data_4HDP # _model_server_result.job_id XWSpxAM0hJhcNlilVImagw _model_server_result.datetime_utc '2024-11-25 09:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 4HDP # _exptl.entry_id 4HDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HDP _cell.length_a 58.592 _cell.length_b 85.945 _cell.length_c 46.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 B ASP 60 1_555 D NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 D NA NA . B NA 402 1_555 L O HOH . B HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc3 D NA NA . B NA 402 1_555 L O HOH . B HOH 1018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 D NA NA . B NA 402 1_555 L O HOH . B HOH 1019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 D NA NA . B NA 402 1_555 L O HOH . B HOH 1021 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc6 D NA NA . B NA 402 1_555 L O HOH . B HOH 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc7 B O ASP 60 A ASP 60 1_555 H NA NA . A NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 H NA NA . A NA 101 1_555 M O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc9 H NA NA . A NA 101 1_555 M O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc10 H NA NA . A NA 101 1_555 M O HOH . A HOH 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HDP _atom_sites.fract_transf_matrix[1][1] 0.017067 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011635 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G52 B 1 401 401 G52 G52 . D 3 NA B 1 402 501 NA NA . E 4 CL B 1 403 550 CL CL . F 4 CL B 1 404 552 CL CL . G 4 CL B 1 405 553 CL CL . H 3 NA A 1 101 502 NA NA . I 4 CL A 1 102 551 CL CL . J 4 CL A 1 103 554 CL CL . K 4 CL A 1 104 556 CL CL . L 5 HOH B 1 1001 1001 HOH HOH . L 5 HOH B 2 1002 1002 HOH HOH . L 5 HOH B 3 1003 1003 HOH HOH . L 5 HOH B 4 1004 1004 HOH HOH . L 5 HOH B 5 1005 1005 HOH HOH . L 5 HOH B 6 1006 1006 HOH HOH . L 5 HOH B 7 1007 1007 HOH HOH . L 5 HOH B 8 1008 1008 HOH HOH . L 5 HOH B 9 1009 1010 HOH HOH . L 5 HOH B 10 1010 1013 HOH HOH . L 5 HOH B 11 1011 1014 HOH HOH . L 5 HOH B 12 1012 1015 HOH HOH . L 5 HOH B 13 1013 1017 HOH HOH . L 5 HOH B 14 1014 1018 HOH HOH . L 5 HOH B 15 1015 1019 HOH HOH . L 5 HOH B 16 1016 1020 HOH HOH . L 5 HOH B 17 1017 1021 HOH HOH . L 5 HOH B 18 1018 1022 HOH HOH . L 5 HOH B 19 1019 1023 HOH HOH . L 5 HOH B 20 1020 1024 HOH HOH . L 5 HOH B 21 1021 1025 HOH HOH . L 5 HOH B 22 1022 1026 HOH HOH . L 5 HOH B 23 1023 1027 HOH HOH . L 5 HOH B 24 1024 1028 HOH HOH . L 5 HOH B 25 1025 1030 HOH HOH . L 5 HOH B 26 1026 1034 HOH HOH . L 5 HOH B 27 1027 1035 HOH HOH . L 5 HOH B 28 1028 1036 HOH HOH . L 5 HOH B 29 1029 1037 HOH HOH . L 5 HOH B 30 1030 1038 HOH HOH . L 5 HOH B 31 1031 1039 HOH HOH . L 5 HOH B 32 1032 1041 HOH HOH . L 5 HOH B 33 1033 1042 HOH HOH . L 5 HOH B 34 1034 1043 HOH HOH . L 5 HOH B 35 1035 1044 HOH HOH . L 5 HOH B 36 1036 1045 HOH HOH . L 5 HOH B 37 1037 1046 HOH HOH . L 5 HOH B 38 1038 1047 HOH HOH . L 5 HOH B 39 1039 1050 HOH HOH . L 5 HOH B 40 1040 1052 HOH HOH . L 5 HOH B 41 1041 1054 HOH HOH . L 5 HOH B 42 1042 1055 HOH HOH . L 5 HOH B 43 1043 1056 HOH HOH . L 5 HOH B 44 1044 1058 HOH HOH . L 5 HOH B 45 1045 1082 HOH HOH . L 5 HOH B 46 1046 1104 HOH HOH . L 5 HOH B 47 1047 1105 HOH HOH . L 5 HOH B 48 1048 1106 HOH HOH . L 5 HOH B 49 1049 1108 HOH HOH . L 5 HOH B 50 1050 1109 HOH HOH . L 5 HOH B 51 1051 1110 HOH HOH . L 5 HOH B 52 1052 1111 HOH HOH . L 5 HOH B 53 1053 1112 HOH HOH . L 5 HOH B 54 1054 1113 HOH HOH . L 5 HOH B 55 1055 1115 HOH HOH . L 5 HOH B 56 1056 1116 HOH HOH . L 5 HOH B 57 1057 1117 HOH HOH . L 5 HOH B 58 1058 1118 HOH HOH . L 5 HOH B 59 1059 1119 HOH HOH . L 5 HOH B 60 1060 1120 HOH HOH . L 5 HOH B 61 1061 1121 HOH HOH . L 5 HOH B 62 1062 1122 HOH HOH . L 5 HOH B 63 1063 1123 HOH HOH . L 5 HOH B 64 1064 1124 HOH HOH . L 5 HOH B 65 1065 1125 HOH HOH . L 5 HOH B 66 1066 1127 HOH HOH . L 5 HOH B 67 1067 1129 HOH HOH . L 5 HOH B 68 1068 1131 HOH HOH . L 5 HOH B 69 1069 1135 HOH HOH . L 5 HOH B 70 1070 1136 HOH HOH . L 5 HOH B 71 1071 1137 HOH HOH . L 5 HOH B 72 1072 1138 HOH HOH . L 5 HOH B 73 1073 1139 HOH HOH . L 5 HOH B 74 1074 1140 HOH HOH . L 5 HOH B 75 1075 1145 HOH HOH . L 5 HOH B 76 1076 1146 HOH HOH . L 5 HOH B 77 1077 1147 HOH HOH . L 5 HOH B 78 1078 1148 HOH HOH . L 5 HOH B 79 1079 1149 HOH HOH . L 5 HOH B 80 1080 1150 HOH HOH . L 5 HOH B 81 1081 1151 HOH HOH . L 5 HOH B 82 1082 1152 HOH HOH . L 5 HOH B 83 1083 1153 HOH HOH . L 5 HOH B 84 1084 1155 HOH HOH . L 5 HOH B 85 1085 1156 HOH HOH . L 5 HOH B 86 1086 1157 HOH HOH . L 5 HOH B 87 1087 1159 HOH HOH . L 5 HOH B 88 1088 1167 HOH HOH . L 5 HOH B 89 1089 1170 HOH HOH . L 5 HOH B 90 1090 1171 HOH HOH . L 5 HOH B 91 1091 1172 HOH HOH . L 5 HOH B 92 1092 1173 HOH HOH . L 5 HOH B 93 1093 1174 HOH HOH . L 5 HOH B 94 1094 1175 HOH HOH . L 5 HOH B 95 1095 1176 HOH HOH . L 5 HOH B 96 1096 1185 HOH HOH . L 5 HOH B 97 1097 1190 HOH HOH . L 5 HOH B 98 1098 1191 HOH HOH . L 5 HOH B 99 1099 1192 HOH HOH . L 5 HOH B 100 1100 1193 HOH HOH . L 5 HOH B 101 1101 1194 HOH HOH . L 5 HOH B 102 1102 1196 HOH HOH . L 5 HOH B 103 1103 1206 HOH HOH . L 5 HOH B 104 1104 1207 HOH HOH . L 5 HOH B 105 1105 1208 HOH HOH . L 5 HOH B 106 1106 1209 HOH HOH . L 5 HOH B 107 1107 1210 HOH HOH . L 5 HOH B 108 1108 1211 HOH HOH . L 5 HOH B 109 1109 1212 HOH HOH . L 5 HOH B 110 1110 1213 HOH HOH . L 5 HOH B 111 1111 1217 HOH HOH . L 5 HOH B 112 1112 1218 HOH HOH . L 5 HOH B 113 1113 1219 HOH HOH . L 5 HOH B 114 1114 1220 HOH HOH . L 5 HOH B 115 1115 1224 HOH HOH . L 5 HOH B 116 1116 1225 HOH HOH . L 5 HOH B 117 1117 1226 HOH HOH . L 5 HOH B 118 1118 1227 HOH HOH . L 5 HOH B 119 1119 1228 HOH HOH . L 5 HOH B 120 1120 1230 HOH HOH . L 5 HOH B 121 1121 1231 HOH HOH . L 5 HOH B 122 1122 1236 HOH HOH . L 5 HOH B 123 1123 1237 HOH HOH . L 5 HOH B 124 1124 1241 HOH HOH . L 5 HOH B 125 1125 1243 HOH HOH . M 5 HOH A 1 201 1000 HOH HOH . M 5 HOH A 2 202 1009 HOH HOH . M 5 HOH A 3 203 1011 HOH HOH . M 5 HOH A 4 204 1012 HOH HOH . M 5 HOH A 5 205 1016 HOH HOH . M 5 HOH A 6 206 1029 HOH HOH . M 5 HOH A 7 207 1031 HOH HOH . M 5 HOH A 8 208 1032 HOH HOH . M 5 HOH A 9 209 1033 HOH HOH . M 5 HOH A 10 210 1040 HOH HOH . M 5 HOH A 11 211 1048 HOH HOH . M 5 HOH A 12 212 1049 HOH HOH . M 5 HOH A 13 213 1051 HOH HOH . M 5 HOH A 14 214 1053 HOH HOH . M 5 HOH A 15 215 1057 HOH HOH . M 5 HOH A 16 216 1059 HOH HOH . M 5 HOH A 17 217 1060 HOH HOH . M 5 HOH A 18 218 1061 HOH HOH . M 5 HOH A 19 219 1062 HOH HOH . M 5 HOH A 20 220 1063 HOH HOH . M 5 HOH A 21 221 1064 HOH HOH . M 5 HOH A 22 222 1065 HOH HOH . M 5 HOH A 23 223 1066 HOH HOH . M 5 HOH A 24 224 1067 HOH HOH . M 5 HOH A 25 225 1068 HOH HOH . M 5 HOH A 26 226 1069 HOH HOH . M 5 HOH A 27 227 1070 HOH HOH . M 5 HOH A 28 228 1071 HOH HOH . M 5 HOH A 29 229 1072 HOH HOH . M 5 HOH A 30 230 1073 HOH HOH . M 5 HOH A 31 231 1074 HOH HOH . M 5 HOH A 32 232 1075 HOH HOH . M 5 HOH A 33 233 1076 HOH HOH . M 5 HOH A 34 234 1077 HOH HOH . M 5 HOH A 35 235 1078 HOH HOH . M 5 HOH A 36 236 1079 HOH HOH . M 5 HOH A 37 237 1080 HOH HOH . M 5 HOH A 38 238 1081 HOH HOH . M 5 HOH A 39 239 1083 HOH HOH . M 5 HOH A 40 240 1084 HOH HOH . M 5 HOH A 41 241 1085 HOH HOH . M 5 HOH A 42 242 1086 HOH HOH . M 5 HOH A 43 243 1087 HOH HOH . M 5 HOH A 44 244 1088 HOH HOH . M 5 HOH A 45 245 1089 HOH HOH . M 5 HOH A 46 246 1090 HOH HOH . M 5 HOH A 47 247 1091 HOH HOH . M 5 HOH A 48 248 1092 HOH HOH . M 5 HOH A 49 249 1093 HOH HOH . M 5 HOH A 50 250 1094 HOH HOH . M 5 HOH A 51 251 1095 HOH HOH . M 5 HOH A 52 252 1096 HOH HOH . M 5 HOH A 53 253 1097 HOH HOH . M 5 HOH A 54 254 1098 HOH HOH . M 5 HOH A 55 255 1099 HOH HOH . M 5 HOH A 56 256 1100 HOH HOH . M 5 HOH A 57 257 1101 HOH HOH . M 5 HOH A 58 258 1102 HOH HOH . M 5 HOH A 59 259 1103 HOH HOH . M 5 HOH A 60 260 1107 HOH HOH . M 5 HOH A 61 261 1114 HOH HOH . M 5 HOH A 62 262 1126 HOH HOH . M 5 HOH A 63 263 1128 HOH HOH . M 5 HOH A 64 264 1130 HOH HOH . M 5 HOH A 65 265 1132 HOH HOH . M 5 HOH A 66 266 1133 HOH HOH . M 5 HOH A 67 267 1134 HOH HOH . M 5 HOH A 68 268 1141 HOH HOH . M 5 HOH A 69 269 1142 HOH HOH . M 5 HOH A 70 270 1143 HOH HOH . M 5 HOH A 71 271 1144 HOH HOH . M 5 HOH A 72 272 1154 HOH HOH . M 5 HOH A 73 273 1158 HOH HOH . M 5 HOH A 74 274 1160 HOH HOH . M 5 HOH A 75 275 1161 HOH HOH . M 5 HOH A 76 276 1162 HOH HOH . M 5 HOH A 77 277 1163 HOH HOH . M 5 HOH A 78 278 1164 HOH HOH . M 5 HOH A 79 279 1165 HOH HOH . M 5 HOH A 80 280 1166 HOH HOH . M 5 HOH A 81 281 1168 HOH HOH . M 5 HOH A 82 282 1169 HOH HOH . M 5 HOH A 83 283 1177 HOH HOH . M 5 HOH A 84 284 1178 HOH HOH . M 5 HOH A 85 285 1179 HOH HOH . M 5 HOH A 86 286 1180 HOH HOH . M 5 HOH A 87 287 1181 HOH HOH . M 5 HOH A 88 288 1182 HOH HOH . M 5 HOH A 89 289 1183 HOH HOH . M 5 HOH A 90 290 1184 HOH HOH . M 5 HOH A 91 291 1186 HOH HOH . M 5 HOH A 92 292 1187 HOH HOH . M 5 HOH A 93 293 1188 HOH HOH . M 5 HOH A 94 294 1189 HOH HOH . M 5 HOH A 95 295 1195 HOH HOH . M 5 HOH A 96 296 1197 HOH HOH . M 5 HOH A 97 297 1198 HOH HOH . M 5 HOH A 98 298 1199 HOH HOH . M 5 HOH A 99 299 1200 HOH HOH . M 5 HOH A 100 300 1201 HOH HOH . M 5 HOH A 101 301 1202 HOH HOH . M 5 HOH A 102 302 1203 HOH HOH . M 5 HOH A 103 303 1204 HOH HOH . M 5 HOH A 104 304 1205 HOH HOH . M 5 HOH A 105 305 1214 HOH HOH . M 5 HOH A 106 306 1215 HOH HOH . M 5 HOH A 107 307 1216 HOH HOH . M 5 HOH A 108 308 1221 HOH HOH . M 5 HOH A 109 309 1222 HOH HOH . M 5 HOH A 110 310 1223 HOH HOH . M 5 HOH A 111 311 1229 HOH HOH . M 5 HOH A 112 312 1232 HOH HOH . M 5 HOH A 113 313 1233 HOH HOH . M 5 HOH A 114 314 1234 HOH HOH . M 5 HOH A 115 315 1235 HOH HOH . M 5 HOH A 116 316 1238 HOH HOH . M 5 HOH A 117 317 1239 HOH HOH . M 5 HOH A 118 318 1240 HOH HOH . M 5 HOH A 119 319 1242 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.781 _atom_site.Cartn_y 34.841 _atom_site.Cartn_z -35.287 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 29.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #