data_4HDL # _model_server_result.job_id lqhcND9RDjiBMBLrtioh-g _model_server_result.datetime_utc '2024-11-08 03:18:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hdl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":75}' # _entry.id 4HDL # _exptl.entry_id 4HDL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.572 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HDL _cell.length_a 32.3 _cell.length_b 32.3 _cell.length_c 179.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HDL _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z+1/4 0 1 0 1 0 0 0 0 -1 0 0 44.8 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 27 A CYS 27 1_555 B CAB HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale2 A SG CYS 30 A CYS 30 1_555 B CAC HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale3 A SG CYS 51 A CYS 51 1_555 C CAB HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? covale ? covale4 A SG CYS 54 A CYS 54 1_555 C CAC HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale5 A SG CYS 65 A CYS 65 1_555 D CAB HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale6 A SG CYS 68 A CYS 68 1_555 D CAC HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc1 A NE2 HIS 17 A HIS 17 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc2 A NE2 HIS 20 A HIS 20 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A NE2 HIS 31 A HIS 31 1_555 B FE HEC . A HEC 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc4 A NE2 HIS 47 A HIS 47 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 A NE2 HIS 55 A HIS 55 1_555 C FE HEC . A HEC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc6 A NE2 HIS 69 A HIS 69 1_555 D FE HEC . A HEC 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C24 H40 O4' _chem_comp.formula_weight 392.572 _chem_comp.id DXC _chem_comp.mon_nstd_flag . _chem_comp.name '(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DEOXYCHOLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DXC sing 57 n n C1 C6 DXC sing 58 n n C1 O2 DXC sing 59 n n C1 H1 DXC sing 60 n n C2 C3 DXC sing 61 n n C2 H22 DXC sing 62 n n C2 H21 DXC sing 63 n n C3 C4 DXC sing 64 n n C3 C7 DXC sing 65 n n C3 H3 DXC sing 66 n n C4 C5 DXC sing 67 n n C4 C10 DXC sing 68 n n C4 C18 DXC sing 69 n n C5 C6 DXC sing 70 n n C5 H52 DXC sing 71 n n C5 H51 DXC sing 72 n n C6 H62 DXC sing 73 n n C6 H61 DXC sing 74 n n C7 C8 DXC sing 75 n n C7 H72 DXC sing 76 n n C7 H71 DXC sing 77 n n C8 C9 DXC sing 78 n n C8 H82 DXC sing 79 n n C8 H81 DXC sing 80 n n C9 C10 DXC sing 81 n n C9 C11 DXC sing 82 n n C9 H9 DXC sing 83 n n C10 C14 DXC sing 84 n n C10 H10 DXC sing 85 n n C11 C12 DXC sing 86 n n C11 C15 DXC sing 87 n n C11 H11 DXC sing 88 n n C12 C13 DXC sing 89 n n C12 C17 DXC sing 90 n n C12 C20 DXC sing 91 n n C13 C14 DXC sing 92 n n C13 O1 DXC sing 93 n n C13 H13 DXC sing 94 n n C14 H142 DXC sing 95 n n C14 H141 DXC sing 96 n n C15 C16 DXC sing 97 n n C15 H152 DXC sing 98 n n C15 H151 DXC sing 99 n n C16 C17 DXC sing 100 n n C16 H162 DXC sing 101 n n C16 H161 DXC sing 102 n n C17 C19 DXC sing 103 n n C17 H17 DXC sing 104 n n C18 H183 DXC sing 105 n n C18 H182 DXC sing 106 n n C18 H181 DXC sing 107 n n C19 C21 DXC sing 108 n n C19 C24 DXC sing 109 n n C19 H19 DXC sing 110 n n O1 H1O1 DXC sing 111 n n O2 H2 DXC sing 112 n n C20 H203 DXC sing 113 n n C20 H202 DXC sing 114 n n C20 H201 DXC sing 115 n n C21 C22 DXC sing 116 n n C21 H212 DXC sing 117 n n C21 H211 DXC sing 118 n n C22 C23 DXC sing 119 n n C22 H222 DXC sing 120 n n C22 H221 DXC sing 121 n n C23 O3 DXC doub 122 n n C23 O4 DXC sing 123 n n O4 HO4 DXC sing 124 n n C24 H243 DXC sing 125 n n C24 H242 DXC sing 126 n n C24 H241 DXC sing 127 n n # _atom_sites.entry_id 4HDL _atom_sites.fract_transf_matrix[1][1] 0.03096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 72 72 HEC HEM . C 2 HEC A 1 73 73 HEC HEM . D 2 HEC A 1 74 74 HEC HEM . E 3 DXC A 1 75 75 DXC DXC . F 4 SO4 A 1 76 76 SO4 SO4 . G 4 SO4 A 1 77 77 SO4 SO4 . H 4 SO4 A 1 78 78 SO4 SO4 . I 5 HOH A 1 101 100 HOH HOH . I 5 HOH A 2 102 101 HOH HOH . I 5 HOH A 3 103 102 HOH HOH . I 5 HOH A 4 104 103 HOH HOH . I 5 HOH A 5 105 104 HOH HOH . I 5 HOH A 6 106 105 HOH HOH . I 5 HOH A 7 107 106 HOH HOH . I 5 HOH A 8 108 107 HOH HOH . I 5 HOH A 9 109 108 HOH HOH . I 5 HOH A 10 110 109 HOH HOH . I 5 HOH A 11 111 110 HOH HOH . I 5 HOH A 12 112 111 HOH HOH . I 5 HOH A 13 113 112 HOH HOH . I 5 HOH A 14 114 113 HOH HOH . I 5 HOH A 15 115 114 HOH HOH . I 5 HOH A 16 116 115 HOH HOH . I 5 HOH A 17 117 116 HOH HOH . I 5 HOH A 18 118 117 HOH HOH . I 5 HOH A 19 119 118 HOH HOH . I 5 HOH A 20 120 119 HOH HOH . I 5 HOH A 21 121 120 HOH HOH . I 5 HOH A 22 122 121 HOH HOH . I 5 HOH A 23 123 122 HOH HOH . I 5 HOH A 24 124 123 HOH HOH . I 5 HOH A 25 125 124 HOH HOH . I 5 HOH A 26 126 125 HOH HOH . I 5 HOH A 27 127 126 HOH HOH . I 5 HOH A 28 128 127 HOH HOH . I 5 HOH A 29 129 128 HOH HOH . I 5 HOH A 30 130 129 HOH HOH . I 5 HOH A 31 131 130 HOH HOH . I 5 HOH A 32 132 131 HOH HOH . I 5 HOH A 33 133 132 HOH HOH . I 5 HOH A 34 134 133 HOH HOH . I 5 HOH A 35 135 134 HOH HOH . I 5 HOH A 36 136 135 HOH HOH . I 5 HOH A 37 137 136 HOH HOH . I 5 HOH A 38 138 137 HOH HOH . I 5 HOH A 39 139 138 HOH HOH . I 5 HOH A 40 140 139 HOH HOH . I 5 HOH A 41 141 140 HOH HOH . I 5 HOH A 42 142 141 HOH HOH . I 5 HOH A 43 143 142 HOH HOH . I 5 HOH A 44 144 143 HOH HOH . I 5 HOH A 45 145 144 HOH HOH . I 5 HOH A 46 146 145 HOH HOH . I 5 HOH A 47 147 146 HOH HOH . I 5 HOH A 48 148 147 HOH HOH . I 5 HOH A 49 149 148 HOH HOH . I 5 HOH A 50 150 149 HOH HOH . I 5 HOH A 51 151 150 HOH HOH . I 5 HOH A 52 152 151 HOH HOH . I 5 HOH A 53 153 152 HOH HOH . I 5 HOH A 54 154 153 HOH HOH . I 5 HOH A 55 155 154 HOH HOH . I 5 HOH A 56 156 155 HOH HOH . I 5 HOH A 57 157 156 HOH HOH . I 5 HOH A 58 158 157 HOH HOH . I 5 HOH A 59 159 158 HOH HOH . I 5 HOH A 60 160 159 HOH HOH . I 5 HOH A 61 161 160 HOH HOH . I 5 HOH A 62 162 161 HOH HOH . I 5 HOH A 63 163 162 HOH HOH . I 5 HOH A 64 164 163 HOH HOH . I 5 HOH A 65 165 164 HOH HOH . I 5 HOH A 66 166 165 HOH HOH . I 5 HOH A 67 167 166 HOH HOH . I 5 HOH A 68 168 167 HOH HOH . I 5 HOH A 69 169 168 HOH HOH . I 5 HOH A 70 170 169 HOH HOH . I 5 HOH A 71 171 170 HOH HOH . I 5 HOH A 72 172 171 HOH HOH . I 5 HOH A 73 173 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DXC . . . E 3 26.012 32.144 22.39 1 7.19 ? C1 DXC 75 A 1 HETATM 2 C C2 DXC . . . E 3 25.825 31.503 20.992 1 7.1 ? C2 DXC 75 A 1 HETATM 3 C C3 DXC . . . E 3 27.095 30.747 20.551 1 6.86 ? C3 DXC 75 A 1 HETATM 4 C C4 DXC . . . E 3 28.389 31.611 20.606 1 6.85 ? C4 DXC 75 A 1 HETATM 5 C C5 DXC . . . E 3 28.501 32.278 21.986 1 6.53 ? C5 DXC 75 A 1 HETATM 6 C C6 DXC . . . E 3 27.243 33.059 22.357 1 6.87 ? C6 DXC 75 A 1 HETATM 7 C C7 DXC . . . E 3 26.875 30.093 19.165 1 7.15 ? C7 DXC 75 A 1 HETATM 8 C C8 DXC . . . E 3 26.924 31.121 18.025 1 6.57 ? C8 DXC 75 A 1 HETATM 9 C C9 DXC . . . E 3 28.187 32.007 18.09 1 7.82 ? C9 DXC 75 A 1 HETATM 10 C C10 DXC . . . E 3 28.408 32.642 19.475 1 8.05 ? C10 DXC 75 A 1 HETATM 11 C C11 DXC . . . E 3 28.111 33.149 17.066 1 9.48 ? C11 DXC 75 A 1 HETATM 12 C C12 DXC . . . E 3 29.416 33.929 16.991 1 9.75 ? C12 DXC 75 A 1 HETATM 13 C C13 DXC . . . E 3 29.662 34.616 18.354 1 9.3 ? C13 DXC 75 A 1 HETATM 14 C C14 DXC . . . E 3 29.68 33.568 19.483 1 7.34 ? C14 DXC 75 A 1 HETATM 15 C C15 DXC . . . E 3 27.887 32.718 15.613 1 9.72 ? C15 DXC 75 A 1 HETATM 16 C C16 DXC . . . E 3 28.432 33.902 14.793 1 11.26 ? C16 DXC 75 A 1 HETATM 17 C C17 DXC . . . E 3 29.045 34.872 15.816 1 11.92 ? C17 DXC 75 A 1 HETATM 18 C C18 DXC . . . E 3 29.582 30.652 20.49 1 7.11 ? C18 DXC 75 A 1 HETATM 19 C C19 DXC . . . E 3 30.211 35.676 15.167 1 13.97 ? C19 DXC 75 A 1 HETATM 20 O O1 DXC . . . E 3 28.652 35.592 18.676 1 9.48 ? O1 DXC 75 A 1 HETATM 21 O O2 DXC . . . E 3 24.863 32.936 22.697 1 8.01 ? O2 DXC 75 A 1 HETATM 22 C C20 DXC . . . E 3 30.599 33.006 16.644 1 8.63 ? C20 DXC 75 A 1 HETATM 23 C C21 DXC . . . E 3 29.769 36.354 13.859 1 17.38 ? C21 DXC 75 A 1 HETATM 24 C C22 DXC . . . E 3 28.62 37.335 14.049 1 20.57 ? C22 DXC 75 A 1 HETATM 25 C C23 DXC . . . E 3 29.124 38.755 14.244 1 24.26 ? C23 DXC 75 A 1 HETATM 26 O O3 DXC . . . E 3 29.813 39.293 13.369 1 26.44 ? O3 DXC 75 A 1 HETATM 27 O O4 DXC . . . E 3 28.835 39.365 15.275 1 25.83 ? O4 DXC 75 A 1 HETATM 28 C C24 DXC . . . E 3 30.814 36.699 16.13 1 13.46 ? C24 DXC 75 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #