 HOH A 25 525 26 HOH HOH . 
F 6 HOH A 26 526 27 HOH HOH . 
F 6 HOH A 27 528 29 HOH HOH . 
F 6 HOH A 28 529 30 HOH HOH . 
F 6 HOH A 29 530 31 HOH HOH . 
F 6 HOH A 30 531 32 HOH HOH . 
F 6 HOH A 31 532 33 HOH HOH . 
F 6 HOH A 32 533 34 HOH HOH . 
F 6 HOH A 33 534 35 HOH HOH . 
F 6 HOH A 34 535 36 HOH HOH . 
F 6 HOH A 35 536 37 HOH HOH . 
F 6 HOH A 36 537 38 HOH HOH . 
F 6 HOH A 37 538 39 HOH HOH . 
F 6 HOH A 38 539 40 HOH HOH . 
F 6 HOH A 39 540 41 HOH HOH . 
F 6 HOH A 40 541 42 HOH HOH . 
F 6 HOH A 41 542 43 HOH HOH . 
F 6 HOH A 42 543 44 HOH HOH . 
F 6 HOH A 43 544 45 HOH HOH . 
F 6 HOH A 44 545 46 HOH HOH . 
F 6 HOH A 45 546 47 HOH HOH . 
F 6 HOH A 46 547 48 HOH HOH . 
F 6 HOH A 47 548 49 HOH HOH . 
F 6 HOH A 48 549 50 HOH HOH . 
F 6 HOH A 49 550 51 HOH HOH . 
F 6 HOH A 50 551 52 HOH HOH . 
F 6 HOH A 51 552 53 HOH HOH . 
F 6 HOH A 52 553 54 HOH HOH . 
F 6 HOH A 53 554 55 HOH HOH . 
F 6 HOH A 54 555 56 HOH HOH . 
F 6 HOH A 55 556 57 HOH HOH . 
F 6 HOH A 56 557 58 HOH HOH . 
F 6 HOH A 57 558 59 HOH HOH . 
F 6 HOH A 58 559 60 HOH HOH . 
F 6 HOH A 59 560 61 HOH HOH . 
F 6 HOH A 60 561 62 HOH HOH . 
F 6 HOH A 61 562 63 HOH HOH . 
F 6 HOH A 62 563 64 HOH HOH . 
F 6 HOH A 63 564 65 HOH HOH . 
F 6 HOH A 64 565 66 HOH HOH . 
F 6 HOH A 65 566 67 HOH HOH . 
F 6 HOH A 66 567 68 HOH HOH . 
F 6 HOH A 67 568 69 HOH HOH . 
F 6 HOH A 68 569 70 HOH HOH . 
F 6 HOH A 69 570 71 HOH HOH . 
F 6 HOH A 70 571 72 HOH HOH . 
F 6 HOH A 71 572 73 HOH HOH . 
F 6 HOH A 72 573 74 HOH HOH . 
F 6 HOH A 73 574 75 HOH HOH . 
F 6 HOH A 74 575 76 HOH HOH . 
F 6 HOH A 75 576 77 HOH HOH . 
F 6 HOH A 76 577 78 HOH HOH . 
F 6 HOH A 77 578 80 HOH HOH . 
F 6 HOH A 78 579 81 HOH HOH . 
F 6 HOH A 79 580 82 HOH HOH . 
F 6 HOH A 80 581 84 HOH HOH . 
F 6 HOH A 81 582 85 HOH HOH . 
F 6 HOH A 82 583 86 HOH HOH . 
F 6 HOH A 83 584 87 HOH HOH . 
F 6 HOH A 84 585 88 HOH HOH . 
F 6 HOH A 85 586 89 HOH HOH . 
F 6 HOH A 86 587 90 HOH HOH . 
F 6 HOH A 87 588 91 HOH HOH . 
F 6 HOH A 88 589 92 HOH HOH . 
F 6 HOH A 89 590 93 HOH HOH . 
F 6 HOH A 90 591 95 HOH HOH . 
F 6 HOH A 91 592 96 HOH HOH . 
F 6 HOH A 92 593 97 HOH HOH . 
F 6 HOH A 93 594 98 HOH HOH . 
F 6 HOH A 94 595 99 HOH HOH . 
F 6 HOH A 95 596 100 HOH HOH . 
F 6 HOH A 96 597 101 HOH HOH . 
F 6 HOH A 97 598 102 HOH HOH . 
F 6 HOH A 98 599 103 HOH HOH . 
F 6 HOH A 99 600 104 HOH HOH . 
G 6 HOH F 1 101 79 HOH HOH . 
G 6 HOH F 2 102 83 HOH HOH . 
G 6 HOH F 3 103 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIT . . . D 4 21.116 24.997 23.995 0.5 34.26 ? C1 PIT 402 A 1 
HETATM 2 C C2 PIT . . . D 4 20.102 25.572 24.777 0.5 31.77 ? C2 PIT 402 A 1 
HETATM 3 C C3 PIT . . . D 4 19.532 26.831 24.5 0.5 30.6 ? C3 PIT 402 A 1 
HETATM 4 C C4 PIT . . . D 4 20.019 27.53 23.388 0.5 31.66 ? C4 PIT 402 A 1 
HETATM 5 C C5 PIT . . . D 4 21.015 26.962 22.59 0.5 33.69 ? C5 PIT 402 A 1 
HETATM 6 C C6 PIT . . . D 4 21.574 25.714 22.891 0.5 34.64 ? C6 PIT 402 A 1 
HETATM 7 C C7 PIT . . . D 4 21.544 27.65 21.388 0.5 34.97 ? C7 PIT 402 A 1 
HETATM 8 C C8 PIT . . . D 4 22.526 26.982 20.772 0.5 35.23 ? C8 PIT 402 A 1 
HETATM 9 C C9 PIT . . . D 4 23.091 27.6 19.572 0.5 38.2 ? C9 PIT 402 A 1 
HETATM 10 C C10 PIT . . . D 4 24.158 26.986 18.916 0.5 37.99 ? C10 PIT 402 A 1 
HETATM 11 C C11 PIT . . . D 4 24.661 27.6 17.764 0.5 39.36 ? C11 PIT 402 A 1 
HETATM 12 C C12 PIT . . . D 4 24.008 28.869 17.282 0.5 37.66 ? C12 PIT 402 A 1 
HETATM 13 C C13 PIT . . . D 4 22.929 29.411 17.969 0.5 37.21 ? C13 PIT 402 A 1 
HETATM 14 C C14 PIT . . . D 4 22.482 28.776 19.116 0.5 39.64 ? C14 PIT 402 A 1 
HETATM 15 O O1 PIT . . . D 4 24.455 29.525 16.168 0.5 38.46 ? O1 PIT 402 A 1 
HETATM 16 O O2 PIT . . . D 4 18.513 27.357 25.287 0.5 25.41 ? O2 PIT 402 A 1 
HETATM 17 O O3 PIT . . . D 4 21.664 23.771 24.287 0.5 34.43 ? O3 PIT 402 A 1 
HETATM 18 O OAD PIT . . . D 4 25.726 27.034 17.098 0.5 37.89 ? OAD PIT 402 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           18 
#