data_4HDB # _model_server_result.job_id JvUWi-zSVmUu7XhRcN1HPw _model_server_result.datetime_utc '2024-11-14 23:24:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hdb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4HDB # _exptl.entry_id 4HDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HDB _cell.length_a 58.723 _cell.length_b 86.243 _cell.length_c 45.898 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc2 D NA NA . A NA 402 1_555 G O HOH . A HOH 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc3 D NA NA . A NA 402 1_555 G O HOH . A HOH 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc4 D NA NA . A NA 402 1_555 G O HOH . A HOH 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc5 D NA NA . A NA 402 1_555 G O HOH . A HOH 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc6 D NA NA . A NA 402 1_555 G O HOH . A HOH 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HDB _atom_sites.fract_transf_matrix[1][1] 0.017029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G52 A 1 401 401 G52 G52 . D 3 NA A 1 402 501 NA NA . E 4 CL A 1 403 511 CL CL . F 4 CL B 1 201 512 CL CL . G 5 HOH A 1 1001 1001 HOH HOH . G 5 HOH A 2 1002 1002 HOH HOH . G 5 HOH A 3 1003 1003 HOH HOH . G 5 HOH A 4 1004 1004 HOH HOH . G 5 HOH A 5 1005 1005 HOH HOH . G 5 HOH A 6 1006 1006 HOH HOH . G 5 HOH A 7 1007 1007 HOH HOH . G 5 HOH A 8 1008 1008 HOH HOH . G 5 HOH A 9 1009 1010 HOH HOH . G 5 HOH A 10 1010 1015 HOH HOH . G 5 HOH A 11 1011 1016 HOH HOH . G 5 HOH A 12 1012 1017 HOH HOH . G 5 HOH A 13 1013 1021 HOH HOH . G 5 HOH A 14 1014 1022 HOH HOH . G 5 HOH A 15 1015 1023 HOH HOH . G 5 HOH A 16 1016 1024 HOH HOH . G 5 HOH A 17 1017 1027 HOH HOH . G 5 HOH A 18 1018 1030 HOH HOH . G 5 HOH A 19 1019 1031 HOH HOH . G 5 HOH A 20 1020 1032 HOH HOH . G 5 HOH A 21 1021 1036 HOH HOH . G 5 HOH A 22 1022 1038 HOH HOH . G 5 HOH A 23 1023 1041 HOH HOH . G 5 HOH A 24 1024 1042 HOH HOH . G 5 HOH A 25 1025 1043 HOH HOH . G 5 HOH A 26 1026 1044 HOH HOH . G 5 HOH A 27 1027 1050 HOH HOH . G 5 HOH A 28 1028 1053 HOH HOH . G 5 HOH A 29 1029 1058 HOH HOH . G 5 HOH A 30 1030 1060 HOH HOH . G 5 HOH A 31 1031 1063 HOH HOH . G 5 HOH A 32 1032 1064 HOH HOH . G 5 HOH A 33 1033 1066 HOH HOH . G 5 HOH A 34 1034 1071 HOH HOH . G 5 HOH A 35 1035 1072 HOH HOH . G 5 HOH A 36 1036 1073 HOH HOH . G 5 HOH A 37 1037 1074 HOH HOH . G 5 HOH A 38 1038 1075 HOH HOH . G 5 HOH A 39 1039 1076 HOH HOH . G 5 HOH A 40 1040 1078 HOH HOH . G 5 HOH A 41 1041 1082 HOH HOH . G 5 HOH A 42 1042 1084 HOH HOH . G 5 HOH A 43 1043 1087 HOH HOH . G 5 HOH A 44 1044 1094 HOH HOH . G 5 HOH A 45 1045 1096 HOH HOH . G 5 HOH A 46 1046 1098 HOH HOH . G 5 HOH A 47 1047 1099 HOH HOH . G 5 HOH A 48 1048 1100 HOH HOH . G 5 HOH A 49 1049 1101 HOH HOH . G 5 HOH A 50 1050 1103 HOH HOH . G 5 HOH A 51 1051 1104 HOH HOH . G 5 HOH A 52 1052 1105 HOH HOH . G 5 HOH A 53 1053 1107 HOH HOH . G 5 HOH A 54 1054 1108 HOH HOH . G 5 HOH A 55 1055 1112 HOH HOH . G 5 HOH A 56 1056 1113 HOH HOH . G 5 HOH A 57 1057 1114 HOH HOH . G 5 HOH A 58 1058 1119 HOH HOH . G 5 HOH A 59 1059 1121 HOH HOH . G 5 HOH A 60 1060 1122 HOH HOH . G 5 HOH A 61 1061 1125 HOH HOH . G 5 HOH A 62 1062 1126 HOH HOH . G 5 HOH A 63 1063 1127 HOH HOH . G 5 HOH A 64 1064 1135 HOH HOH . G 5 HOH A 65 1065 1136 HOH HOH . G 5 HOH A 66 1066 1137 HOH HOH . G 5 HOH A 67 1067 1139 HOH HOH . G 5 HOH A 68 1068 1140 HOH HOH . G 5 HOH A 69 1069 1142 HOH HOH . G 5 HOH A 70 1070 1145 HOH HOH . G 5 HOH A 71 1071 1152 HOH HOH . G 5 HOH A 72 1072 1154 HOH HOH . G 5 HOH A 73 1073 1158 HOH HOH . G 5 HOH A 74 1074 1159 HOH HOH . G 5 HOH A 75 1075 1160 HOH HOH . G 5 HOH A 76 1076 1161 HOH HOH . G 5 HOH A 77 1077 1162 HOH HOH . G 5 HOH A 78 1078 1163 HOH HOH . G 5 HOH A 79 1079 1167 HOH HOH . G 5 HOH A 80 1080 1168 HOH HOH . G 5 HOH A 81 1081 1169 HOH HOH . G 5 HOH A 82 1082 1174 HOH HOH . G 5 HOH A 83 1083 1175 HOH HOH . G 5 HOH A 84 1084 1176 HOH HOH . G 5 HOH A 85 1085 1177 HOH HOH . G 5 HOH A 86 1086 1178 HOH HOH . G 5 HOH A 87 1087 1179 HOH HOH . G 5 HOH A 88 1088 1180 HOH HOH . G 5 HOH A 89 1089 1182 HOH HOH . G 5 HOH A 90 1090 1183 HOH HOH . G 5 HOH A 91 1091 1184 HOH HOH . G 5 HOH A 92 1092 1188 HOH HOH . G 5 HOH A 93 1093 1189 HOH HOH . G 5 HOH A 94 1094 1020 HOH HOH . H 5 HOH B 1 301 1164 HOH HOH . H 5 HOH B 2 302 1009 HOH HOH . H 5 HOH B 3 303 1011 HOH HOH . H 5 HOH B 4 304 1012 HOH HOH . H 5 HOH B 5 305 1013 HOH HOH . H 5 HOH B 6 306 1014 HOH HOH . H 5 HOH B 7 307 1018 HOH HOH . H 5 HOH B 8 308 1019 HOH HOH . H 5 HOH B 9 309 1025 HOH HOH . H 5 HOH B 10 310 1026 HOH HOH . H 5 HOH B 11 311 1028 HOH HOH . H 5 HOH B 12 312 1029 HOH HOH . H 5 HOH B 13 313 1033 HOH HOH . H 5 HOH B 14 314 1034 HOH HOH . H 5 HOH B 15 315 1035 HOH HOH . H 5 HOH B 16 316 1037 HOH HOH . H 5 HOH B 17 317 1039 HOH HOH . H 5 HOH B 18 318 1040 HOH HOH . H 5 HOH B 19 319 1045 HOH HOH . H 5 HOH B 20 320 1046 HOH HOH . H 5 HOH B 21 321 1047 HOH HOH . H 5 HOH B 22 322 1048 HOH HOH . H 5 HOH B 23 323 1049 HOH HOH . H 5 HOH B 24 324 1051 HOH HOH . H 5 HOH B 25 325 1052 HOH HOH . H 5 HOH B 26 326 1054 HOH HOH . H 5 HOH B 27 327 1055 HOH HOH . H 5 HOH B 28 328 1056 HOH HOH . H 5 HOH B 29 329 1057 HOH HOH . H 5 HOH B 30 330 1059 HOH HOH . H 5 HOH B 31 331 1061 HOH HOH . H 5 HOH B 32 332 1062 HOH HOH . H 5 HOH B 33 333 1065 HOH HOH . H 5 HOH B 34 334 1067 HOH HOH . H 5 HOH B 35 335 1068 HOH HOH . H 5 HOH B 36 336 1069 HOH HOH . H 5 HOH B 37 337 1070 HOH HOH . H 5 HOH B 38 338 1077 HOH HOH . H 5 HOH B 39 339 1079 HOH HOH . H 5 HOH B 40 340 1080 HOH HOH . H 5 HOH B 41 341 1081 HOH HOH . H 5 HOH B 42 342 1083 HOH HOH . H 5 HOH B 43 343 1085 HOH HOH . H 5 HOH B 44 344 1086 HOH HOH . H 5 HOH B 45 345 1088 HOH HOH . H 5 HOH B 46 346 1089 HOH HOH . H 5 HOH B 47 347 1090 HOH HOH . H 5 HOH B 48 348 1091 HOH HOH . H 5 HOH B 49 349 1092 HOH HOH . H 5 HOH B 50 350 1093 HOH HOH . H 5 HOH B 51 351 1095 HOH HOH . H 5 HOH B 52 352 1097 HOH HOH . H 5 HOH B 53 353 1102 HOH HOH . H 5 HOH B 54 354 1106 HOH HOH . H 5 HOH B 55 355 1109 HOH HOH . H 5 HOH B 56 356 1110 HOH HOH . H 5 HOH B 57 357 1111 HOH HOH . H 5 HOH B 58 358 1115 HOH HOH . H 5 HOH B 59 359 1116 HOH HOH . H 5 HOH B 60 360 1117 HOH HOH . H 5 HOH B 61 361 1118 HOH HOH . H 5 HOH B 62 362 1120 HOH HOH . H 5 HOH B 63 363 1124 HOH HOH . H 5 HOH B 64 364 1128 HOH HOH . H 5 HOH B 65 365 1129 HOH HOH . H 5 HOH B 66 366 1130 HOH HOH . H 5 HOH B 67 367 1131 HOH HOH . H 5 HOH B 68 368 1132 HOH HOH . H 5 HOH B 69 369 1133 HOH HOH . H 5 HOH B 70 370 1134 HOH HOH . H 5 HOH B 71 371 1138 HOH HOH . H 5 HOH B 72 372 1144 HOH HOH . H 5 HOH B 73 373 1146 HOH HOH . H 5 HOH B 74 374 1147 HOH HOH . H 5 HOH B 75 375 1148 HOH HOH . H 5 HOH B 76 376 1149 HOH HOH . H 5 HOH B 77 377 1150 HOH HOH . H 5 HOH B 78 378 1151 HOH HOH . H 5 HOH B 79 379 1153 HOH HOH . H 5 HOH B 80 380 1155 HOH HOH . H 5 HOH B 81 381 1156 HOH HOH . H 5 HOH B 82 382 1157 HOH HOH . H 5 HOH B 83 383 1166 HOH HOH . H 5 HOH B 84 384 1171 HOH HOH . H 5 HOH B 85 385 1172 HOH HOH . H 5 HOH B 86 386 1173 HOH HOH . H 5 HOH B 87 387 1181 HOH HOH . H 5 HOH B 88 388 1187 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.225 _atom_site.Cartn_y 39.958 _atom_site.Cartn_z 1.283 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #