data_4HFB # _model_server_result.job_id 6N_6-a4DatkRT3d9x4GimQ _model_server_result.datetime_utc '2024-11-23 19:16:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hfb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":405}' # _entry.id 4HFB # _exptl.entry_id 4HFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.28 _cell.angle_gamma 90 _cell.entry_id 4HFB _cell.length_a 183.737 _cell.length_b 133.512 _cell.length_c 161.12 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 O N N ? 5 T N N ? 5 Y N N ? 5 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 I NA NA . A NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 N NA NA . B NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc3 C O PRO 68 C PRO 68 1_555 S NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.028 ? metalc ? metalc4 C O ILE 71 C ILE 71 1_555 S NA NA . C NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc5 D O ILE 71 D ILE 71 1_555 X NA NA . D NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc6 E O PRO 68 E PRO 68 1_555 CA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.054 ? metalc ? metalc7 E O ILE 71 E ILE 71 1_555 CA NA NA . E NA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 266 n n C1 O3P PLC sing 267 n n C1 H11 PLC sing 268 n n C1 H12 PLC sing 269 n n C2 C3 PLC sing 270 n n C2 O2 PLC sing 271 n n C2 H2 PLC sing 272 n n C3 O3 PLC sing 273 n n C3 H31 PLC sing 274 n n C3 H32 PLC sing 275 n n C4 C5 PLC sing 276 n n C4 O4P PLC sing 277 n n C4 H41 PLC sing 278 n n C4 H42 PLC sing 279 n n C5 N PLC sing 280 n n C5 H51 PLC sing 281 n n C5 H52 PLC sing 282 n n C6 N PLC sing 283 n n C6 H61 PLC sing 284 n n C6 H62 PLC sing 285 n n C6 H63 PLC sing 286 n n C7 N PLC sing 287 n n C7 H71 PLC sing 288 n n C7 H72 PLC sing 289 n n C7 H73 PLC sing 290 n n C8 N PLC sing 291 n n C8 H81 PLC sing 292 n n C8 H82 PLC sing 293 n n C8 H83 PLC sing 294 n n C' C1' PLC sing 295 n n C' O' PLC doub 296 n n C' O2 PLC sing 297 n n C1' C2' PLC sing 298 n n C1' "H1'1" PLC sing 299 n n C1' "H1'2" PLC sing 300 n n C2' C3' PLC sing 301 n n C2' "H2'1" PLC sing 302 n n C2' "H2'2" PLC sing 303 n n C3' C4' PLC sing 304 n n C3' "H3'1" PLC sing 305 n n C3' "H3'2" PLC sing 306 n n C4' C5' PLC sing 307 n n C4' "H4'1" PLC sing 308 n n C4' "H4'2" PLC sing 309 n n C5' C6' PLC sing 310 n n C5' "H5'1" PLC sing 311 n n C5' "H5'2" PLC sing 312 n n C6' C7' PLC sing 313 n n C6' "H6'1" PLC sing 314 n n C6' "H6'2" PLC sing 315 n n C7' C8' PLC sing 316 n n C7' "H7'1" PLC sing 317 n n C7' "H7'2" PLC sing 318 n n C8' C9' PLC sing 319 n n C8' "H8'1" PLC sing 320 n n C8' "H8'2" PLC sing 321 n n C9' CA' PLC sing 322 n n C9' "H9'1" PLC sing 323 n n C9' "H9'2" PLC sing 324 n n CA' CB' PLC sing 325 n n CA' "HT'1" PLC sing 326 n n CA' "HT'2" PLC sing 327 n n CB' "HE'1" PLC sing 328 n n CB' "HE'2" PLC sing 329 n n CB' "HE'3" PLC sing 330 n n CB C1B PLC sing 331 n n CB OB PLC doub 332 n n CB O3 PLC sing 333 n n C1B C2B PLC sing 334 n n C1B H1A1 PLC sing 335 n n C1B H1A2 PLC sing 336 n n C2B C3B PLC sing 337 n n C2B H2A1 PLC sing 338 n n C2B H2A2 PLC sing 339 n n C3B C4B PLC sing 340 n n C3B H3A1 PLC sing 341 n n C3B H3A2 PLC sing 342 n n C4B C5B PLC sing 343 n n C4B H4A1 PLC sing 344 n n C4B H4A2 PLC sing 345 n n C5B C6B PLC sing 346 n n C5B H5A1 PLC sing 347 n n C5B H5A2 PLC sing 348 n n C6B C7B PLC sing 349 n n C6B H6A1 PLC sing 350 n n C6B H6A2 PLC sing 351 n n C7B C8B PLC sing 352 n n C7B H7A1 PLC sing 353 n n C7B H7A2 PLC sing 354 n n C8B C9B PLC sing 355 n n C8B H8A1 PLC sing 356 n n C8B H8A2 PLC sing 357 n n C9B CAA PLC sing 358 n n C9B H9A1 PLC sing 359 n n C9B H9A2 PLC sing 360 n n CAA CBA PLC sing 361 n n CAA HTA1 PLC sing 362 n n CAA HTA2 PLC sing 363 n n CBA HEA1 PLC sing 364 n n CBA HEA2 PLC sing 365 n n CBA HEA3 PLC sing 366 n n O1P P PLC doub 367 n n O2P P PLC sing 368 n n O2P HOP2 PLC sing 369 n n O3P P PLC sing 370 n n O4P P PLC sing 371 n n # _atom_sites.entry_id 4HFB _atom_sites.fract_transf_matrix[1][1] 0.005443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001285 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 1 ACT ACT . G 3 CL A 1 402 4 CL CL . H 2 ACT A 1 403 2 ACT ACT . I 4 NA A 1 404 1 NA NA . J 5 PLC A 1 405 1 PLC PLC . K 2 ACT B 1 401 4 ACT ACT . L 3 CL B 1 402 5 CL CL . M 2 ACT B 1 403 3 ACT ACT . N 4 NA B 1 404 2 NA NA . O 5 PLC B 1 405 2 PLC PLC . P 2 ACT C 1 401 5 ACT ACT . Q 3 CL C 1 402 1 CL CL . R 2 ACT C 1 403 1 ACT ACT . S 4 NA C 1 404 4 NA NA . T 5 PLC C 1 405 3 PLC PLC . U 2 ACT D 1 401 2 ACT ACT . V 3 CL D 1 402 2 CL CL . W 2 ACT D 1 403 4 ACT ACT . X 4 NA D 1 404 5 NA NA . Y 5 PLC D 1 405 4 PLC PLC . Z 2 ACT E 1 401 3 ACT ACT . AA 3 CL E 1 402 3 CL CL . BA 2 ACT E 1 403 5 ACT ACT . CA 4 NA E 1 404 3 NA NA . DA 4 NA E 1 405 6 NA NA . EA 5 PLC E 1 406 5 PLC PLC . FA 6 HOH A 1 501 1 HOH HOH . FA 6 HOH A 2 502 4 HOH HOH . FA 6 HOH A 3 503 18 HOH HOH . FA 6 HOH A 4 504 23 HOH HOH . FA 6 HOH A 5 505 36 HOH HOH . FA 6 HOH A 6 506 41 HOH HOH . FA 6 HOH A 7 507 63 HOH HOH . FA 6 HOH A 8 508 66 HOH HOH . FA 6 HOH A 9 509 77 HOH HOH . FA 6 HOH A 10 510 78 HOH HOH . FA 6 HOH A 11 511 79 HOH HOH . FA 6 HOH A 12 512 82 HOH HOH . FA 6 HOH A 13 513 85 HOH HOH . FA 6 HOH A 14 514 92 HOH HOH . FA 6 HOH A 15 515 93 HOH HOH . GA 6 HOH B 1 501 2 HOH HOH . GA 6 HOH B 2 502 9 HOH HOH . GA 6 HOH B 3 503 11 HOH HOH . GA 6 HOH B 4 504 17 HOH HOH . GA 6 HOH B 5 505 22 HOH HOH . GA 6 HOH B 6 506 29 HOH HOH . GA 6 HOH B 7 507 31 HOH HOH . GA 6 HOH B 8 508 34 HOH HOH . GA 6 HOH B 9 509 38 HOH HOH . GA 6 HOH B 10 510 45 HOH HOH . GA 6 HOH B 11 511 65 HOH HOH . GA 6 HOH B 12 512 68 HOH HOH . GA 6 HOH B 13 513 71 HOH HOH . GA 6 HOH B 14 514 73 HOH HOH . GA 6 HOH B 15 515 86 HOH HOH . GA 6 HOH B 16 516 87 HOH HOH . GA 6 HOH B 17 517 88 HOH HOH . HA 6 HOH C 1 501 5 HOH HOH . HA 6 HOH C 2 502 6 HOH HOH . HA 6 HOH C 3 503 14 HOH HOH . HA 6 HOH C 4 504 15 HOH HOH . HA 6 HOH C 5 505 16 HOH HOH . HA 6 HOH C 6 506 26 HOH HOH . HA 6 HOH C 7 507 27 HOH HOH . HA 6 HOH C 8 508 28 HOH HOH . HA 6 HOH C 9 509 37 HOH HOH . HA 6 HOH C 10 510 39 HOH HOH . HA 6 HOH C 11 511 44 HOH HOH . HA 6 HOH C 12 512 48 HOH HOH . HA 6 HOH C 13 513 50 HOH HOH . HA 6 HOH C 14 514 64 HOH HOH . HA 6 HOH C 15 515 69 HOH HOH . HA 6 HOH C 16 516 70 HOH HOH . HA 6 HOH C 17 517 72 HOH HOH . HA 6 HOH C 18 518 74 HOH HOH . HA 6 HOH C 19 519 84 HOH HOH . HA 6 HOH C 20 520 89 HOH HOH . HA 6 HOH C 21 521 94 HOH HOH . HA 6 HOH C 22 522 95 HOH HOH . IA 6 HOH D 1 501 3 HOH HOH . IA 6 HOH D 2 502 12 HOH HOH . IA 6 HOH D 3 503 13 HOH HOH . IA 6 HOH D 4 504 21 HOH HOH . IA 6 HOH D 5 505 24 HOH HOH . IA 6 HOH D 6 506 25 HOH HOH . IA 6 HOH D 7 507 33 HOH HOH . IA 6 HOH D 8 508 42 HOH HOH . IA 6 HOH D 9 509 47 HOH HOH . IA 6 HOH D 10 510 59 HOH HOH . IA 6 HOH D 11 511 61 HOH HOH . IA 6 HOH D 12 512 62 HOH HOH . IA 6 HOH D 13 513 83 HOH HOH . IA 6 HOH D 14 514 90 HOH HOH . IA 6 HOH D 15 515 96 HOH HOH . JA 6 HOH E 1 501 7 HOH HOH . JA 6 HOH E 2 502 8 HOH HOH . JA 6 HOH E 3 503 10 HOH HOH . JA 6 HOH E 4 504 19 HOH HOH . JA 6 HOH E 5 505 20 HOH HOH . JA 6 HOH E 6 506 30 HOH HOH . JA 6 HOH E 7 507 32 HOH HOH . JA 6 HOH E 8 508 35 HOH HOH . JA 6 HOH E 9 509 40 HOH HOH . JA 6 HOH E 10 510 43 HOH HOH . JA 6 HOH E 11 511 46 HOH HOH . JA 6 HOH E 12 512 49 HOH HOH . JA 6 HOH E 13 513 51 HOH HOH . JA 6 HOH E 14 514 52 HOH HOH . JA 6 HOH E 15 515 53 HOH HOH . JA 6 HOH E 16 516 54 HOH HOH . JA 6 HOH E 17 517 55 HOH HOH . JA 6 HOH E 18 518 56 HOH HOH . JA 6 HOH E 19 519 57 HOH HOH . JA 6 HOH E 20 520 58 HOH HOH . JA 6 HOH E 21 521 60 HOH HOH . JA 6 HOH E 22 522 67 HOH HOH . JA 6 HOH E 23 523 75 HOH HOH . JA 6 HOH E 24 524 76 HOH HOH . JA 6 HOH E 25 525 80 HOH HOH . JA 6 HOH E 26 526 81 HOH HOH . JA 6 HOH E 27 527 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLC . . . Y 5 79.179 -38.23 23.74 1 168.67 ? C1 PLC 405 D 1 HETATM 2 C C2 PLC . . . Y 5 78.472 -37.902 25.097 1 162.92 ? C2 PLC 405 D 1 HETATM 3 C C3 PLC . . . Y 5 79.059 -38.723 26.303 1 160.15 ? C3 PLC 405 D 1 HETATM 4 C C4 PLC . . . Y 5 78.395 -42.04 20.578 1 178.47 ? C4 PLC 405 D 1 HETATM 5 C C5 PLC . . . Y 5 79.252 -43.043 21.43 1 177.18 ? C5 PLC 405 D 1 HETATM 6 C C6 PLC . . . Y 5 81.202 -44.385 20.704 1 175.71 ? C6 PLC 405 D 1 HETATM 7 C C7 PLC . . . Y 5 79.239 -45.588 21.601 1 175.15 ? C7 PLC 405 D 1 HETATM 8 C C8 PLC . . . Y 5 79.13 -44.618 19.333 1 175.71 ? C8 PLC 405 D 1 HETATM 9 C C' PLC . . . Y 5 79.64 -35.641 25.593 1 154.21 ? C' PLC 405 D 1 HETATM 10 C C1' PLC . . . Y 5 80.155 -35.369 27.004 1 148.2 ? C1' PLC 405 D 1 HETATM 11 C C2' PLC . . . Y 5 80.215 -33.865 27.332 1 142.3 ? C2' PLC 405 D 1 HETATM 12 C C3' PLC . . . Y 5 79.372 -33.543 28.575 1 136.67 ? C3' PLC 405 D 1 HETATM 13 C C4' PLC . . . Y 5 80.192 -33.25 29.827 1 131.99 ? C4' PLC 405 D 1 HETATM 14 C C5' PLC . . . Y 5 79.284 -33.059 31.042 1 129.64 ? C5' PLC 405 D 1 HETATM 15 C C6' PLC . . . Y 5 80.092 -32.615 32.271 1 127.88 ? C6' PLC 405 D 1 HETATM 16 C C7' PLC . . . Y 5 79.235 -32.568 33.546 1 126.17 ? C7' PLC 405 D 1 HETATM 17 C CB PLC . . . Y 5 78.916 -38.603 28.749 1 155.55 ? CB PLC 405 D 1 HETATM 18 C C1B PLC . . . Y 5 78.105 -38.039 29.902 1 152.47 ? C1B PLC 405 D 1 HETATM 19 C C2B PLC . . . Y 5 78.852 -36.866 30.586 1 149.94 ? C2B PLC 405 D 1 HETATM 20 C C3B PLC . . . Y 5 78.793 -36.929 32.13 1 147.97 ? C3B PLC 405 D 1 HETATM 21 C C4B PLC . . . Y 5 77.456 -36.49 32.776 1 146.93 ? C4B PLC 405 D 1 HETATM 22 C C5B PLC . . . Y 5 77.616 -36.069 34.253 1 146.44 ? C5B PLC 405 D 1 HETATM 23 C C6B PLC . . . Y 5 77.223 -37.19 35.239 1 145.77 ? C6B PLC 405 D 1 HETATM 24 C C7B PLC . . . Y 5 76.61 -36.638 36.532 1 144.74 ? C7B PLC 405 D 1 HETATM 25 O O' PLC . . . Y 5 80.101 -35.176 24.553 1 154.03 ? O' PLC 405 D 1 HETATM 26 O OB PLC . . . Y 5 79.91 -39.309 28.866 1 156.12 ? OB PLC 405 D 1 HETATM 27 O O2 PLC . . . Y 5 78.501 -36.467 25.381 1 159.53 ? O2 PLC 405 D 1 HETATM 28 O O3 PLC . . . Y 5 78.411 -38.266 27.5 1 158.05 ? O3 PLC 405 D 1 HETATM 29 O O1P PLC . . . Y 5 77.291 -38.849 20.686 1 180.83 ? O1P PLC 405 D 1 HETATM 30 O O2P PLC . . . Y 5 79.859 -39.361 20.827 1 180.74 ? O2P PLC 405 D 1 HETATM 31 O O3P PLC . . . Y 5 78.316 -39.01 22.954 1 174.28 ? O3P PLC 405 D 1 HETATM 32 O O4P PLC . . . Y 5 78.009 -41.04 21.469 1 179.44 ? O4P PLC 405 D 1 HETATM 33 N N PLC . . . Y 5 79.669 -44.396 20.757 1 176 ? N PLC 405 D 1 HETATM 34 P P PLC . . . Y 5 78.522 -39.477 21.448 1 179.65 ? P PLC 405 D 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 34 #