data_4HFP # _model_server_result.job_id iovZYnxW56pu7Wh0aF2mKQ _model_server_result.datetime_utc '2024-12-27 00:49:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4HFP # _exptl.entry_id 4HFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HFP _cell.length_a 77.229 _cell.length_b 77.229 _cell.length_c 94.875 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 4 C CYS 1 1_555 D SG CYS 119 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 D SG CYS 28 D CYS 42 1_555 D SG CYS 44 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 173 D CYS 168 1_555 D SG CYS 187 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 D SG CYS 201 D CYS 191 1_555 D SG CYS 231 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 B O ARG 233 B ARG 221 1_555 E NA NA . B NA 401 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc2 B O LYS 236 B LYS 224 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc3 E NA NA . B NA 401 1_555 J O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc4 E NA NA . B NA 401 1_555 J O HOH . B HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc5 E NA NA . B NA 401 1_555 J O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? metalc ? metalc6 E NA NA . B NA 401 1_555 J O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc7 D O ARG 233 D ARG 221 1_555 G NA NA . D NA 401 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc8 D O LYS 236 D LYS 224 1_555 G NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HFP _atom_sites.fract_transf_matrix[1][1] 0.012949 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01054 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA B 1 401 401 NA NA . F 4 15U B 1 402 301 15U NNN . G 3 NA D 1 401 401 NA NA . H 4 15U D 1 402 301 15U NNN . I 5 HOH A 1 101 9 HOH HOH . I 5 HOH A 2 102 28 HOH HOH . I 5 HOH A 3 103 40 HOH HOH . I 5 HOH A 4 104 61 HOH HOH . I 5 HOH A 5 105 65 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 3 HOH HOH . J 5 HOH B 3 503 4 HOH HOH . J 5 HOH B 4 504 5 HOH HOH . J 5 HOH B 5 505 6 HOH HOH . J 5 HOH B 6 506 8 HOH HOH . J 5 HOH B 7 507 10 HOH HOH . J 5 HOH B 8 508 14 HOH HOH . J 5 HOH B 9 509 20 HOH HOH . J 5 HOH B 10 510 21 HOH HOH . J 5 HOH B 11 511 25 HOH HOH . J 5 HOH B 12 512 26 HOH HOH . J 5 HOH B 13 513 27 HOH HOH . J 5 HOH B 14 514 29 HOH HOH . J 5 HOH B 15 515 30 HOH HOH . J 5 HOH B 16 516 31 HOH HOH . J 5 HOH B 17 517 32 HOH HOH . J 5 HOH B 18 518 37 HOH HOH . J 5 HOH B 19 519 38 HOH HOH . J 5 HOH B 20 520 39 HOH HOH . J 5 HOH B 21 521 43 HOH HOH . J 5 HOH B 22 522 44 HOH HOH . J 5 HOH B 23 523 45 HOH HOH . J 5 HOH B 24 524 49 HOH HOH . J 5 HOH B 25 525 50 HOH HOH . J 5 HOH B 26 526 51 HOH HOH . J 5 HOH B 27 527 53 HOH HOH . J 5 HOH B 28 528 56 HOH HOH . J 5 HOH B 29 529 66 HOH HOH . K 5 HOH C 1 101 1 HOH HOH . K 5 HOH C 2 102 15 HOH HOH . K 5 HOH C 3 103 18 HOH HOH . K 5 HOH C 4 104 23 HOH HOH . K 5 HOH C 5 105 41 HOH HOH . K 5 HOH C 6 106 46 HOH HOH . L 5 HOH D 1 501 7 HOH HOH . L 5 HOH D 2 502 11 HOH HOH . L 5 HOH D 3 503 12 HOH HOH . L 5 HOH D 4 504 13 HOH HOH . L 5 HOH D 5 505 16 HOH HOH . L 5 HOH D 6 506 17 HOH HOH . L 5 HOH D 7 507 19 HOH HOH . L 5 HOH D 8 508 22 HOH HOH . L 5 HOH D 9 509 24 HOH HOH . L 5 HOH D 10 510 33 HOH HOH . L 5 HOH D 11 511 34 HOH HOH . L 5 HOH D 12 512 35 HOH HOH . L 5 HOH D 13 513 36 HOH HOH . L 5 HOH D 14 514 42 HOH HOH . L 5 HOH D 15 515 47 HOH HOH . L 5 HOH D 16 516 48 HOH HOH . L 5 HOH D 17 517 52 HOH HOH . L 5 HOH D 18 518 54 HOH HOH . L 5 HOH D 19 519 55 HOH HOH . L 5 HOH D 20 520 57 HOH HOH . L 5 HOH D 21 521 58 HOH HOH . L 5 HOH D 22 522 59 HOH HOH . L 5 HOH D 23 523 60 HOH HOH . L 5 HOH D 24 524 62 HOH HOH . L 5 HOH D 25 525 63 HOH HOH . L 5 HOH D 26 526 64 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 43.015 _atom_site.Cartn_y -28.132 _atom_site.Cartn_z -14.074 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #