data_4HDA # _model_server_result.job_id EJFZLmc5TZ-pjCJOD4mmEg _model_server_result.datetime_utc '2025-07-18 03:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 4HDA # _exptl.entry_id 4HDA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.243 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RESVERATROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.05 _cell.angle_gamma 90 _cell.entry_id 4HDA _cell.length_a 41.3 _cell.length_b 112.69 _cell.length_c 55.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HDA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,C,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 139 A CYS 166 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc2 A SG CYS 142 A CYS 169 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A SG CYS 180 A CYS 207 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc4 A SG CYS 185 A CYS 212 1_555 D ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 B SG CYS 139 B CYS 166 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 B SG CYS 142 B CYS 169 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc7 B SG CYS 180 B CYS 207 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc8 B SG CYS 185 B CYS 212 1_555 E ZN ZN . B ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'C14 H12 O3' _chem_comp.formula_weight 228.243 _chem_comp.id STL _chem_comp.mon_nstd_flag . _chem_comp.name RESVERATROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 STL doub 339 n y C1 C6 STL sing 340 n y C1 O3 STL sing 341 n n C2 C3 STL sing 342 n y C2 H2 STL sing 343 n n C3 C4 STL doub 344 n y C3 O2 STL sing 345 n n C4 C5 STL sing 346 n y C4 H4 STL sing 347 n n C5 C6 STL doub 348 n y C5 C7 STL sing 349 n n C6 H6 STL sing 350 n n C7 C8 STL doub 351 e n C7 H7 STL sing 352 n n C8 C9 STL sing 353 n n C8 H8 STL sing 354 n n C9 C10 STL doub 355 n y C9 C14 STL sing 356 n y C10 C11 STL sing 357 n y C10 H10 STL sing 358 n n C11 C12 STL doub 359 n y C11 H11 STL sing 360 n n C12 C13 STL sing 361 n y C12 O1 STL sing 362 n n C13 C14 STL doub 363 n y C13 H13 STL sing 364 n n C14 H14 STL sing 365 n n O1 HO1 STL sing 366 n n O2 HO2 STL sing 367 n n O3 HO3 STL sing 368 n n # _atom_sites.entry_id 4HDA _atom_sites.fract_transf_matrix[1][1] 0.024213 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000021 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017892 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 ZN A 1 401 1 ZN ZN . E 3 ZN B 1 401 2 ZN ZN . F 4 STL B 1 402 3 STL REV . G 5 HOH A 1 501 3 HOH HOH . G 5 HOH A 2 502 4 HOH HOH . G 5 HOH A 3 503 6 HOH HOH . G 5 HOH A 4 504 7 HOH HOH . G 5 HOH A 5 505 9 HOH HOH . G 5 HOH A 6 506 11 HOH HOH . G 5 HOH A 7 507 12 HOH HOH . G 5 HOH A 8 508 13 HOH HOH . G 5 HOH A 9 509 14 HOH HOH . G 5 HOH A 10 510 15 HOH HOH . H 5 HOH B 1 501 1 HOH HOH . H 5 HOH B 2 502 2 HOH HOH . H 5 HOH B 3 503 5 HOH HOH . H 5 HOH B 4 504 8 HOH HOH . H 5 HOH B 5 505 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 STL . . . F 4 1.718 26.236 15.851 1 59.94 ? C1 STL 402 B 1 HETATM 2 C C2 STL . . . F 4 1.246 26.551 17.118 1 69.82 ? C2 STL 402 B 1 HETATM 3 C C3 STL . . . F 4 0.32 25.723 17.743 1 68.63 ? C3 STL 402 B 1 HETATM 4 C C4 STL . . . F 4 -0.131 24.577 17.096 1 62 ? C4 STL 402 B 1 HETATM 5 C C5 STL . . . F 4 0.415 24.236 15.854 1 75.33 ? C5 STL 402 B 1 HETATM 6 C C6 STL . . . F 4 1.22 25.131 15.189 1 69.67 ? C6 STL 402 B 1 HETATM 7 C C7 STL . . . F 4 -0.07 23.148 15.156 1 75.68 ? C7 STL 402 B 1 HETATM 8 C C8 STL . . . F 4 -0.08 23.11 13.635 1 64.74 ? C8 STL 402 B 1 HETATM 9 C C9 STL . . . F 4 -0.568 21.946 13.084 1 63.89 ? C9 STL 402 B 1 HETATM 10 C C10 STL . . . F 4 -1.431 22.051 12.029 1 59.53 ? C10 STL 402 B 1 HETATM 11 C C11 STL . . . F 4 -1.967 20.94 11.42 1 66.69 ? C11 STL 402 B 1 HETATM 12 C C12 STL . . . F 4 -1.388 19.709 11.665 1 60.72 ? C12 STL 402 B 1 HETATM 13 C C13 STL . . . F 4 -0.346 19.598 12.581 1 55.71 ? C13 STL 402 B 1 HETATM 14 C C14 STL . . . F 4 0.104 20.732 13.258 1 62.5 ? C14 STL 402 B 1 HETATM 15 O O1 STL . . . F 4 -1.844 18.623 10.992 1 45.28 ? O1 STL 402 B 1 HETATM 16 O O2 STL . . . F 4 -0.135 26.037 18.987 1 60.63 ? O2 STL 402 B 1 HETATM 17 O O3 STL . . . F 4 2.62 27.04 15.229 1 53.67 ? O3 STL 402 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #