data_4HFC # _model_server_result.job_id 8yJ4f0akCB65tlN4GDdpZQ _model_server_result.datetime_utc '2024-11-23 20:08:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hfc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":401}' # _entry.id 4HFC # _exptl.entry_id 4HFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.22 _cell.angle_gamma 90 _cell.entry_id 4HFC _cell.length_a 180.88 _cell.length_b 133.14 _cell.length_c 159.35 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 N N N ? 2 U N N ? 2 V N N ? 2 AA N N ? 2 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 68 A PRO 68 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc2 A O ILE 71 A ILE 71 1_555 L NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc3 B O PRO 68 B PRO 68 1_555 S NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc4 B O ILE 71 B ILE 71 1_555 S NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 C O ILE 71 C ILE 71 1_555 Y NA NA . C NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc6 D O PRO 68 D PRO 68 1_555 EA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.197 ? metalc ? metalc7 D O ILE 71 D ILE 71 1_555 EA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc8 E O PRO 68 E PRO 68 1_555 LA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc9 E O ILE 71 E ILE 71 1_555 LA NA NA . E NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 208 n n C1B O1B LMT sing 209 n n C1B O5B LMT sing 210 n n C1B H1B LMT sing 211 n n C2B C3B LMT sing 212 n n C2B O2B LMT sing 213 n n C2B H2B LMT sing 214 n n C3B C4B LMT sing 215 n n C3B O3B LMT sing 216 n n C3B H3B LMT sing 217 n n C4B C5B LMT sing 218 n n C4B O4' LMT sing 219 n n C4B H4B LMT sing 220 n n C5B C6B LMT sing 221 n n C5B O5B LMT sing 222 n n C5B H5B LMT sing 223 n n C6B O6B LMT sing 224 n n C6B "H6'2" LMT sing 225 n n C6B "H6'1" LMT sing 226 n n O1B C4' LMT sing 227 n n O2B H2O1 LMT sing 228 n n O3B H3O1 LMT sing 229 n n O4' H4O1 LMT sing 230 n n O6B H6B LMT sing 231 n n C1' C2' LMT sing 232 n n C1' O1' LMT sing 233 n n C1' O5' LMT sing 234 n n C1' H1' LMT sing 235 n n C2' C3' LMT sing 236 n n C2' O2' LMT sing 237 n n C2' H2' LMT sing 238 n n C3' C4' LMT sing 239 n n C3' O3' LMT sing 240 n n C3' H3' LMT sing 241 n n C4' C5' LMT sing 242 n n C4' H4' LMT sing 243 n n C5' C6' LMT sing 244 n n C5' O5' LMT sing 245 n n C5' H5' LMT sing 246 n n C6' O6' LMT sing 247 n n C6' H6D LMT sing 248 n n C6' H6E LMT sing 249 n n O1' C1 LMT sing 250 n n O2' H2O2 LMT sing 251 n n O3' H3O2 LMT sing 252 n n O6' H6' LMT sing 253 n n C1 C2 LMT sing 254 n n C1 H12 LMT sing 255 n n C1 H11 LMT sing 256 n n C2 C3 LMT sing 257 n n C2 H22 LMT sing 258 n n C2 H21 LMT sing 259 n n C3 C4 LMT sing 260 n n C3 H32 LMT sing 261 n n C3 H31 LMT sing 262 n n C4 C5 LMT sing 263 n n C4 H42 LMT sing 264 n n C4 H41 LMT sing 265 n n C5 C6 LMT sing 266 n n C5 H52 LMT sing 267 n n C5 H51 LMT sing 268 n n C6 C7 LMT sing 269 n n C6 H62 LMT sing 270 n n C6 H61 LMT sing 271 n n C7 C8 LMT sing 272 n n C7 H72 LMT sing 273 n n C7 H71 LMT sing 274 n n C8 C9 LMT sing 275 n n C8 H82 LMT sing 276 n n C8 H81 LMT sing 277 n n C9 C10 LMT sing 278 n n C9 H92 LMT sing 279 n n C9 H91 LMT sing 280 n n C10 C11 LMT sing 281 n n C10 H102 LMT sing 282 n n C10 H101 LMT sing 283 n n C11 C12 LMT sing 284 n n C11 H112 LMT sing 285 n n C11 H111 LMT sing 286 n n C12 H123 LMT sing 287 n n C12 H122 LMT sing 288 n n C12 H121 LMT sing 289 n n # _atom_sites.entry_id 4HFC _atom_sites.fract_transf_matrix[1][1] 0.005529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001197 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 401 5 LMT LMT . G 3 BRJ A 1 402 1 BRJ BRJ . H 4 CL A 1 403 4 CL CL . I 4 CL A 1 404 6 CL CL . J 4 CL A 1 405 7 CL CL . K 5 NA A 1 406 1 NA NA . L 5 NA A 1 407 3 NA NA . M 6 PLC A 1 408 1 PLC PLC . N 2 LMT B 1 401 6 LMT LMT . O 4 CL B 1 402 5 CL CL . P 3 BRJ B 1 403 1 BRJ BRJ . Q 7 ACT B 1 404 1 ACT ACT . R 7 ACT B 1 405 3 ACT ACT . S 5 NA B 1 406 2 NA NA . T 6 PLC B 1 407 2 PLC PLC . U 2 LMT C 1 401 1 LMT LMT . V 2 LMT C 1 402 4 LMT LMT . W 4 CL C 1 403 1 CL CL . X 3 BRJ C 1 404 1 BRJ BRJ . Y 5 NA C 1 405 6 NA NA . Z 6 PLC C 1 406 3 PLC PLC . AA 2 LMT D 1 401 2 LMT LMT . BA 4 CL D 1 402 2 CL CL . CA 7 ACT D 1 403 4 ACT ACT . DA 3 BRJ D 1 404 1 BRJ BRJ . EA 5 NA D 1 405 5 NA NA . FA 6 PLC D 1 406 4 PLC PLC . GA 2 LMT E 1 401 3 LMT LMT . HA 4 CL E 1 402 3 CL CL . IA 7 ACT E 1 403 2 ACT ACT . JA 7 ACT E 1 404 5 ACT ACT . KA 3 BRJ E 1 405 1 BRJ BRJ . LA 5 NA E 1 406 4 NA NA . MA 6 PLC E 1 407 5 PLC PLC . NA 8 HOH A 1 501 1 HOH HOH . NA 8 HOH A 2 502 3 HOH HOH . NA 8 HOH A 3 503 6 HOH HOH . NA 8 HOH A 4 504 26 HOH HOH . NA 8 HOH A 5 505 29 HOH HOH . NA 8 HOH A 6 506 34 HOH HOH . NA 8 HOH A 7 507 49 HOH HOH . NA 8 HOH A 8 508 50 HOH HOH . NA 8 HOH A 9 509 56 HOH HOH . NA 8 HOH A 10 510 60 HOH HOH . NA 8 HOH A 11 511 62 HOH HOH . NA 8 HOH A 12 512 81 HOH HOH . NA 8 HOH A 13 513 89 HOH HOH . NA 8 HOH A 14 514 90 HOH HOH . NA 8 HOH A 15 515 91 HOH HOH . NA 8 HOH A 16 516 92 HOH HOH . OA 8 HOH B 1 501 4 HOH HOH . OA 8 HOH B 2 502 8 HOH HOH . OA 8 HOH B 3 503 12 HOH HOH . OA 8 HOH B 4 504 13 HOH HOH . OA 8 HOH B 5 505 16 HOH HOH . OA 8 HOH B 6 506 21 HOH HOH . OA 8 HOH B 7 507 23 HOH HOH . OA 8 HOH B 8 508 33 HOH HOH . OA 8 HOH B 9 509 39 HOH HOH . OA 8 HOH B 10 510 42 HOH HOH . OA 8 HOH B 11 511 43 HOH HOH . OA 8 HOH B 12 512 46 HOH HOH . OA 8 HOH B 13 513 48 HOH HOH . OA 8 HOH B 14 514 54 HOH HOH . OA 8 HOH B 15 515 59 HOH HOH . OA 8 HOH B 16 516 64 HOH HOH . OA 8 HOH B 17 517 67 HOH HOH . OA 8 HOH B 18 518 70 HOH HOH . OA 8 HOH B 19 519 76 HOH HOH . OA 8 HOH B 20 520 83 HOH HOH . OA 8 HOH B 21 521 85 HOH HOH . PA 8 HOH C 1 501 7 HOH HOH . PA 8 HOH C 2 502 9 HOH HOH . PA 8 HOH C 3 503 15 HOH HOH . PA 8 HOH C 4 504 20 HOH HOH . PA 8 HOH C 5 505 24 HOH HOH . PA 8 HOH C 6 506 25 HOH HOH . PA 8 HOH C 7 507 27 HOH HOH . PA 8 HOH C 8 508 28 HOH HOH . PA 8 HOH C 9 509 31 HOH HOH . PA 8 HOH C 10 510 44 HOH HOH . PA 8 HOH C 11 511 45 HOH HOH . PA 8 HOH C 12 512 57 HOH HOH . PA 8 HOH C 13 513 63 HOH HOH . PA 8 HOH C 14 514 65 HOH HOH . PA 8 HOH C 15 515 66 HOH HOH . PA 8 HOH C 16 516 75 HOH HOH . PA 8 HOH C 17 517 84 HOH HOH . PA 8 HOH C 18 518 86 HOH HOH . PA 8 HOH C 19 519 94 HOH HOH . QA 8 HOH D 1 501 2 HOH HOH . QA 8 HOH D 2 502 5 HOH HOH . QA 8 HOH D 3 503 17 HOH HOH . QA 8 HOH D 4 504 18 HOH HOH . QA 8 HOH D 5 505 19 HOH HOH . QA 8 HOH D 6 506 30 HOH HOH . QA 8 HOH D 7 507 38 HOH HOH . QA 8 HOH D 8 508 40 HOH HOH . QA 8 HOH D 9 509 47 HOH HOH . QA 8 HOH D 10 510 51 HOH HOH . QA 8 HOH D 11 511 52 HOH HOH . QA 8 HOH D 12 512 53 HOH HOH . QA 8 HOH D 13 513 58 HOH HOH . QA 8 HOH D 14 514 61 HOH HOH . QA 8 HOH D 15 515 73 HOH HOH . QA 8 HOH D 16 516 74 HOH HOH . QA 8 HOH D 17 517 77 HOH HOH . QA 8 HOH D 18 518 78 HOH HOH . QA 8 HOH D 19 519 80 HOH HOH . QA 8 HOH D 20 520 82 HOH HOH . QA 8 HOH D 21 521 87 HOH HOH . QA 8 HOH D 22 522 93 HOH HOH . RA 8 HOH E 1 501 10 HOH HOH . RA 8 HOH E 2 502 11 HOH HOH . RA 8 HOH E 3 503 14 HOH HOH . RA 8 HOH E 4 504 22 HOH HOH . RA 8 HOH E 5 505 32 HOH HOH . RA 8 HOH E 6 506 35 HOH HOH . RA 8 HOH E 7 507 36 HOH HOH . RA 8 HOH E 8 508 37 HOH HOH . RA 8 HOH E 9 509 41 HOH HOH . RA 8 HOH E 10 510 55 HOH HOH . RA 8 HOH E 11 511 68 HOH HOH . RA 8 HOH E 12 512 69 HOH HOH . RA 8 HOH E 13 513 71 HOH HOH . RA 8 HOH E 14 514 72 HOH HOH . RA 8 HOH E 15 515 79 HOH HOH . RA 8 HOH E 16 516 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . U 2 53.032 -31.903 35.528 1 95.78 ? C1 LMT 401 C 1 HETATM 2 C C2 LMT . . . U 2 53.898 -31.62 36.778 1 94.09 ? C2 LMT 401 C 1 HETATM 3 C C3 LMT . . . U 2 53.109 -31.234 38.057 1 90.81 ? C3 LMT 401 C 1 HETATM 4 C C4 LMT . . . U 2 54.039 -30.769 39.217 1 89.14 ? C4 LMT 401 C 1 HETATM 5 C C5 LMT . . . U 2 53.789 -31.526 40.568 1 86.87 ? C5 LMT 401 C 1 HETATM 6 C C6 LMT . . . U 2 54.513 -30.851 41.755 1 84 ? C6 LMT 401 C 1 HETATM 7 C C7 LMT . . . U 2 53.561 -30.54 42.938 1 81.65 ? C7 LMT 401 C 1 HETATM 8 C C8 LMT . . . U 2 54.41 -30.056 44.12 1 80.5 ? C8 LMT 401 C 1 HETATM 9 C C9 LMT . . . U 2 53.56 -29.895 45.388 1 79.93 ? C9 LMT 401 C 1 HETATM 10 C C10 LMT . . . U 2 54.414 -29.638 46.679 1 77.57 ? C10 LMT 401 C 1 HETATM 11 C C11 LMT . . . U 2 53.591 -29.979 47.955 1 73.84 ? C11 LMT 401 C 1 HETATM 12 C C12 LMT . . . U 2 53.921 -29.147 49.187 1 69.86 ? C12 LMT 401 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #