data_4HEE # _model_server_result.job_id zdmiCFowfBxCG5chkKVbcw _model_server_result.datetime_utc '2025-07-07 06:30:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hee # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4HEE # _exptl.entry_id 4HEE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 513.592 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-benzyl-2-ethyl-3-{(1S)-5-[2-(1H-tetrazol-5-yl)phenyl]-2,3-dihydro-1H-inden-1-yl}-3,5-dihydro-4H-imidazo[4,5-c]pyridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HEE _cell.length_a 54.787 _cell.length_b 72.382 _cell.length_c 143.868 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HEE _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H27 N7 O' _chem_comp.formula_weight 513.592 _chem_comp.id 14R _chem_comp.mon_nstd_flag . _chem_comp.name 5-benzyl-2-ethyl-3-{(1S)-5-[2-(1H-tetrazol-5-yl)phenyl]-2,3-dihydro-1H-inden-1-yl}-3,5-dihydro-4H-imidazo[4,5-c]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 14R doub 1 n y C21 C20 14R sing 2 n y C22 C23 14R sing 3 n y C20 C19 14R doub 4 n y C23 C24 14R sing 5 n n C23 C18 14R doub 6 n y N4 C24 14R sing 7 n y N4 N5 14R sing 8 n y C19 C18 14R sing 9 n y C24 N7 14R doub 10 n y N5 N6 14R doub 11 n y C18 C16 14R sing 12 n n N7 N6 14R sing 13 n y C16 C17 14R doub 14 n y C16 C15 14R sing 15 n y C17 C12 14R sing 16 n y C15 C14 14R doub 17 n y C12 C13 14R doub 18 n y C12 C11 14R sing 19 n n C14 C13 14R sing 20 n y C1 C2 14R sing 21 n n C13 C9 14R sing 22 n n C11 C10 14R sing 23 n n C2 C3 14R sing 24 n n C10 C9 14R sing 25 n n C9 N3 14R sing 26 n n C3 N3 14R sing 27 n y C3 N1 14R doub 28 n y N3 C8 14R sing 29 n y N1 C4 14R sing 30 n y C8 C4 14R doub 31 n y C8 C7 14R sing 32 n n C4 C5 14R sing 33 n n C7 O1 14R doub 34 n n C7 N2 14R sing 35 n n C5 C6 14R doub 36 n n N2 C6 14R sing 37 n n N2 C25 14R sing 38 n n C25 C26 14R sing 39 n n C26 C31 14R doub 40 n y C26 C27 14R sing 41 n y C31 C30 14R sing 42 n y C27 C28 14R doub 43 n y C30 C29 14R doub 44 n y C28 C29 14R sing 45 n y C1 H5 14R sing 46 n n C1 H3 14R sing 47 n n C1 H4 14R sing 48 n n C2 H7 14R sing 49 n n C2 H6 14R sing 50 n n C5 H8 14R sing 51 n n C6 H9 14R sing 52 n n C9 H1 14R sing 53 n n C10 H11 14R sing 54 n n C10 H10 14R sing 55 n n C11 H13 14R sing 56 n n C11 H12 14R sing 57 n n C14 H14 14R sing 58 n n C15 H15 14R sing 59 n n C17 H16 14R sing 60 n n C19 H17 14R sing 61 n n C20 H18 14R sing 62 n n C21 H19 14R sing 63 n n C22 H20 14R sing 64 n n N4 H2 14R sing 65 n n C25 H22 14R sing 66 n n C25 H21 14R sing 67 n n C27 H23 14R sing 68 n n C28 H24 14R sing 69 n n C29 H25 14R sing 70 n n C30 H26 14R sing 71 n n C31 H27 14R sing 72 n n # _atom_sites.entry_id 4HEE _atom_sites.fract_transf_matrix[1][1] 0.018253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013816 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 14R X 1 501 999 14R 14R . D 4 HOH X 1 601 1 HOH HOH . D 4 HOH X 2 602 2 HOH HOH . D 4 HOH X 3 603 3 HOH HOH . D 4 HOH X 4 604 5 HOH HOH . D 4 HOH X 5 605 6 HOH HOH . D 4 HOH X 6 606 8 HOH HOH . D 4 HOH X 7 607 10 HOH HOH . D 4 HOH X 8 608 11 HOH HOH . D 4 HOH X 9 609 12 HOH HOH . D 4 HOH X 10 610 13 HOH HOH . D 4 HOH X 11 611 14 HOH HOH . D 4 HOH X 12 612 15 HOH HOH . D 4 HOH X 13 613 16 HOH HOH . D 4 HOH X 14 614 17 HOH HOH . D 4 HOH X 15 615 19 HOH HOH . D 4 HOH X 16 616 20 HOH HOH . D 4 HOH X 17 617 21 HOH HOH . D 4 HOH X 18 618 22 HOH HOH . D 4 HOH X 19 619 23 HOH HOH . D 4 HOH X 20 620 24 HOH HOH . D 4 HOH X 21 621 25 HOH HOH . D 4 HOH X 22 622 26 HOH HOH . D 4 HOH X 23 623 27 HOH HOH . D 4 HOH X 24 624 28 HOH HOH . D 4 HOH X 25 625 29 HOH HOH . D 4 HOH X 26 626 30 HOH HOH . D 4 HOH X 27 627 32 HOH HOH . D 4 HOH X 28 628 33 HOH HOH . D 4 HOH X 29 629 36 HOH HOH . D 4 HOH X 30 630 37 HOH HOH . D 4 HOH X 31 631 38 HOH HOH . D 4 HOH X 32 632 39 HOH HOH . D 4 HOH X 33 633 40 HOH HOH . D 4 HOH X 34 634 41 HOH HOH . D 4 HOH X 35 635 42 HOH HOH . D 4 HOH X 36 636 45 HOH HOH . D 4 HOH X 37 637 46 HOH HOH . D 4 HOH X 38 638 49 HOH HOH . D 4 HOH X 39 639 50 HOH HOH . D 4 HOH X 40 640 51 HOH HOH . D 4 HOH X 41 641 52 HOH HOH . D 4 HOH X 42 642 53 HOH HOH . D 4 HOH X 43 643 56 HOH HOH . D 4 HOH X 44 644 57 HOH HOH . D 4 HOH X 45 645 58 HOH HOH . D 4 HOH X 46 646 59 HOH HOH . D 4 HOH X 47 647 60 HOH HOH . E 4 HOH Y 1 801 7 HOH HOH . E 4 HOH Y 2 802 31 HOH HOH . E 4 HOH Y 3 803 35 HOH HOH . E 4 HOH Y 4 804 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 14R . . . C 3 -21.282 -13.133 7.938 1 42.55 ? C1 14R 501 X 1 HETATM 2 C C2 14R . . . C 3 -21.83 -14.166 8.843 1 45.75 ? C2 14R 501 X 1 HETATM 3 C C3 14R . . . C 3 -20.839 -14.657 9.843 1 51.03 ? C3 14R 501 X 1 HETATM 4 N N1 14R . . . C 3 -19.992 -13.837 10.442 1 51.69 ? N1 14R 501 X 1 HETATM 5 C C4 14R . . . C 3 -19.223 -14.608 11.296 1 50.05 ? C4 14R 501 X 1 HETATM 6 C C5 14R . . . C 3 -18.143 -14.215 12.15 1 47.33 ? C5 14R 501 X 1 HETATM 7 C C6 14R . . . C 3 -17.522 -15.18 12.852 1 48.85 ? C6 14R 501 X 1 HETATM 8 N N2 14R . . . C 3 -17.914 -16.5 12.81 1 51.02 ? N2 14R 501 X 1 HETATM 9 C C7 14R . . . C 3 -18.972 -16.993 12.029 1 53.05 ? C7 14R 501 X 1 HETATM 10 O O1 14R . . . C 3 -19.311 -18.17 12.113 1 55.32 ? O1 14R 501 X 1 HETATM 11 C C8 14R . . . C 3 -19.606 -15.974 11.24 1 49.96 ? C8 14R 501 X 1 HETATM 12 N N3 14R . . . C 3 -20.645 -16.021 10.279 1 52.12 ? N3 14R 501 X 1 HETATM 13 C C9 14R . . . C 3 -21.221 -17.268 9.726 1 50.93 ? C9 14R 501 X 1 HETATM 14 C C10 14R . . . C 3 -22.747 -17.418 9.628 1 47.7 ? C10 14R 501 X 1 HETATM 15 C C11 14R . . . C 3 -22.934 -18.394 8.464 1 50.38 ? C11 14R 501 X 1 HETATM 16 C C12 14R . . . C 3 -21.76 -18.079 7.575 1 50.78 ? C12 14R 501 X 1 HETATM 17 C C13 14R . . . C 3 -20.781 -17.42 8.293 1 50.08 ? C13 14R 501 X 1 HETATM 18 C C14 14R . . . C 3 -19.61 -17.008 7.667 1 48.5 ? C14 14R 501 X 1 HETATM 19 C C15 14R . . . C 3 -19.435 -17.254 6.316 1 50.17 ? C15 14R 501 X 1 HETATM 20 C C16 14R . . . C 3 -20.417 -17.897 5.559 1 52.48 ? C16 14R 501 X 1 HETATM 21 C C17 14R . . . C 3 -21.577 -18.328 6.216 1 52.03 ? C17 14R 501 X 1 HETATM 22 C C18 14R . . . C 3 -20.268 -18.056 4.083 1 56.08 ? C18 14R 501 X 1 HETATM 23 C C19 14R . . . C 3 -20.565 -19.304 3.523 1 56.89 ? C19 14R 501 X 1 HETATM 24 C C20 14R . . . C 3 -20.571 -19.49 2.149 1 58.9 ? C20 14R 501 X 1 HETATM 25 C C21 14R . . . C 3 -20.269 -18.442 1.305 1 59.18 ? C21 14R 501 X 1 HETATM 26 C C22 14R . . . C 3 -19.939 -17.199 1.827 1 59.13 ? C22 14R 501 X 1 HETATM 27 C C23 14R . . . C 3 -19.924 -16.997 3.21 1 59.48 ? C23 14R 501 X 1 HETATM 28 C C24 14R . . . C 3 -19.5 -15.664 3.673 1 62.31 ? C24 14R 501 X 1 HETATM 29 N N4 14R . . . C 3 -18.309 -15.107 3.42 1 64.18 ? N4 14R 501 X 1 HETATM 30 N N5 14R . . . C 3 -18.268 -13.881 3.984 1 63.53 ? N5 14R 501 X 1 HETATM 31 N N6 14R . . . C 3 -19.406 -13.712 4.565 1 62.85 ? N6 14R 501 X 1 HETATM 32 N N7 14R . . . C 3 -20.201 -14.804 4.397 1 63.42 ? N7 14R 501 X 1 HETATM 33 C C25 14R . . . C 3 -17.194 -17.469 13.646 1 50.35 ? C25 14R 501 X 1 HETATM 34 C C26 14R . . . C 3 -17.26 -17.123 15.112 1 49.67 ? C26 14R 501 X 1 HETATM 35 C C27 14R . . . C 3 -16.102 -16.998 15.862 1 45.67 ? C27 14R 501 X 1 HETATM 36 C C28 14R . . . C 3 -16.159 -16.628 17.194 1 45.22 ? C28 14R 501 X 1 HETATM 37 C C29 14R . . . C 3 -17.372 -16.371 17.789 1 46.99 ? C29 14R 501 X 1 HETATM 38 C C30 14R . . . C 3 -18.533 -16.498 17.061 1 47.05 ? C30 14R 501 X 1 HETATM 39 C C31 14R . . . C 3 -18.479 -16.873 15.728 1 49.4 ? C31 14R 501 X 1 HETATM 40 H H5 14R . . . C 3 -22.004 -12.829 7.181 0 42.96 ? H5 14R 501 X 1 HETATM 41 H H3 14R . . . C 3 -20.406 -13.496 7.404 0 42.59 ? H3 14R 501 X 1 HETATM 42 H H4 14R . . . C 3 -20.983 -12.224 8.458 0 42.04 ? H4 14R 501 X 1 HETATM 43 H H7 14R . . . C 3 -22.23 -14.974 8.233 0 46.36 ? H7 14R 501 X 1 HETATM 44 H H6 14R . . . C 3 -22.685 -13.771 9.39 0 45.86 ? H6 14R 501 X 1 HETATM 45 H H8 14R . . . C 3 -17.855 -13.167 12.217 0 46.71 ? H8 14R 501 X 1 HETATM 46 H H9 14R . . . C 3 -16.645 -14.943 13.451 0 48.5 ? H9 14R 501 X 1 HETATM 47 H H1 14R . . . C 3 -20.85 -18.118 10.292 0 51.6 ? H1 14R 501 X 1 HETATM 48 H H11 14R . . . C 3 -23.288 -16.491 9.454 0 47.24 ? H11 14R 501 X 1 HETATM 49 H H10 14R . . . C 3 -23.164 -17.809 10.554 0 48.29 ? H10 14R 501 X 1 HETATM 50 H H13 14R . . . C 3 -23.89 -18.279 7.956 0 50.74 ? H13 14R 501 X 1 HETATM 51 H H12 14R . . . C 3 -22.899 -19.437 8.772 0 51.39 ? H12 14R 501 X 1 HETATM 52 H H14 14R . . . C 3 -18.842 -16.485 8.234 0 47.75 ? H14 14R 501 X 1 HETATM 53 H H15 14R . . . C 3 -18.513 -16.929 5.836 0 50.11 ? H15 14R 501 X 1 HETATM 54 H H16 14R . . . C 3 -22.353 -18.858 5.666 0 52.93 ? H16 14R 501 X 1 HETATM 55 H H17 14R . . . C 3 -20.789 -20.146 4.176 0 57.3 ? H17 14R 501 X 1 HETATM 56 H H18 14R . . . C 3 -20.813 -20.466 1.731 0 60.15 ? H18 14R 501 X 1 HETATM 57 H H19 14R . . . C 3 -20.286 -18.579 0.225 0 60.22 ? H19 14R 501 X 1 HETATM 58 H H20 14R . . . C 3 -19.694 -16.389 1.141 0 59.29 ? H20 14R 501 X 1 HETATM 59 H H2 14R . . . C 3 -17.516 -15.474 2.905 0 65.09 ? H2 14R 501 X 1 HETATM 60 H H22 14R . . . C 3 -16.153 -17.493 13.327 0 50.25 ? H22 14R 501 X 1 HETATM 61 H H21 14R . . . C 3 -17.499 -18.505 13.504 0 51.47 ? H21 14R 501 X 1 HETATM 62 H H23 14R . . . C 3 -15.132 -17.196 15.408 0 45.68 ? H23 14R 501 X 1 HETATM 63 H H24 14R . . . C 3 -15.245 -16.575 17.78 0 45.21 ? H24 14R 501 X 1 HETATM 64 H H25 14R . . . C 3 -17.397 -16.049 18.829 0 47.21 ? H25 14R 501 X 1 HETATM 65 H H26 14R . . . C 3 -19.501 -16.308 17.524 0 47.55 ? H26 14R 501 X 1 HETATM 66 H H27 14R . . . C 3 -19.401 -16.988 15.161 0 49.7 ? H27 14R 501 X 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 66 #