data_4HFE # _model_server_result.job_id vqCIBQUL5jpdYQgB7YV2ag _model_server_result.datetime_utc '2024-11-30 03:49:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":403}' # _entry.id 4HFE # _exptl.entry_id 4HFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.17 _cell.angle_gamma 90 _cell.entry_id 4HFE _cell.length_a 180.99 _cell.length_b 133.62 _cell.length_c 159.13 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 U N N ? 4 DA N N ? 4 OA N N ? 4 WA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ILE 71 A ILE 71 1_555 J NA NA . A NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc2 B O ILE 71 B ILE 71 1_555 U NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc3 C O PRO 68 C PRO 68 1_555 DA NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.2 ? metalc ? metalc4 C O ILE 71 C ILE 71 1_555 DA NA NA . C NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc5 D O ILE 71 D ILE 71 1_555 OA NA NA . D NA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc6 E O PRO 68 E PRO 68 1_555 WA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc7 E O ILE 71 E ILE 71 1_555 WA NA NA . E NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HFE _atom_sites.fract_transf_matrix[1][1] 0.005525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001192 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 ACT A 1 401 4 ACT ACT . G 3 CL A 1 402 3 CL CL . H 3 CL A 1 403 6 CL CL . I 3 CL A 1 404 7 CL CL . J 4 NA A 1 405 8 NA NA . K 4 NA A 1 406 13 NA NA . L 5 EOH A 1 407 1 EOH EOH . M 2 ACT A 1 408 1 ACT ACT . N 6 LMT A 1 409 4 LMT LMT . O 6 LMT A 1 410 5 LMT LMT . P 7 PLC A 1 411 1 PLC PLC . Q 8 UNL A 1 412 1 UNL UNK . R 8 UNL A 1 413 10 UNL UNK . S 2 ACT B 1 401 3 ACT ACT . T 3 CL B 1 402 4 CL CL . U 4 NA B 1 403 9 NA NA . V 2 ACT B 1 404 4 ACT ACT . W 6 LMT B 1 405 6 LMT LMT . X 5 EOH B 1 406 1 EOH EOH . Y 7 PLC B 1 407 2 PLC PLC . Z 8 UNL B 1 408 2 UNL UNK . AA 8 UNL B 1 409 3 UNL UNK . BA 2 ACT C 1 401 2 ACT ACT . CA 3 CL C 1 402 5 CL CL . DA 4 NA C 1 403 10 NA NA . EA 2 ACT C 1 404 5 ACT ACT . FA 6 LMT C 1 405 1 LMT LMT . GA 5 EOH C 1 406 1 EOH EOH . HA 7 PLC C 1 407 3 PLC PLC . IA 8 UNL C 1 408 4 UNL UNK . JA 8 UNL C 1 409 5 UNL UNK . KA 2 ACT D 1 401 1 ACT ACT . LA 5 EOH D 1 402 1 EOH EOH . MA 5 EOH D 1 403 1 EOH EOH . NA 3 CL D 1 404 1 CL CL . OA 4 NA D 1 405 11 NA NA . PA 2 ACT D 1 406 2 ACT ACT . QA 6 LMT D 1 407 2 LMT LMT . RA 7 PLC D 1 408 4 PLC PLC . SA 8 UNL D 1 409 6 UNL UNK . TA 8 UNL D 1 410 7 UNL UNK . UA 2 ACT E 1 401 5 ACT ACT . VA 3 CL E 1 402 2 CL CL . WA 4 NA E 1 403 12 NA NA . XA 2 ACT E 1 404 3 ACT ACT . YA 6 LMT E 1 405 3 LMT LMT . ZA 7 PLC E 1 406 5 PLC PLC . AB 8 UNL E 1 407 8 UNL UNK . BB 8 UNL E 1 408 9 UNL UNK . CB 9 HOH A 1 501 6 HOH HOH . CB 9 HOH A 2 502 8 HOH HOH . CB 9 HOH A 3 503 11 HOH HOH . CB 9 HOH A 4 504 14 HOH HOH . CB 9 HOH A 5 505 20 HOH HOH . CB 9 HOH A 6 506 22 HOH HOH . CB 9 HOH A 7 507 24 HOH HOH . CB 9 HOH A 8 508 34 HOH HOH . CB 9 HOH A 9 509 40 HOH HOH . CB 9 HOH A 10 510 41 HOH HOH . CB 9 HOH A 11 511 42 HOH HOH . CB 9 HOH A 12 512 53 HOH HOH . CB 9 HOH A 13 513 74 HOH HOH . CB 9 HOH A 14 514 92 HOH HOH . CB 9 HOH A 15 515 93 HOH HOH . CB 9 HOH A 16 516 94 HOH HOH . CB 9 HOH A 17 517 99 HOH HOH . CB 9 HOH A 18 518 100 HOH HOH . CB 9 HOH A 19 519 103 HOH HOH . DB 9 HOH B 1 501 4 HOH HOH . DB 9 HOH B 2 502 12 HOH HOH . DB 9 HOH B 3 503 15 HOH HOH . DB 9 HOH B 4 504 16 HOH HOH . DB 9 HOH B 5 505 23 HOH HOH . DB 9 HOH B 6 506 39 HOH HOH . DB 9 HOH B 7 507 43 HOH HOH . DB 9 HOH B 8 508 44 HOH HOH . DB 9 HOH B 9 509 45 HOH HOH . DB 9 HOH B 10 510 52 HOH HOH . DB 9 HOH B 11 511 54 HOH HOH . DB 9 HOH B 12 512 58 HOH HOH . DB 9 HOH B 13 513 59 HOH HOH . DB 9 HOH B 14 514 66 HOH HOH . DB 9 HOH B 15 515 75 HOH HOH . DB 9 HOH B 16 516 79 HOH HOH . DB 9 HOH B 17 517 90 HOH HOH . DB 9 HOH B 18 518 104 HOH HOH . DB 9 HOH B 19 519 105 HOH HOH . EB 9 HOH C 1 501 9 HOH HOH . EB 9 HOH C 2 502 17 HOH HOH . EB 9 HOH C 3 503 18 HOH HOH . EB 9 HOH C 4 504 26 HOH HOH . EB 9 HOH C 5 505 27 HOH HOH . EB 9 HOH C 6 506 46 HOH HOH . EB 9 HOH C 7 507 47 HOH HOH . EB 9 HOH C 8 508 48 HOH HOH . EB 9 HOH C 9 509 49 HOH HOH . EB 9 HOH C 10 510 56 HOH HOH . EB 9 HOH C 11 511 60 HOH HOH . EB 9 HOH C 12 512 68 HOH HOH . EB 9 HOH C 13 513 69 HOH HOH . EB 9 HOH C 14 514 71 HOH HOH . EB 9 HOH C 15 515 72 HOH HOH . EB 9 HOH C 16 516 73 HOH HOH . EB 9 HOH C 17 517 76 HOH HOH . EB 9 HOH C 18 518 77 HOH HOH . EB 9 HOH C 19 519 78 HOH HOH . EB 9 HOH C 20 520 84 HOH HOH . EB 9 HOH C 21 521 85 HOH HOH . EB 9 HOH C 22 522 95 HOH HOH . FB 9 HOH D 1 501 10 HOH HOH . FB 9 HOH D 2 502 19 HOH HOH . FB 9 HOH D 3 503 30 HOH HOH . FB 9 HOH D 4 504 31 HOH HOH . FB 9 HOH D 5 505 32 HOH HOH . FB 9 HOH D 6 506 33 HOH HOH . FB 9 HOH D 7 507 38 HOH HOH . FB 9 HOH D 8 508 50 HOH HOH . FB 9 HOH D 9 509 55 HOH HOH . FB 9 HOH D 10 510 57 HOH HOH . FB 9 HOH D 11 511 63 HOH HOH . FB 9 HOH D 12 512 67 HOH HOH . FB 9 HOH D 13 513 70 HOH HOH . FB 9 HOH D 14 514 86 HOH HOH . FB 9 HOH D 15 515 87 HOH HOH . FB 9 HOH D 16 516 88 HOH HOH . FB 9 HOH D 17 517 96 HOH HOH . FB 9 HOH D 18 518 97 HOH HOH . FB 9 HOH D 19 519 98 HOH HOH . FB 9 HOH D 20 520 106 HOH HOH . GB 9 HOH E 1 501 1 HOH HOH . GB 9 HOH E 2 502 2 HOH HOH . GB 9 HOH E 3 503 3 HOH HOH . GB 9 HOH E 4 504 5 HOH HOH . GB 9 HOH E 5 505 7 HOH HOH . GB 9 HOH E 6 506 13 HOH HOH . GB 9 HOH E 7 507 21 HOH HOH . GB 9 HOH E 8 508 25 HOH HOH . GB 9 HOH E 9 509 28 HOH HOH . GB 9 HOH E 10 510 29 HOH HOH . GB 9 HOH E 11 511 35 HOH HOH . GB 9 HOH E 12 512 36 HOH HOH . GB 9 HOH E 13 513 37 HOH HOH . GB 9 HOH E 14 514 51 HOH HOH . GB 9 HOH E 15 515 61 HOH HOH . GB 9 HOH E 16 516 62 HOH HOH . GB 9 HOH E 17 517 64 HOH HOH . GB 9 HOH E 18 518 65 HOH HOH . GB 9 HOH E 19 519 80 HOH HOH . GB 9 HOH E 20 520 81 HOH HOH . GB 9 HOH E 21 521 82 HOH HOH . GB 9 HOH E 22 522 83 HOH HOH . GB 9 HOH E 23 523 89 HOH HOH . GB 9 HOH E 24 524 91 HOH HOH . GB 9 HOH E 25 525 101 HOH HOH . GB 9 HOH E 26 526 102 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 4 _atom_site.Cartn_x 16.96 _atom_site.Cartn_y -25.947 _atom_site.Cartn_z 2.783 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.22 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #