data_4HFP
#
_model_server_result.job_id            sSJRbYh-AUU1tEGG2aCB3Q 
_model_server_result.datetime_utc      '2024-12-27 00:56:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hfp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    4HFP 
#
_exptl.entry_id    4HFP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              508.634 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HFP 
_cell.length_a            77.229 
_cell.length_b            77.229 
_cell.length_c            94.875 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HFP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf5 C SG CYS 4 C CYS 1 1_555 D SG CYS 119 D CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf6 D SG CYS 28 D CYS 42 1_555 D SG CYS 44 D CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 D SG CYS 173 D CYS 168 1_555 D SG CYS 187 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 D SG CYS 201 D CYS 191 1_555 D SG CYS 231 D CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc1 B O ARG 233 B ARG 221 1_555 E NA NA . B NA 401 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc2 B O LYS 236 B LYS 224 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc3 E NA NA . B NA 401 1_555 J O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? 
metalc ? metalc4 E NA NA . B NA 401 1_555 J O HOH . B HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
metalc ? metalc5 E NA NA . B NA 401 1_555 J O HOH . B HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.12 ? 
metalc ? metalc6 E NA NA . B NA 401 1_555 J O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc7 D O ARG 233 D ARG 221 1_555 G NA NA . D NA 401 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc8 D O LYS 236 D LYS 224 1_555 G NA NA . D NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
#
_chem_comp.formula           'C23 H36 N6 O5 S' 
_chem_comp.formula_weight    508.634 
_chem_comp.id                15U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R,4R)-4-methyl-1-(N~2~-{[(3S)-3-methyl-1,2,3,4-tetrahydroquinolin-8-yl]sulfonyl}-L-arginyl)piperidine-2-carboxylic acid' 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     S-argatroban 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C2 15U sing 1 n n 
C2 C3 15U sing 2 n n 
C2 C1 15U sing 3 n n 
C3 C4 15U sing 4 n n 
C1 N 15U sing 5 n n 
C4 C5 15U doub 6 n y 
C4 C9 15U sing 7 n y 
C41 C51 15U sing 8 n n 
C41 C31 15U sing 9 n n 
C5 C6 15U sing 10 n y 
C71 C31 15U sing 11 n n 
C51 N2 15U sing 12 n n 
N C9 15U sing 13 n n 
C9 C8 15U doub 14 n y 
C31 C21 15U sing 15 n n 
O C 15U doub 16 n n 
C6 C7 15U doub 17 n y 
N2 C 15U sing 18 n n 
N2 C11 15U sing 19 n n 
C CA 15U sing 20 n n 
C8 C7 15U sing 21 n y 
C8 S 15U sing 22 n n 
C21 C11 15U sing 23 n n 
C11 C61 15U sing 24 n n 
NH2 CZ 15U doub 25 n n 
O11 C61 15U doub 26 n n 
N1 CA 15U sing 27 n n 
N1 S 15U sing 28 n n 
C61 O21 15U sing 29 n n 
CA CB 15U sing 30 n n 
S O1 15U doub 31 n n 
S O2 15U doub 32 n n 
CG CB 15U sing 33 n n 
CG CD 15U sing 34 n n 
CZ NH1 15U sing 35 n n 
CZ NE 15U sing 36 n n 
CD NE 15U sing 37 n n 
C1 H1 15U sing 38 n n 
C1 H2 15U sing 39 n n 
C2 H3 15U sing 40 n n 
C3 H4 15U sing 41 n n 
C3 H5 15U sing 42 n n 
C5 H6 15U sing 43 n n 
C6 H7 15U sing 44 n n 
C7 H8 15U sing 45 n n 
C10 H9 15U sing 46 n n 
C10 H10 15U sing 47 n n 
C10 H11 15U sing 48 n n 
N H12 15U sing 49 n n 
N1 H13 15U sing 50 n n 
CA H14 15U sing 51 n n 
CB H15 15U sing 52 n n 
CB H16 15U sing 53 n n 
CG H17 15U sing 54 n n 
CG H18 15U sing 55 n n 
CD H19 15U sing 56 n n 
CD H20 15U sing 57 n n 
NE H21 15U sing 58 n n 
NH1 H22 15U sing 59 n n 
NH1 H23 15U sing 60 n n 
NH2 H24 15U sing 61 n n 
C11 H26 15U sing 62 n n 
C21 H27 15U sing 63 n n 
C21 H28 15U sing 64 n n 
C31 H29 15U sing 65 n n 
C41 H30 15U sing 66 n n 
C41 H31 15U sing 67 n n 
C51 H32 15U sing 68 n n 
C51 H33 15U sing 69 n n 
O21 H34 15U sing 70 n n 
C71 H35 15U sing 71 n n 
C71 H36 15U sing 72 n n 
C71 H37 15U sing 73 n n 
#
_atom_sites.entry_id                     4HFP 
_atom_sites.fract_transf_matrix[1][1]    0.012949 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01054 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NA B 1 401 401 NA NA . 
F 4 15U B 1 402 301 15U NNN . 
G 3 NA D 1 401 401 NA NA . 
H 4 15U D 1 402 301 15U NNN . 
I 5 HOH A 1 101 9 HOH HOH . 
I 5 HOH A 2 102 28 HOH HOH . 
I 5 HOH A 3 103 40 HOH HOH . 
I 5 HOH A 4 104 61 HOH HOH . 
I 5 HOH A 5 105 65 HOH HOH . 
J 5 HOH B 1 501 2 HOH HOH . 
J 5 HOH B 2 502 3 HOH HOH . 
J 5 HOH B 3 503 4 HOH HOH . 
J 5 HOH B 4 504 5 HOH HOH . 
J 5 HOH B 5 505 6 HOH HOH . 
J 5 HOH B 6 506 8 HOH HOH . 
J 5 HOH B 7 507 10 HOH HOH . 
J 5 HOH B 8 508 14 HOH HOH . 
J 5 HOH B 9 509 20 HOH HOH . 
J 5 HOH B 10 510 21 HOH HOH . 
J 5 HOH B 11 511 25 HOH HOH . 
J 5 HOH B 12 512 26 HOH HOH . 
J 5 HOH B 13 513 27 HOH HOH . 
J 5 HOH B 14 514 29 HOH HOH . 
J 5 HOH B 15 515 30 HOH HOH . 
J 5 HOH B 16 516 31 HOH HOH . 
J 5 HOH B 17 517 32 HOH HOH . 
J 5 HOH B 18 518 37 HOH HOH . 
J 5 HOH B 19 519 38 HOH HOH . 
J 5 HOH B 20 520 39 HOH HOH . 
J 5 HOH B 21 521 43 HOH HOH . 
J 5 HOH B 22 522 44 HOH HOH . 
J 5 HOH B 23 523 45 HOH HOH . 
J 5 HOH B 24 524 49 HOH HOH . 
J 5 HOH B 25 525 50 HOH HOH . 
J 5 HOH B 26 526 51 HOH HOH . 
J 5 HOH B 27 527 53 HOH HOH . 
J 5 HOH B 28 528 56 HOH HOH . 
J 5 HOH B 29 529 66 HOH HOH . 
K 5 HOH C 1 101 1 HOH HOH . 
K 5 HOH C 2 102 15 HOH HOH . 
K 5 HOH C 3 103 18 HOH HOH . 
K 5 HOH C 4 104 23 HOH HOH . 
K 5 HOH C 5 105 41 HOH HOH . 
K 5 HOH C 6 106 46 HOH HOH . 
L 5 HOH D 1 501 7 HOH HOH . 
L 5 HOH D 2 502 11 HOH HOH . 
L 5 HOH D 3 503 12 HOH HOH . 
L 5 HOH D 4 504 13 HOH HOH . 
L 5 HOH D 5 505 16 HOH HOH . 
L 5 HOH D 6 506 17 HOH HOH . 
L 5 HOH D 7 507 19 HOH HOH . 
L 5 HOH D 8 508 22 HOH HOH . 
L 5 HOH D 9 509 24 HOH HOH . 
L 5 HOH D 10 510 33 HOH HOH . 
L 5 HOH D 11 511 34 HOH HOH . 
L 5 HOH D 12 512 35 HOH HOH . 
L 5 HOH D 13 513 36 HOH HOH . 
L 5 HOH D 14 514 42 HOH HOH . 
L 5 HOH D 15 515 47 HOH HOH . 
L 5 HOH D 16 516 48 HOH HOH . 
L 5 HOH D 17 517 52 HOH HOH . 
L 5 HOH D 18 518 54 HOH HOH . 
L 5 HOH D 19 519 55 HOH HOH . 
L 5 HOH D 20 520 57 HOH HOH . 
L 5 HOH D 21 521 58 HOH HOH . 
L 5 HOH D 22 522 59 HOH HOH . 
L 5 HOH D 23 523 60 HOH HOH . 
L 5 HOH D 24 524 62 HOH HOH . 
L 5 HOH D 25 525 63 HOH HOH . 
L 5 HOH D 26 526 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S 15U . . . F 4 2.627 13.756 0.106 1 28.57 ? S 15U 402 B 1 
HETATM 2 O O1 15U . . . F 4 1.796 12.587 0.188 1 27.94 ? O1 15U 402 B 1 
HETATM 3 O O2 15U . . . F 4 2.519 14.499 1.336 1 27.53 ? O2 15U 402 B 1 
HETATM 4 C C1 15U . . . F 4 2.859 12.535 -4.232 1 27.09 ? C1 15U 402 B 1 
HETATM 5 C C2 15U . . . F 4 3.206 13.656 -5.211 1 27.43 ? C2 15U 402 B 1 
HETATM 6 C C3 15U . . . F 4 2.18 14.779 -5.095 1 27.68 ? C3 15U 402 B 1 
HETATM 7 C C4 15U . . . F 4 2.018 15.182 -3.641 1 28.19 ? C4 15U 402 B 1 
HETATM 8 C C5 15U . . . F 4 1.504 16.435 -3.308 1 27.93 ? C5 15U 402 B 1 
HETATM 9 C C6 15U . . . F 4 1.357 16.81 -1.97 1 27.8 ? C6 15U 402 B 1 
HETATM 10 C C7 15U . . . F 4 1.709 15.964 -0.914 1 27.53 ? C7 15U 402 B 1 
HETATM 11 C C8 15U . . . F 4 2.227 14.69 -1.137 1 27.59 ? C8 15U 402 B 1 
HETATM 12 C C9 15U . . . F 4 2.41 14.244 -2.548 1 27.99 ? C9 15U 402 B 1 
HETATM 13 C C10 15U . . . F 4 3.304 13.13 -6.64 1 27.4 ? C10 15U 402 B 1 
HETATM 14 N N 15U . . . F 4 2.91 13.024 -2.861 1 28.21 ? N 15U 402 B 1 
HETATM 15 N N1 15U . . . F 4 4.146 13.289 -0.092 1 27.04 ? N1 15U 402 B 1 
HETATM 16 C CA 15U . . . F 4 5.221 14.265 -0.031 1 26.13 ? CA 15U 402 B 1 
HETATM 17 C C 15U . . . F 4 5.782 14.569 -1.402 1 25.32 ? C 15U 402 B 1 
HETATM 18 O O 15U . . . F 4 5.719 13.709 -2.264 1 25.54 ? O 15U 402 B 1 
HETATM 19 C CB 15U . . . F 4 6.286 13.781 0.959 1 26.03 ? CB 15U 402 B 1 
HETATM 20 C CG 15U . . . F 4 7.159 12.658 0.411 1 24.95 ? CG 15U 402 B 1 
HETATM 21 C CD 15U . . . F 4 8.411 12.495 1.256 1 24.3 ? CD 15U 402 B 1 
HETATM 22 N NE 15U . . . F 4 8.707 11.093 1.473 1 23.67 ? NE 15U 402 B 1 
HETATM 23 C CZ 15U . . . F 4 9.512 10.378 0.684 1 23.78 ? CZ 15U 402 B 1 
HETATM 24 N NH1 15U . . . F 4 9.637 9.072 0.924 1 23.12 ? NH1 15U 402 B 1 
HETATM 25 N NH2 15U . . . F 4 10.149 10.912 -0.274 1 22.73 ? NH2 15U 402 B 1 
HETATM 26 N N2 15U . . . F 4 6.333 15.765 -1.651 1 24.9 ? N2 15U 402 B 1 
HETATM 27 C C11 15U . . . F 4 6.421 16.796 -0.597 1 24.95 ? C11 15U 402 B 1 
HETATM 28 C C21 15U . . . F 4 5.855 18.129 -1.11 1 24.35 ? C21 15U 402 B 1 
HETATM 29 C C31 15U . . . F 4 6.396 18.52 -2.484 1 24.91 ? C31 15U 402 B 1 
HETATM 30 C C41 15U . . . F 4 6.145 17.369 -3.452 1 24.58 ? C41 15U 402 B 1 
HETATM 31 C C51 15U . . . F 4 6.918 16.153 -2.946 1 24.47 ? C51 15U 402 B 1 
HETATM 32 C C61 15U . . . F 4 7.828 16.905 -0.06 1 25.45 ? C61 15U 402 B 1 
HETATM 33 O O11 15U . . . F 4 8.602 15.936 -0.216 1 25.9 ? O11 15U 402 B 1 
HETATM 34 O O21 15U . . . F 4 8.178 17.951 0.53 1 25.88 ? O21 15U 402 B 1 
HETATM 35 C C71 15U . . . F 4 5.805 19.833 -2.986 1 24.81 ? C71 15U 402 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           400 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#