data_4HEJ # _model_server_result.job_id Pa5VfB0--bGJk7pYePtPAw _model_server_result.datetime_utc '2025-03-23 17:26:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4HEJ # _exptl.entry_id 4HEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 459.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methyl-1-[(3S)-1-{3-[3-(trifluoromethyl)phenoxy]benzyl}piperidin-3-yl]pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.69 _cell.angle_gamma 90 _cell.entry_id 4HEJ _cell.length_a 45.348 _cell.length_b 90.308 _cell.length_c 50.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H24 F3 N3 O3' _chem_comp.formula_weight 459.461 _chem_comp.id 14D _chem_comp.mon_nstd_flag . _chem_comp.name 5-methyl-1-[(3S)-1-{3-[3-(trifluoromethyl)phenoxy]benzyl}piperidin-3-yl]pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C5 14D doub 1 n n N2 C5 14D sing 2 n n N2 C4 14D sing 3 n n C5 C2 14D sing 4 n n F1 C24 14D sing 5 n n O1 C4 14D doub 6 n n C4 N1 14D sing 7 n n C2 C1 14D sing 8 n n C2 C3 14D doub 9 n n F3 C24 14D sing 10 n n C24 F2 14D sing 11 n n C24 C22 14D sing 12 n n N1 C3 14D sing 13 n n N1 C6 14D sing 14 n n C22 C21 14D doub 15 n y C22 C23 14D sing 16 n y C21 C20 14D sing 17 n y C6 C10 14D sing 18 n n C6 C7 14D sing 19 n n C23 C18 14D doub 20 n y C20 C19 14D doub 21 n y C10 N3 14D sing 22 n n C7 C8 14D sing 23 n n C18 C19 14D sing 24 n y C18 O3 14D sing 25 n n N3 C11 14D sing 26 n n N3 C9 14D sing 27 n n O3 C16 14D sing 28 n n C8 C9 14D sing 29 n n C17 C16 14D doub 30 n y C17 C12 14D sing 31 n y C11 C12 14D sing 32 n n C16 C15 14D sing 33 n y C12 C13 14D doub 34 n y C15 C14 14D doub 35 n y C13 C14 14D sing 36 n y C1 H1 14D sing 37 n n C1 H2 14D sing 38 n n C1 H3 14D sing 39 n n C3 H4 14D sing 40 n n N2 H5 14D sing 41 n n C6 H6 14D sing 42 n n C7 H7 14D sing 43 n n C7 H8 14D sing 44 n n C8 H9 14D sing 45 n n C8 H10 14D sing 46 n n C9 H11 14D sing 47 n n C9 H12 14D sing 48 n n C10 H14 14D sing 49 n n C10 H15 14D sing 50 n n C11 H16 14D sing 51 n n C11 H17 14D sing 52 n n C13 H18 14D sing 53 n n C14 H19 14D sing 54 n n C15 H20 14D sing 55 n n C17 H21 14D sing 56 n n C19 H22 14D sing 57 n n C20 H23 14D sing 58 n n C21 H24 14D sing 59 n n C23 H25 14D sing 60 n n # _atom_sites.entry_id 4HEJ _atom_sites.fract_transf_matrix[1][1] 0.022052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004163 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 14D A 1 301 1 14D T16 . D 3 HOH A 1 401 1 HOH HOH . D 3 HOH A 2 402 3 HOH HOH . D 3 HOH A 3 403 5 HOH HOH . D 3 HOH A 4 404 6 HOH HOH . D 3 HOH A 5 405 7 HOH HOH . D 3 HOH A 6 406 9 HOH HOH . D 3 HOH A 7 407 10 HOH HOH . D 3 HOH A 8 408 11 HOH HOH . D 3 HOH A 9 409 12 HOH HOH . D 3 HOH A 10 410 13 HOH HOH . D 3 HOH A 11 411 15 HOH HOH . D 3 HOH A 12 412 16 HOH HOH . D 3 HOH A 13 413 17 HOH HOH . D 3 HOH A 14 414 18 HOH HOH . D 3 HOH A 15 415 22 HOH HOH . D 3 HOH A 16 416 24 HOH HOH . D 3 HOH A 17 417 25 HOH HOH . D 3 HOH A 18 418 27 HOH HOH . D 3 HOH A 19 419 31 HOH HOH . D 3 HOH A 20 420 32 HOH HOH . D 3 HOH A 21 421 33 HOH HOH . D 3 HOH A 22 422 38 HOH HOH . D 3 HOH A 23 423 39 HOH HOH . D 3 HOH A 24 424 41 HOH HOH . D 3 HOH A 25 425 42 HOH HOH . D 3 HOH A 26 426 43 HOH HOH . D 3 HOH A 27 427 46 HOH HOH . D 3 HOH A 28 428 48 HOH HOH . D 3 HOH A 29 429 49 HOH HOH . D 3 HOH A 30 430 52 HOH HOH . D 3 HOH A 31 431 53 HOH HOH . D 3 HOH A 32 432 55 HOH HOH . D 3 HOH A 33 433 56 HOH HOH . D 3 HOH A 34 434 57 HOH HOH . D 3 HOH A 35 435 58 HOH HOH . D 3 HOH A 36 436 59 HOH HOH . D 3 HOH A 37 437 63 HOH HOH . D 3 HOH A 38 438 64 HOH HOH . D 3 HOH A 39 439 65 HOH HOH . D 3 HOH A 40 440 68 HOH HOH . D 3 HOH A 41 441 70 HOH HOH . D 3 HOH A 42 442 76 HOH HOH . D 3 HOH A 43 443 77 HOH HOH . D 3 HOH A 44 444 78 HOH HOH . D 3 HOH A 45 445 84 HOH HOH . D 3 HOH A 46 446 85 HOH HOH . D 3 HOH A 47 447 86 HOH HOH . D 3 HOH A 48 448 88 HOH HOH . D 3 HOH A 49 449 91 HOH HOH . D 3 HOH A 50 450 95 HOH HOH . D 3 HOH A 51 451 96 HOH HOH . D 3 HOH A 52 452 97 HOH HOH . D 3 HOH A 53 453 98 HOH HOH . D 3 HOH A 54 454 99 HOH HOH . D 3 HOH A 55 455 100 HOH HOH . D 3 HOH A 56 456 101 HOH HOH . D 3 HOH A 57 457 105 HOH HOH . D 3 HOH A 58 458 106 HOH HOH . D 3 HOH A 59 459 107 HOH HOH . D 3 HOH A 60 460 110 HOH HOH . D 3 HOH A 61 461 115 HOH HOH . D 3 HOH A 62 462 117 HOH HOH . D 3 HOH A 63 463 119 HOH HOH . D 3 HOH A 64 464 120 HOH HOH . D 3 HOH A 65 465 122 HOH HOH . D 3 HOH A 66 466 123 HOH HOH . D 3 HOH A 67 467 125 HOH HOH . D 3 HOH A 68 468 127 HOH HOH . D 3 HOH A 69 469 130 HOH HOH . D 3 HOH A 70 470 131 HOH HOH . D 3 HOH A 71 471 135 HOH HOH . D 3 HOH A 72 472 138 HOH HOH . D 3 HOH A 73 473 139 HOH HOH . D 3 HOH A 74 474 141 HOH HOH . D 3 HOH A 75 475 144 HOH HOH . D 3 HOH A 76 476 145 HOH HOH . D 3 HOH A 77 477 147 HOH HOH . D 3 HOH A 78 478 148 HOH HOH . D 3 HOH A 79 479 149 HOH HOH . D 3 HOH A 80 480 150 HOH HOH . D 3 HOH A 81 481 153 HOH HOH . D 3 HOH A 82 482 158 HOH HOH . D 3 HOH A 83 483 159 HOH HOH . D 3 HOH A 84 484 162 HOH HOH . D 3 HOH A 85 485 163 HOH HOH . D 3 HOH A 86 486 166 HOH HOH . D 3 HOH A 87 487 168 HOH HOH . D 3 HOH A 88 488 170 HOH HOH . D 3 HOH A 89 489 171 HOH HOH . D 3 HOH A 90 490 172 HOH HOH . D 3 HOH A 91 491 175 HOH HOH . D 3 HOH A 92 492 179 HOH HOH . D 3 HOH A 93 493 181 HOH HOH . D 3 HOH A 94 494 183 HOH HOH . D 3 HOH A 95 495 184 HOH HOH . D 3 HOH A 96 496 185 HOH HOH . D 3 HOH A 97 497 186 HOH HOH . D 3 HOH A 98 498 187 HOH HOH . D 3 HOH A 99 499 188 HOH HOH . D 3 HOH A 100 500 189 HOH HOH . E 3 HOH B 1 301 2 HOH HOH . E 3 HOH B 2 302 4 HOH HOH . E 3 HOH B 3 303 8 HOH HOH . E 3 HOH B 4 304 14 HOH HOH . E 3 HOH B 5 305 19 HOH HOH . E 3 HOH B 6 306 20 HOH HOH . E 3 HOH B 7 307 21 HOH HOH . E 3 HOH B 8 308 23 HOH HOH . E 3 HOH B 9 309 26 HOH HOH . E 3 HOH B 10 310 28 HOH HOH . E 3 HOH B 11 311 29 HOH HOH . E 3 HOH B 12 312 30 HOH HOH . E 3 HOH B 13 313 34 HOH HOH . E 3 HOH B 14 314 35 HOH HOH . E 3 HOH B 15 315 36 HOH HOH . E 3 HOH B 16 316 37 HOH HOH . E 3 HOH B 17 317 40 HOH HOH . E 3 HOH B 18 318 44 HOH HOH . E 3 HOH B 19 319 45 HOH HOH . E 3 HOH B 20 320 47 HOH HOH . E 3 HOH B 21 321 50 HOH HOH . E 3 HOH B 22 322 51 HOH HOH . E 3 HOH B 23 323 54 HOH HOH . E 3 HOH B 24 324 60 HOH HOH . E 3 HOH B 25 325 61 HOH HOH . E 3 HOH B 26 326 62 HOH HOH . E 3 HOH B 27 327 66 HOH HOH . E 3 HOH B 28 328 67 HOH HOH . E 3 HOH B 29 329 69 HOH HOH . E 3 HOH B 30 330 71 HOH HOH . E 3 HOH B 31 331 72 HOH HOH . E 3 HOH B 32 332 73 HOH HOH . E 3 HOH B 33 333 74 HOH HOH . E 3 HOH B 34 334 75 HOH HOH . E 3 HOH B 35 335 79 HOH HOH . E 3 HOH B 36 336 80 HOH HOH . E 3 HOH B 37 337 81 HOH HOH . E 3 HOH B 38 338 82 HOH HOH . E 3 HOH B 39 339 83 HOH HOH . E 3 HOH B 40 340 87 HOH HOH . E 3 HOH B 41 341 89 HOH HOH . E 3 HOH B 42 342 90 HOH HOH . E 3 HOH B 43 343 92 HOH HOH . E 3 HOH B 44 344 93 HOH HOH . E 3 HOH B 45 345 94 HOH HOH . E 3 HOH B 46 346 102 HOH HOH . E 3 HOH B 47 347 103 HOH HOH . E 3 HOH B 48 348 104 HOH HOH . E 3 HOH B 49 349 108 HOH HOH . E 3 HOH B 50 350 109 HOH HOH . E 3 HOH B 51 351 111 HOH HOH . E 3 HOH B 52 352 112 HOH HOH . E 3 HOH B 53 353 113 HOH HOH . E 3 HOH B 54 354 114 HOH HOH . E 3 HOH B 55 355 116 HOH HOH . E 3 HOH B 56 356 118 HOH HOH . E 3 HOH B 57 357 121 HOH HOH . E 3 HOH B 58 358 124 HOH HOH . E 3 HOH B 59 359 126 HOH HOH . E 3 HOH B 60 360 128 HOH HOH . E 3 HOH B 61 361 129 HOH HOH . E 3 HOH B 62 362 132 HOH HOH . E 3 HOH B 63 363 133 HOH HOH . E 3 HOH B 64 364 134 HOH HOH . E 3 HOH B 65 365 136 HOH HOH . E 3 HOH B 66 366 137 HOH HOH . E 3 HOH B 67 367 140 HOH HOH . E 3 HOH B 68 368 142 HOH HOH . E 3 HOH B 69 369 143 HOH HOH . E 3 HOH B 70 370 146 HOH HOH . E 3 HOH B 71 371 151 HOH HOH . E 3 HOH B 72 372 152 HOH HOH . E 3 HOH B 73 373 154 HOH HOH . E 3 HOH B 74 374 155 HOH HOH . E 3 HOH B 75 375 156 HOH HOH . E 3 HOH B 76 376 157 HOH HOH . E 3 HOH B 77 377 160 HOH HOH . E 3 HOH B 78 378 161 HOH HOH . E 3 HOH B 79 379 164 HOH HOH . E 3 HOH B 80 380 165 HOH HOH . E 3 HOH B 81 381 167 HOH HOH . E 3 HOH B 82 382 169 HOH HOH . E 3 HOH B 83 383 173 HOH HOH . E 3 HOH B 84 384 174 HOH HOH . E 3 HOH B 85 385 176 HOH HOH . E 3 HOH B 86 386 177 HOH HOH . E 3 HOH B 87 387 178 HOH HOH . E 3 HOH B 88 388 180 HOH HOH . E 3 HOH B 89 389 182 HOH HOH . E 3 HOH B 90 390 190 HOH HOH . E 3 HOH B 91 391 191 HOH HOH . E 3 HOH B 92 392 192 HOH HOH . E 3 HOH B 93 393 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 14D . . . C 2 12.021 -3.621 1.073 1 15.16 ? C1 14D 301 A 1 HETATM 2 C C2 14D . . . C 2 11.489 -2.239 0.926 1 18.11 ? C2 14D 301 A 1 HETATM 3 C C3 14D . . . C 2 11.049 -1.535 1.967 1 18.49 ? C3 14D 301 A 1 HETATM 4 N N1 14D . . . C 2 10.553 -0.26 1.827 1 21.13 ? N1 14D 301 A 1 HETATM 5 C C4 14D . . . C 2 10.526 0.378 0.595 1 18.82 ? C4 14D 301 A 1 HETATM 6 O O1 14D . . . C 2 10.183 1.553 0.49 1 16.42 ? O1 14D 301 A 1 HETATM 7 N N2 14D . . . C 2 10.902 -0.332 -0.483 1 17.57 ? N2 14D 301 A 1 HETATM 8 C C5 14D . . . C 2 11.409 -1.583 -0.414 1 20.11 ? C5 14D 301 A 1 HETATM 9 O O2 14D . . . C 2 11.802 -2.186 -1.412 1 21.87 ? O2 14D 301 A 1 HETATM 10 C C6 14D . . . C 2 10.068 0.453 3.005 1 22.3 ? C6 14D 301 A 1 HETATM 11 C C7 14D . . . C 2 9.167 -0.39 3.917 1 21.89 ? C7 14D 301 A 1 HETATM 12 C C8 14D . . . C 2 8.664 0.413 5.1 1 21.83 ? C8 14D 301 A 1 HETATM 13 C C9 14D . . . C 2 9.836 0.959 5.893 1 23.58 ? C9 14D 301 A 1 HETATM 14 N N3 14D . . . C 2 10.645 1.831 4.98 1 26.03 ? N3 14D 301 A 1 HETATM 15 C C10 14D . . . C 2 11.183 1.165 3.749 1 21.87 ? C10 14D 301 A 1 HETATM 16 C C11 14D . . . C 2 11.626 2.731 5.673 1 28.11 ? C11 14D 301 A 1 HETATM 17 C C12 14D . . . C 2 12.847 2.037 6.196 1 31.39 ? C12 14D 301 A 1 HETATM 18 C C13 14D . . . C 2 12.881 1.586 7.505 1 32.55 ? C13 14D 301 A 1 HETATM 19 C C14 14D . . . C 2 13.988 0.926 7.993 1 34.31 ? C14 14D 301 A 1 HETATM 20 C C15 14D . . . C 2 15.085 0.729 7.174 1 33.89 ? C15 14D 301 A 1 HETATM 21 C C16 14D . . . C 2 15.044 1.166 5.864 1 33.55 ? C16 14D 301 A 1 HETATM 22 C C17 14D . . . C 2 13.939 1.83 5.373 1 31.05 ? C17 14D 301 A 1 HETATM 23 O O3 14D . . . C 2 16.152 0.985 5.049 1 34.15 ? O3 14D 301 A 1 HETATM 24 C C18 14D . . . C 2 16.206 -0.123 4.22 1 31.87 ? C18 14D 301 A 1 HETATM 25 C C19 14D . . . C 2 15.383 -1.235 4.305 1 32.66 ? C19 14D 301 A 1 HETATM 26 C C20 14D . . . C 2 15.557 -2.288 3.422 1 31.16 ? C20 14D 301 A 1 HETATM 27 C C21 14D . . . C 2 16.547 -2.231 2.461 1 29.17 ? C21 14D 301 A 1 HETATM 28 C C22 14D . . . C 2 17.353 -1.105 2.378 1 30.45 ? C22 14D 301 A 1 HETATM 29 C C23 14D . . . C 2 17.186 -0.058 3.258 1 30.06 ? C23 14D 301 A 1 HETATM 30 C C24 14D . . . C 2 18.427 -1.013 1.358 1 30.09 ? C24 14D 301 A 1 HETATM 31 F F1 14D . . . C 2 17.999 -1.329 0.116 1 30.19 ? F1 14D 301 A 1 HETATM 32 F F2 14D . . . C 2 19.443 -1.851 1.66 1 28.34 ? F2 14D 301 A 1 HETATM 33 F F3 14D . . . C 2 18.986 0.218 1.209 1 31.1 ? F3 14D 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #