data_4HDB
#
_model_server_result.job_id            Jk0S3gSZl5ZOIwZWg-C8BQ 
_model_server_result.datetime_utc      '2024-11-28 11:09:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hdb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    4HDB 
#
_exptl.entry_id    4HDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HDB 
_cell.length_a            58.723 
_cell.length_b            86.243 
_cell.length_c            45.898 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 60 A ASP 60 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc2 D NA NA . A NA 402 1_555 G O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc3 D NA NA . A NA 402 1_555 G O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc4 D NA NA . A NA 402 1_555 G O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc5 D NA NA . A NA 402 1_555 G O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc6 D NA NA . A NA 402 1_555 G O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4HDB 
_atom_sites.fract_transf_matrix[1][1]    0.017029 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011595 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021787 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 G52 A 1 401 401 G52 G52 . 
D 3 NA A 1 402 501 NA NA . 
E 4 CL A 1 403 511 CL CL . 
F 4 CL B 1 201 512 CL CL . 
G 5 HOH A 1 1001 1001 HOH HOH . 
G 5 HOH A 2 1002 1002 HOH HOH . 
G 5 HOH A 3 1003 1003 HOH HOH . 
G 5 HOH A 4 1004 1004 HOH HOH . 
G 5 HOH A 5 1005 1005 HOH HOH . 
G 5 HOH A 6 1006 1006 HOH HOH . 
G 5 HOH A 7 1007 1007 HOH HOH . 
G 5 HOH A 8 1008 1008 HOH HOH . 
G 5 HOH A 9 1009 1010 HOH HOH . 
G 5 HOH A 10 1010 1015 HOH HOH . 
G 5 HOH A 11 1011 1016 HOH HOH . 
G 5 HOH A 12 1012 1017 HOH HOH . 
G 5 HOH A 13 1013 1021 HOH HOH . 
G 5 HOH A 14 1014 1022 HOH HOH . 
G 5 HOH A 15 1015 1023 HOH HOH . 
G 5 HOH A 16 1016 1024 HOH HOH . 
G 5 HOH A 17 1017 1027 HOH HOH . 
G 5 HOH A 18 1018 1030 HOH HOH . 
G 5 HOH A 19 1019 1031 HOH HOH . 
G 5 HOH A 20 1020 1032 HOH HOH . 
G 5 HOH A 21 1021 1036 HOH HOH . 
G 5 HOH A 22 1022 1038 HOH HOH . 
G 5 HOH A 23 1023 1041 HOH HOH . 
G 5 HOH A 24 1024 1042 HOH HOH . 
G 5 HOH A 25 1025 1043 HOH HOH . 
G 5 HOH A 26 1026 1044 HOH HOH . 
G 5 HOH A 27 1027 1050 HOH HOH . 
G 5 HOH A 28 1028 1053 HOH HOH . 
G 5 HOH A 29 1029 1058 HOH HOH . 
G 5 HOH A 30 1030 1060 HOH HOH . 
G 5 HOH A 31 1031 1063 HOH HOH . 
G 5 HOH A 32 1032 1064 HOH HOH . 
G 5 HOH A 33 1033 1066 HOH HOH . 
G 5 HOH A 34 1034 1071 HOH HOH . 
G 5 HOH A 35 1035 1072 HOH HOH . 
G 5 HOH A 36 1036 1073 HOH HOH . 
G 5 HOH A 37 1037 1074 HOH HOH . 
G 5 HOH A 38 1038 1075 HOH HOH . 
G 5 HOH A 39 1039 1076 HOH HOH . 
G 5 HOH A 40 1040 1078 HOH HOH . 
G 5 HOH A 41 1041 1082 HOH HOH . 
G 5 HOH A 42 1042 1084 HOH HOH . 
G 5 HOH A 43 1043 1087 HOH HOH . 
G 5 HOH A 44 1044 1094 HOH HOH . 
G 5 HOH A 45 1045 1096 HOH HOH . 
G 5 HOH A 46 1046 1098 HOH HOH . 
G 5 HOH A 47 1047 1099 HOH HOH . 
G 5 HOH A 48 1048 1100 HOH HOH . 
G 5 HOH A 49 1049 1101 HOH HOH . 
G 5 HOH A 50 1050 1103 HOH HOH . 
G 5 HOH A 51 1051 1104 HOH HOH . 
G 5 HOH A 52 1052 1105 HOH HOH . 
G 5 HOH A 53 1053 1107 HOH HOH . 
G 5 HOH A 54 1054 1108 HOH HOH . 
G 5 HOH A 55 1055 1112 HOH HOH . 
G 5 HOH A 56 1056 1113 HOH HOH . 
G 5 HOH A 57 1057 1114 HOH HOH . 
G 5 HOH A 58 1058 1119 HOH HOH . 
G 5 HOH A 59 1059 1121 HOH HOH . 
G 5 HOH A 60 1060 1122 HOH HOH . 
G 5 HOH A 61 1061 1125 HOH HOH . 
G 5 HOH A 62 1062 1126 HOH HOH . 
G 5 HOH A 63 1063 1127 HOH HOH . 
G 5 HOH A 64 1064 1135 HOH HOH . 
G 5 HOH A 65 1065 1136 HOH HOH . 
G 5 HOH A 66 1066 1137 HOH HOH . 
G 5 HOH A 67 1067 1139 HOH HOH . 
G 5 HOH A 68 1068 1140 HOH HOH . 
G 5 HOH A 69 1069 1142 HOH HOH . 
G 5 HOH A 70 1070 1145 HOH HOH . 
G 5 HOH A 71 1071 1152 HOH HOH . 
G 5 HOH A 72 1072 1154 HOH HOH . 
G 5 HOH A 73 1073 1158 HOH HOH . 
G 5 HOH A 74 1074 1159 HOH HOH . 
G 5 HOH A 75 1075 1160 HOH HOH . 
G 5 HOH A 76 1076 1161 HOH HOH . 
G 5 HOH A 77 1077 1162 HOH HOH . 
G 5 HOH A 78 1078 1163 HOH HOH . 
G 5 HOH A 79 1079 1167 HOH HOH . 
G 5 HOH A 80 1080 1168 HOH HOH . 
G 5 HOH A 81 1081 1169 HOH HOH . 
G 5 HOH A 82 1082 1174 HOH HOH . 
G 5 HOH A 83 1083 1175 HOH HOH . 
G 5 HOH A 84 1084 1176 HOH HOH . 
G 5 HOH A 85 1085 1177 HOH HOH . 
G 5 HOH A 86 1086 1178 HOH HOH . 
G 5 HOH A 87 1087 1179 HOH HOH . 
G 5 HOH A 88 1088 1180 HOH HOH . 
G 5 HOH A 89 1089 1182 HOH HOH . 
G 5 HOH A 90 1090 1183 HOH HOH . 
G 5 HOH A 91 1091 1184 HOH HOH . 
G 5 HOH A 92 1092 1188 HOH HOH . 
G 5 HOH A 93 1093 1189 HOH HOH . 
G 5 HOH A 94 1094 1020 HOH HOH . 
H 5 HOH B 1 301 1164 HOH HOH . 
H 5 HOH B 2 302 1009 HOH HOH . 
H 5 HOH B 3 303 1011 HOH HOH . 
H 5 HOH B 4 304 1012 HOH HOH . 
H 5 HOH B 5 305 1013 HOH HOH . 
H 5 HOH B 6 306 1014 HOH HOH . 
H 5 HOH B 7 307 1018 HOH HOH . 
H 5 HOH B 8 308 1019 HOH HOH . 
H 5 HOH B 9 309 1025 HOH HOH . 
H 5 HOH B 10 310 1026 HOH HOH . 
H 5 HOH B 11 311 1028 HOH HOH . 
H 5 HOH B 12 312 1029 HOH HOH . 
H 5 HOH B 13 313 1033 HOH HOH . 
H 5 HOH B 14 314 1034 HOH HOH . 
H 5 HOH B 15 315 1035 HOH HOH . 
H 5 HOH B 16 316 1037 HOH HOH . 
H 5 HOH B 17 317 1039 HOH HOH . 
H 5 HOH B 18 318 1040 HOH HOH . 
H 5 HOH B 19 319 1045 HOH HOH . 
H 5 HOH B 20 320 1046 HOH HOH . 
H 5 HOH B 21 321 1047 HOH HOH . 
H 5 HOH B 22 322 1048 HOH HOH . 
H 5 HOH B 23 323 1049 HOH HOH . 
H 5 HOH B 24 324 1051 HOH HOH . 
H 5 HOH B 25 325 1052 HOH HOH . 
H 5 HOH B 26 326 1054 HOH HOH . 
H 5 HOH B 27 327 1055 HOH HOH . 
H 5 HOH B 28 328 1056 HOH HOH . 
H 5 HOH B 29 329 1057 HOH HOH . 
H 5 HOH B 30 330 1059 HOH HOH . 
H 5 HOH B 31 331 1061 HOH HOH . 
H 5 HOH B 32 332 1062 HOH HOH . 
H 5 HOH B 33 333 1065 HOH HOH . 
H 5 HOH B 34 334 1067 HOH HOH . 
H 5 HOH B 35 335 1068 HOH HOH . 
H 5 HOH B 36 336 1069 HOH HOH . 
H 5 HOH B 37 337 1070 HOH HOH . 
H 5 HOH B 38 338 1077 HOH HOH . 
H 5 HOH B 39 339 1079 HOH HOH . 
H 5 HOH B 40 340 1080 HOH HOH . 
H 5 HOH B 41 341 1081 HOH HOH . 
H 5 HOH B 42 342 1083 HOH HOH . 
H 5 HOH B 43 343 1085 HOH HOH . 
H 5 HOH B 44 344 1086 HOH HOH . 
H 5 HOH B 45 345 1088 HOH HOH . 
H 5 HOH B 46 346 1089 HOH HOH . 
H 5 HOH B 47 347 1090 HOH HOH . 
H 5 HOH B 48 348 1091 HOH HOH . 
H 5 HOH B 49 349 1092 HOH HOH . 
H 5 HOH B 50 350 1093 HOH HOH . 
H 5 HOH B 51 351 1095 HOH HOH . 
H 5 HOH B 52 352 1097 HOH HOH . 
H 5 HOH B 53 353 1102 HOH HOH . 
H 5 HOH B 54 354 1106 HOH HOH . 
H 5 HOH B 55 355 1109 HOH HOH . 
H 5 HOH B 56 356 1110 HOH HOH . 
H 5 HOH B 57 357 1111 HOH HOH . 
H 5 HOH B 58 358 1115 HOH HOH . 
H 5 HOH B 59 359 1116 HOH HOH . 
H 5 HOH B 60 360 1117 HOH HOH . 
H 5 HOH B 61 361 1118 HOH HOH . 
H 5 HOH B 62 362 1120 HOH HOH . 
H 5 HOH B 63 363 1124 HOH HOH . 
H 5 HOH B 64 364 1128 HOH HOH . 
H 5 HOH B 65 365 1129 HOH HOH . 
H 5 HOH B 66 366 1130 HOH HOH . 
H 5 HOH B 67 367 1131 HOH HOH . 
H 5 HOH B 68 368 1132 HOH HOH . 
H 5 HOH B 69 369 1133 HOH HOH . 
H 5 HOH B 70 370 1134 HOH HOH . 
H 5 HOH B 71 371 1138 HOH HOH . 
H 5 HOH B 72 372 1144 HOH HOH . 
H 5 HOH B 73 373 1146 HOH HOH . 
H 5 HOH B 74 374 1147 HOH HOH . 
H 5 HOH B 75 375 1148 HOH HOH . 
H 5 HOH B 76 376 1149 HOH HOH . 
H 5 HOH B 77 377 1150 HOH HOH . 
H 5 HOH B 78 378 1151 HOH HOH . 
H 5 HOH B 79 379 1153 HOH HOH . 
H 5 HOH B 80 380 1155 HOH HOH . 
H 5 HOH B 81 381 1156 HOH HOH . 
H 5 HOH B 82 382 1157 HOH HOH . 
H 5 HOH B 83 383 1166 HOH HOH . 
H 5 HOH B 84 384 1171 HOH HOH . 
H 5 HOH B 85 385 1172 HOH HOH . 
H 5 HOH B 86 386 1173 HOH HOH . 
H 5 HOH B 87 387 1181 HOH HOH . 
H 5 HOH B 88 388 1187 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               24.225 
_atom_site.Cartn_y               39.958 
_atom_site.Cartn_z               1.283 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           402 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           774 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#