data_4HE1 # _model_server_result.job_id '_H_i8v5Nsz4bBoHVlHAetQ' _model_server_result.datetime_utc '2025-03-04 21:57:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4he1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4HE1 # _exptl.entry_id 4HE1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HE1 _cell.length_a 73.818 _cell.length_b 73.818 _cell.length_c 146.575 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HE1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1 0 0 0 -1 0 0 0 1 73.818 -73.818 0 3 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 73.818 -73.818 0 4 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 97 A GLU 97 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A OE1 GLU 97 A GLU 97 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc3 A OD2 ASP 118 A ASP 118 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A OD1 ASP 118 A ASP 118 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc5 A O LEU 120 A LEU 120 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc6 A OD1 ASP 121 A ASP 121 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 A OE2 GLU 280 A GLU 280 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 C O3 PO4 . A PO4 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc9 C O1 PO4 . A PO4 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc10 C O1 PO4 . A PO4 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? metalc ? metalc11 E MG MG . A MG 404 1_555 G O HOH . A HOH 564 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc12 E MG MG . A MG 404 1_555 G O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-6-PHOSPHATE;6-O-phosphono-beta-D-fructose;6-O-phosphono-D-fructose;6-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6P sing 83 n n O1 HO1 F6P sing 84 n n C1 C2 F6P sing 85 n n C1 H11 F6P sing 86 n n C1 H12 F6P sing 87 n n C2 O2 F6P sing 88 n n C2 C3 F6P sing 89 n n C2 O5 F6P sing 90 n n O2 HO2 F6P sing 91 n n C3 O3 F6P sing 92 n n C3 C4 F6P sing 93 n n C3 H3 F6P sing 94 n n O3 HO3 F6P sing 95 n n C4 O4 F6P sing 96 n n C4 C5 F6P sing 97 n n C4 H4 F6P sing 98 n n O4 HO4 F6P sing 99 n n C5 O5 F6P sing 100 n n C5 C6 F6P sing 101 n n C5 H5 F6P sing 102 n n C6 O6 F6P sing 103 n n C6 H61 F6P sing 104 n n C6 H62 F6P sing 105 n n O6 P F6P sing 106 n n P O1P F6P doub 107 n n P O2P F6P sing 108 n n P O3P F6P sing 109 n n O2P HOP2 F6P sing 110 n n O3P HOP3 F6P sing 111 n n # _pdbx_chem_comp_identifier.comp_id F6P _pdbx_chem_comp_identifier.identifier b-D-Fruf6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 4HE1 _atom_sites.fract_transf_matrix[1][1] 0.013547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F6P A 1 401 340 F6P F6P . C 3 PO4 A 1 402 341 PO4 PO4 . D 4 MG A 1 403 351 MG MG . E 4 MG A 1 404 352 MG MG . F 5 CL A 1 405 360 CL CL . G 6 HOH A 1 501 2 HOH HOH . G 6 HOH A 2 502 3 HOH HOH . G 6 HOH A 3 503 6 HOH HOH . G 6 HOH A 4 504 7 HOH HOH . G 6 HOH A 5 505 8 HOH HOH . G 6 HOH A 6 506 9 HOH HOH . G 6 HOH A 7 507 10 HOH HOH . G 6 HOH A 8 508 11 HOH HOH . G 6 HOH A 9 509 12 HOH HOH . G 6 HOH A 10 510 13 HOH HOH . G 6 HOH A 11 511 14 HOH HOH . G 6 HOH A 12 512 15 HOH HOH . G 6 HOH A 13 513 16 HOH HOH . G 6 HOH A 14 514 17 HOH HOH . G 6 HOH A 15 515 18 HOH HOH . G 6 HOH A 16 516 19 HOH HOH . G 6 HOH A 17 517 20 HOH HOH . G 6 HOH A 18 518 21 HOH HOH . G 6 HOH A 19 519 23 HOH HOH . G 6 HOH A 20 520 24 HOH HOH . G 6 HOH A 21 521 25 HOH HOH . G 6 HOH A 22 522 27 HOH HOH . G 6 HOH A 23 523 28 HOH HOH . G 6 HOH A 24 524 29 HOH HOH . G 6 HOH A 25 525 30 HOH HOH . G 6 HOH A 26 526 31 HOH HOH . G 6 HOH A 27 527 32 HOH HOH . G 6 HOH A 28 528 33 HOH HOH . G 6 HOH A 29 529 34 HOH HOH . G 6 HOH A 30 530 35 HOH HOH . G 6 HOH A 31 531 36 HOH HOH . G 6 HOH A 32 532 37 HOH HOH . G 6 HOH A 33 533 38 HOH HOH . G 6 HOH A 34 534 39 HOH HOH . G 6 HOH A 35 535 40 HOH HOH . G 6 HOH A 36 536 41 HOH HOH . G 6 HOH A 37 537 42 HOH HOH . G 6 HOH A 38 538 43 HOH HOH . G 6 HOH A 39 539 44 HOH HOH . G 6 HOH A 40 540 46 HOH HOH . G 6 HOH A 41 541 48 HOH HOH . G 6 HOH A 42 542 49 HOH HOH . G 6 HOH A 43 543 51 HOH HOH . G 6 HOH A 44 544 52 HOH HOH . G 6 HOH A 45 545 54 HOH HOH . G 6 HOH A 46 546 55 HOH HOH . G 6 HOH A 47 547 56 HOH HOH . G 6 HOH A 48 548 57 HOH HOH . G 6 HOH A 49 549 58 HOH HOH . G 6 HOH A 50 550 59 HOH HOH . G 6 HOH A 51 551 61 HOH HOH . G 6 HOH A 52 552 62 HOH HOH . G 6 HOH A 53 553 63 HOH HOH . G 6 HOH A 54 554 64 HOH HOH . G 6 HOH A 55 555 65 HOH HOH . G 6 HOH A 56 556 66 HOH HOH . G 6 HOH A 57 557 67 HOH HOH . G 6 HOH A 58 558 68 HOH HOH . G 6 HOH A 59 559 69 HOH HOH . G 6 HOH A 60 560 70 HOH HOH . G 6 HOH A 61 561 71 HOH HOH . G 6 HOH A 62 562 73 HOH HOH . G 6 HOH A 63 563 74 HOH HOH . G 6 HOH A 64 564 75 HOH HOH . G 6 HOH A 65 565 76 HOH HOH . G 6 HOH A 66 566 77 HOH HOH . G 6 HOH A 67 567 78 HOH HOH . G 6 HOH A 68 568 79 HOH HOH . G 6 HOH A 69 569 80 HOH HOH . G 6 HOH A 70 570 81 HOH HOH . G 6 HOH A 71 571 82 HOH HOH . G 6 HOH A 72 572 84 HOH HOH . G 6 HOH A 73 573 85 HOH HOH . G 6 HOH A 74 574 86 HOH HOH . G 6 HOH A 75 575 88 HOH HOH . G 6 HOH A 76 576 92 HOH HOH . G 6 HOH A 77 577 96 HOH HOH . G 6 HOH A 78 578 99 HOH HOH . G 6 HOH A 79 579 107 HOH HOH . G 6 HOH A 80 580 109 HOH HOH . G 6 HOH A 81 581 110 HOH HOH . G 6 HOH A 82 582 112 HOH HOH . G 6 HOH A 83 583 113 HOH HOH . G 6 HOH A 84 584 120 HOH HOH . G 6 HOH A 85 585 121 HOH HOH . G 6 HOH A 86 586 127 HOH HOH . G 6 HOH A 87 587 130 HOH HOH . G 6 HOH A 88 588 132 HOH HOH . G 6 HOH A 89 589 133 HOH HOH . G 6 HOH A 90 590 136 HOH HOH . G 6 HOH A 91 591 138 HOH HOH . G 6 HOH A 92 592 144 HOH HOH . G 6 HOH A 93 593 148 HOH HOH . G 6 HOH A 94 594 152 HOH HOH . G 6 HOH A 95 595 156 HOH HOH . G 6 HOH A 96 596 157 HOH HOH . G 6 HOH A 97 597 160 HOH HOH . G 6 HOH A 98 598 162 HOH HOH . G 6 HOH A 99 599 163 HOH HOH . G 6 HOH A 100 600 164 HOH HOH . G 6 HOH A 101 601 165 HOH HOH . G 6 HOH A 102 602 166 HOH HOH . G 6 HOH A 103 603 167 HOH HOH . G 6 HOH A 104 604 168 HOH HOH . G 6 HOH A 105 605 170 HOH HOH . G 6 HOH A 106 606 171 HOH HOH . G 6 HOH A 107 607 172 HOH HOH . G 6 HOH A 108 608 176 HOH HOH . G 6 HOH A 109 609 180 HOH HOH . G 6 HOH A 110 610 183 HOH HOH . G 6 HOH A 111 611 185 HOH HOH . G 6 HOH A 112 612 187 HOH HOH . G 6 HOH A 113 613 189 HOH HOH . G 6 HOH A 114 614 190 HOH HOH . G 6 HOH A 115 615 191 HOH HOH . G 6 HOH A 116 616 192 HOH HOH . G 6 HOH A 117 617 195 HOH HOH . G 6 HOH A 118 618 198 HOH HOH . G 6 HOH A 119 619 199 HOH HOH . G 6 HOH A 120 620 201 HOH HOH . G 6 HOH A 121 621 203 HOH HOH . G 6 HOH A 122 622 204 HOH HOH . G 6 HOH A 123 623 211 HOH HOH . G 6 HOH A 124 624 215 HOH HOH . G 6 HOH A 125 625 216 HOH HOH . G 6 HOH A 126 626 221 HOH HOH . G 6 HOH A 127 627 228 HOH HOH . G 6 HOH A 128 628 232 HOH HOH . G 6 HOH A 129 629 235 HOH HOH . G 6 HOH A 130 630 239 HOH HOH . G 6 HOH A 131 631 246 HOH HOH . G 6 HOH A 132 632 247 HOH HOH . G 6 HOH A 133 633 250 HOH HOH . G 6 HOH A 134 634 254 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6P . . . B 2 37.719 -22.35 27.687 1 44.19 ? O1 F6P 401 A 1 HETATM 2 C C1 F6P . . . B 2 37.257 -23.246 26.699 1 43.58 ? C1 F6P 401 A 1 HETATM 3 C C2 F6P . . . B 2 37.656 -24.68 27.043 1 44.05 ? C2 F6P 401 A 1 HETATM 4 O O2 F6P . . . B 2 38.724 -25.142 26.155 1 45.22 ? O2 F6P 401 A 1 HETATM 5 C C3 F6P . . . B 2 36.427 -25.577 26.917 1 42.31 ? C3 F6P 401 A 1 HETATM 6 O O3 F6P . . . B 2 36.34 -26.112 25.609 1 37.18 ? O3 F6P 401 A 1 HETATM 7 C C4 F6P . . . B 2 36.622 -26.613 28.023 1 42.01 ? C4 F6P 401 A 1 HETATM 8 O O4 F6P . . . B 2 35.426 -27.006 28.65 1 41.91 ? O4 F6P 401 A 1 HETATM 9 C C5 F6P . . . B 2 37.458 -25.878 29.052 1 42.82 ? C5 F6P 401 A 1 HETATM 10 O O5 F6P . . . B 2 38.105 -24.8 28.389 1 43.84 ? O5 F6P 401 A 1 HETATM 11 C C6 F6P . . . B 2 38.482 -26.809 29.683 1 42.66 ? C6 F6P 401 A 1 HETATM 12 O O6 F6P . . . B 2 39.117 -26.102 30.719 1 42.49 ? O6 F6P 401 A 1 HETATM 13 P P F6P . . . B 2 39.794 -26.871 31.972 1 42.63 ? P F6P 401 A 1 HETATM 14 O O1P F6P . . . B 2 38.895 -28.008 32.42 1 38.35 ? O1P F6P 401 A 1 HETATM 15 O O2P F6P . . . B 2 41.157 -27.367 31.536 1 41.14 ? O2P F6P 401 A 1 HETATM 16 O O3P F6P . . . B 2 39.954 -25.833 33.064 1 41.92 ? O3P F6P 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #