data_4HDO # _model_server_result.job_id QfNNi53a3vosdHEfiNx44A _model_server_result.datetime_utc '2024-10-12 19:21:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 4HDO # _exptl.entry_id 4HDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.2 _cell.angle_gamma 90 _cell.entry_id 4HDO _cell.length_a 57.85 _cell.length_b 77.75 _cell.length_c 58.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 17 B SER 17 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 B OG1 THR 35 B THR 35 1_555 D MG MG . B MG 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc3 D MG MG . B MG 200 1_555 E O1B GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc4 D MG MG . B MG 200 1_555 E O1G GNP . B GNP 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc5 D MG MG . B MG 200 1_555 G O HOH . B HOH 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc6 D MG MG . B MG 200 1_555 G O HOH . B HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 180 n n C1 C2 GOL sing 181 n n C1 H11 GOL sing 182 n n C1 H12 GOL sing 183 n n O1 HO1 GOL sing 184 n n C2 O2 GOL sing 185 n n C2 C3 GOL sing 186 n n C2 H2 GOL sing 187 n n O2 HO2 GOL sing 188 n n C3 O3 GOL sing 189 n n C3 H31 GOL sing 190 n n C3 H32 GOL sing 191 n n O3 HO3 GOL sing 192 n n # _atom_sites.entry_id 4HDO _atom_sites.fract_transf_matrix[1][1] 0.017286 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000362 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 801 1 GOL GOL . D 4 MG B 1 200 200 MG MG . E 5 GNP B 1 201 201 GNP GNP . F 6 HOH A 1 901 1 HOH HOH . F 6 HOH A 2 902 2 HOH HOH . F 6 HOH A 3 903 3 HOH HOH . F 6 HOH A 4 904 4 HOH HOH . F 6 HOH A 5 905 5 HOH HOH . F 6 HOH A 6 906 7 HOH HOH . F 6 HOH A 7 907 8 HOH HOH . F 6 HOH A 8 908 10 HOH HOH . F 6 HOH A 9 909 11 HOH HOH . F 6 HOH A 10 910 12 HOH HOH . F 6 HOH A 11 911 13 HOH HOH . F 6 HOH A 12 912 14 HOH HOH . F 6 HOH A 13 913 15 HOH HOH . F 6 HOH A 14 914 17 HOH HOH . F 6 HOH A 15 915 18 HOH HOH . F 6 HOH A 16 916 19 HOH HOH . F 6 HOH A 17 917 20 HOH HOH . F 6 HOH A 18 918 21 HOH HOH . F 6 HOH A 19 919 22 HOH HOH . F 6 HOH A 20 920 23 HOH HOH . F 6 HOH A 21 921 24 HOH HOH . F 6 HOH A 22 922 25 HOH HOH . F 6 HOH A 23 923 26 HOH HOH . F 6 HOH A 24 924 28 HOH HOH . F 6 HOH A 25 925 31 HOH HOH . F 6 HOH A 26 926 32 HOH HOH . F 6 HOH A 27 927 33 HOH HOH . F 6 HOH A 28 928 35 HOH HOH . F 6 HOH A 29 929 36 HOH HOH . F 6 HOH A 30 930 37 HOH HOH . F 6 HOH A 31 931 38 HOH HOH . F 6 HOH A 32 932 40 HOH HOH . F 6 HOH A 33 933 41 HOH HOH . F 6 HOH A 34 934 44 HOH HOH . F 6 HOH A 35 935 46 HOH HOH . F 6 HOH A 36 936 47 HOH HOH . F 6 HOH A 37 937 48 HOH HOH . F 6 HOH A 38 938 49 HOH HOH . F 6 HOH A 39 939 50 HOH HOH . F 6 HOH A 40 940 51 HOH HOH . F 6 HOH A 41 941 52 HOH HOH . F 6 HOH A 42 942 53 HOH HOH . F 6 HOH A 43 943 54 HOH HOH . F 6 HOH A 44 944 55 HOH HOH . F 6 HOH A 45 945 56 HOH HOH . F 6 HOH A 46 946 57 HOH HOH . F 6 HOH A 47 947 58 HOH HOH . F 6 HOH A 48 948 59 HOH HOH . F 6 HOH A 49 949 65 HOH HOH . F 6 HOH A 50 950 70 HOH HOH . F 6 HOH A 51 951 71 HOH HOH . F 6 HOH A 52 952 72 HOH HOH . F 6 HOH A 53 953 73 HOH HOH . F 6 HOH A 54 954 75 HOH HOH . F 6 HOH A 55 955 76 HOH HOH . F 6 HOH A 56 956 77 HOH HOH . F 6 HOH A 57 957 79 HOH HOH . F 6 HOH A 58 958 81 HOH HOH . F 6 HOH A 59 959 82 HOH HOH . F 6 HOH A 60 960 83 HOH HOH . F 6 HOH A 61 961 84 HOH HOH . F 6 HOH A 62 962 85 HOH HOH . F 6 HOH A 63 963 86 HOH HOH . F 6 HOH A 64 964 89 HOH HOH . F 6 HOH A 65 965 90 HOH HOH . F 6 HOH A 66 966 92 HOH HOH . F 6 HOH A 67 967 96 HOH HOH . F 6 HOH A 68 968 97 HOH HOH . F 6 HOH A 69 969 98 HOH HOH . F 6 HOH A 70 970 99 HOH HOH . F 6 HOH A 71 971 100 HOH HOH . F 6 HOH A 72 972 105 HOH HOH . F 6 HOH A 73 973 107 HOH HOH . F 6 HOH A 74 974 108 HOH HOH . F 6 HOH A 75 975 109 HOH HOH . F 6 HOH A 76 976 110 HOH HOH . F 6 HOH A 77 977 111 HOH HOH . F 6 HOH A 78 978 113 HOH HOH . F 6 HOH A 79 979 114 HOH HOH . F 6 HOH A 80 980 115 HOH HOH . F 6 HOH A 81 981 118 HOH HOH . F 6 HOH A 82 982 120 HOH HOH . F 6 HOH A 83 983 121 HOH HOH . F 6 HOH A 84 984 122 HOH HOH . F 6 HOH A 85 985 123 HOH HOH . F 6 HOH A 86 986 124 HOH HOH . F 6 HOH A 87 987 125 HOH HOH . F 6 HOH A 88 988 126 HOH HOH . F 6 HOH A 89 989 131 HOH HOH . F 6 HOH A 90 990 133 HOH HOH . F 6 HOH A 91 991 136 HOH HOH . F 6 HOH A 92 992 139 HOH HOH . F 6 HOH A 93 993 140 HOH HOH . F 6 HOH A 94 994 141 HOH HOH . F 6 HOH A 95 995 146 HOH HOH . F 6 HOH A 96 996 147 HOH HOH . F 6 HOH A 97 997 148 HOH HOH . F 6 HOH A 98 998 149 HOH HOH . F 6 HOH A 99 999 150 HOH HOH . F 6 HOH A 100 1000 152 HOH HOH . F 6 HOH A 101 1001 154 HOH HOH . F 6 HOH A 102 1002 155 HOH HOH . F 6 HOH A 103 1003 156 HOH HOH . F 6 HOH A 104 1004 160 HOH HOH . F 6 HOH A 105 1005 161 HOH HOH . F 6 HOH A 106 1006 165 HOH HOH . F 6 HOH A 107 1007 167 HOH HOH . F 6 HOH A 108 1008 168 HOH HOH . F 6 HOH A 109 1009 170 HOH HOH . F 6 HOH A 110 1010 171 HOH HOH . F 6 HOH A 111 1011 173 HOH HOH . F 6 HOH A 112 1012 174 HOH HOH . F 6 HOH A 113 1013 176 HOH HOH . F 6 HOH A 114 1014 178 HOH HOH . F 6 HOH A 115 1015 179 HOH HOH . F 6 HOH A 116 1016 183 HOH HOH . F 6 HOH A 117 1017 188 HOH HOH . F 6 HOH A 118 1018 190 HOH HOH . F 6 HOH A 119 1019 194 HOH HOH . F 6 HOH A 120 1020 195 HOH HOH . F 6 HOH A 121 1021 197 HOH HOH . F 6 HOH A 122 1022 199 HOH HOH . F 6 HOH A 123 1023 200 HOH HOH . F 6 HOH A 124 1024 203 HOH HOH . F 6 HOH A 125 1025 206 HOH HOH . F 6 HOH A 126 1026 212 HOH HOH . F 6 HOH A 127 1027 214 HOH HOH . F 6 HOH A 128 1028 215 HOH HOH . F 6 HOH A 129 1029 216 HOH HOH . F 6 HOH A 130 1030 219 HOH HOH . F 6 HOH A 131 1031 220 HOH HOH . F 6 HOH A 132 1032 221 HOH HOH . F 6 HOH A 133 1033 222 HOH HOH . F 6 HOH A 134 1034 223 HOH HOH . F 6 HOH A 135 1035 225 HOH HOH . F 6 HOH A 136 1036 226 HOH HOH . F 6 HOH A 137 1037 227 HOH HOH . F 6 HOH A 138 1038 229 HOH HOH . F 6 HOH A 139 1039 231 HOH HOH . F 6 HOH A 140 1040 233 HOH HOH . F 6 HOH A 141 1041 234 HOH HOH . F 6 HOH A 142 1042 235 HOH HOH . F 6 HOH A 143 1043 237 HOH HOH . F 6 HOH A 144 1044 240 HOH HOH . F 6 HOH A 145 1045 241 HOH HOH . F 6 HOH A 146 1046 244 HOH HOH . F 6 HOH A 147 1047 245 HOH HOH . F 6 HOH A 148 1048 246 HOH HOH . F 6 HOH A 149 1049 248 HOH HOH . F 6 HOH A 150 1050 250 HOH HOH . F 6 HOH A 151 1051 251 HOH HOH . F 6 HOH A 152 1052 252 HOH HOH . F 6 HOH A 153 1053 253 HOH HOH . F 6 HOH A 154 1054 254 HOH HOH . F 6 HOH A 155 1055 255 HOH HOH . F 6 HOH A 156 1056 256 HOH HOH . F 6 HOH A 157 1057 257 HOH HOH . F 6 HOH A 158 1058 258 HOH HOH . F 6 HOH A 159 1059 259 HOH HOH . F 6 HOH A 160 1060 260 HOH HOH . F 6 HOH A 161 1061 261 HOH HOH . F 6 HOH A 162 1062 265 HOH HOH . F 6 HOH A 163 1063 267 HOH HOH . F 6 HOH A 164 1064 268 HOH HOH . F 6 HOH A 165 1065 285 HOH HOH . G 6 HOH B 1 301 6 HOH HOH . G 6 HOH B 2 302 9 HOH HOH . G 6 HOH B 3 303 16 HOH HOH . G 6 HOH B 4 304 27 HOH HOH . G 6 HOH B 5 305 29 HOH HOH . G 6 HOH B 6 306 30 HOH HOH . G 6 HOH B 7 307 39 HOH HOH . G 6 HOH B 8 308 42 HOH HOH . G 6 HOH B 9 309 43 HOH HOH . G 6 HOH B 10 310 45 HOH HOH . G 6 HOH B 11 311 60 HOH HOH . G 6 HOH B 12 312 61 HOH HOH . G 6 HOH B 13 313 62 HOH HOH . G 6 HOH B 14 314 63 HOH HOH . G 6 HOH B 15 315 64 HOH HOH . G 6 HOH B 16 316 66 HOH HOH . G 6 HOH B 17 317 67 HOH HOH . G 6 HOH B 18 318 68 HOH HOH . G 6 HOH B 19 319 69 HOH HOH . G 6 HOH B 20 320 74 HOH HOH . G 6 HOH B 21 321 80 HOH HOH . G 6 HOH B 22 322 87 HOH HOH . G 6 HOH B 23 323 88 HOH HOH . G 6 HOH B 24 324 91 HOH HOH . G 6 HOH B 25 325 93 HOH HOH . G 6 HOH B 26 326 94 HOH HOH . G 6 HOH B 27 327 95 HOH HOH . G 6 HOH B 28 328 101 HOH HOH . G 6 HOH B 29 329 102 HOH HOH . G 6 HOH B 30 330 103 HOH HOH . G 6 HOH B 31 331 104 HOH HOH . G 6 HOH B 32 332 106 HOH HOH . G 6 HOH B 33 333 112 HOH HOH . G 6 HOH B 34 334 116 HOH HOH . G 6 HOH B 35 335 117 HOH HOH . G 6 HOH B 36 336 119 HOH HOH . G 6 HOH B 37 337 127 HOH HOH . G 6 HOH B 38 338 128 HOH HOH . G 6 HOH B 39 339 129 HOH HOH . G 6 HOH B 40 340 130 HOH HOH . G 6 HOH B 41 341 134 HOH HOH . G 6 HOH B 42 342 135 HOH HOH . G 6 HOH B 43 343 137 HOH HOH . G 6 HOH B 44 344 138 HOH HOH . G 6 HOH B 45 345 142 HOH HOH . G 6 HOH B 46 346 143 HOH HOH . G 6 HOH B 47 347 144 HOH HOH . G 6 HOH B 48 348 151 HOH HOH . G 6 HOH B 49 349 157 HOH HOH . G 6 HOH B 50 350 158 HOH HOH . G 6 HOH B 51 351 159 HOH HOH . G 6 HOH B 52 352 162 HOH HOH . G 6 HOH B 53 353 163 HOH HOH . G 6 HOH B 54 354 164 HOH HOH . G 6 HOH B 55 355 166 HOH HOH . G 6 HOH B 56 356 169 HOH HOH . G 6 HOH B 57 357 172 HOH HOH . G 6 HOH B 58 358 175 HOH HOH . G 6 HOH B 59 359 177 HOH HOH . G 6 HOH B 60 360 180 HOH HOH . G 6 HOH B 61 361 181 HOH HOH . G 6 HOH B 62 362 184 HOH HOH . G 6 HOH B 63 363 185 HOH HOH . G 6 HOH B 64 364 187 HOH HOH . G 6 HOH B 65 365 189 HOH HOH . G 6 HOH B 66 366 191 HOH HOH . G 6 HOH B 67 367 192 HOH HOH . G 6 HOH B 68 368 193 HOH HOH . G 6 HOH B 69 369 196 HOH HOH . G 6 HOH B 70 370 202 HOH HOH . G 6 HOH B 71 371 204 HOH HOH . G 6 HOH B 72 372 207 HOH HOH . G 6 HOH B 73 373 210 HOH HOH . G 6 HOH B 74 374 211 HOH HOH . G 6 HOH B 75 375 213 HOH HOH . G 6 HOH B 76 376 217 HOH HOH . G 6 HOH B 77 377 218 HOH HOH . G 6 HOH B 78 378 224 HOH HOH . G 6 HOH B 79 379 228 HOH HOH . G 6 HOH B 80 380 230 HOH HOH . G 6 HOH B 81 381 232 HOH HOH . G 6 HOH B 82 382 236 HOH HOH . G 6 HOH B 83 383 238 HOH HOH . G 6 HOH B 84 384 239 HOH HOH . G 6 HOH B 85 385 242 HOH HOH . G 6 HOH B 86 386 243 HOH HOH . G 6 HOH B 87 387 247 HOH HOH . G 6 HOH B 88 388 249 HOH HOH . G 6 HOH B 89 389 264 HOH HOH . G 6 HOH B 90 390 269 HOH HOH . G 6 HOH B 91 391 270 HOH HOH . G 6 HOH B 92 392 271 HOH HOH . G 6 HOH B 93 393 272 HOH HOH . G 6 HOH B 94 394 273 HOH HOH . G 6 HOH B 95 395 274 HOH HOH . G 6 HOH B 96 396 275 HOH HOH . G 6 HOH B 97 397 277 HOH HOH . G 6 HOH B 98 398 278 HOH HOH . G 6 HOH B 99 399 279 HOH HOH . G 6 HOH B 100 400 280 HOH HOH . G 6 HOH B 101 401 281 HOH HOH . G 6 HOH B 102 402 283 HOH HOH . G 6 HOH B 103 403 284 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 46.383 26.01 7.361 1 34.08 ? C1 GOL 801 A 1 HETATM 2 O O1 GOL . . . C 3 45.111 25.506 6.932 1 34.71 ? O1 GOL 801 A 1 HETATM 3 C C2 GOL . . . C 3 47.515 25.164 6.785 1 33.82 ? C2 GOL 801 A 1 HETATM 4 O O2 GOL . . . C 3 47.317 23.775 7.099 1 33.98 ? O2 GOL 801 A 1 HETATM 5 C C3 GOL . . . C 3 48.857 25.681 7.316 1 33.03 ? C3 GOL 801 A 1 HETATM 6 O O3 GOL . . . C 3 49.444 24.799 8.281 1 32.29 ? O3 GOL 801 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 6 #