data_4HG0 # _model_server_result.job_id s30KmJQWmszX2xU6cdnthQ _model_server_result.datetime_utc '2025-04-07 23:18:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4HG0 # _exptl.entry_id 4HG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HG0 _cell.length_a 71.953 _cell.length_b 71.953 _cell.length_c 123.53 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.53 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 56 A ASP 56 1_555 A N MSE 57 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 57 A MSE 57 1_555 A N LEU 58 A LEU 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 A C VAL 61 A VAL 61 1_555 A N MSE 62 A MSE 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C MSE 62 A MSE 62 1_555 A N ASP 63 A ASP 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ILE 72 A ILE 72 1_555 A N MSE 73 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 73 A MSE 73 1_555 A N ILE 74 A ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 A C GLN 78 A GLN 78 1_555 A N MSE 79 A MSE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 79 A MSE 79 1_555 A N ILE 80 A ILE 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C LEU 117 A LEU 117 1_555 A N MSE 118 A MSE 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 118 A MSE 118 1_555 A N ALA 119 A ALA 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale11 A C PHE 125 A PHE 125 1_555 A N MSE 126 A MSE 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 126 A MSE 126 1_555 A N ARG 127 A ARG 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 A C SER 134 A SER 134 1_555 A N MSE 135 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale14 A C MSE 135 A MSE 135 1_555 A N ASP 136 A ASP 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C ARG 153 A ARG 153 1_555 A N MSE 154 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 A C MSE 154 A MSE 154 1_555 A N LEU 155 A LEU 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale17 A C HIS 164 A HIS 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 A C MSE 165 A MSE 165 1_555 A N ALA 166 A ALA 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 A C VAL 243 A VAL 243 1_555 A N MSE 244 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale20 A C MSE 244 A MSE 244 1_555 A N GLN 245 A GLN 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale21 A C ALA 267 A ALA 267 1_555 A N MSE 268 A MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale22 A C MSE 268 A MSE 268 1_555 A N ALA 269 A ALA 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 4HG0 _atom_sites.fract_transf_matrix[1][1] 0.013898 _atom_sites.fract_transf_matrix[1][2] 0.008024 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AMP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id AMP _pdbx_nonpoly_scheme.auth_mon_id AMP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . B 2 2.849 14.605 58.155 1 164.21 ? P AMP 301 A 1 HETATM 2 O O1P AMP . . . B 2 1.904 14.168 59.253 1 165.07 ? O1P AMP 301 A 1 HETATM 3 O O2P AMP . . . B 2 4.267 14.126 58.346 1 158.97 ? O2P AMP 301 A 1 HETATM 4 O O3P AMP . . . B 2 2.334 14.425 56.742 1 165.93 ? O3P AMP 301 A 1 HETATM 5 O O5' AMP . . . B 2 2.908 16.187 58.374 1 147.75 ? O5' AMP 301 A 1 HETATM 6 C C5' AMP . . . B 2 3.508 17.05 57.408 1 143.11 ? C5' AMP 301 A 1 HETATM 7 C C4' AMP . . . B 2 2.646 18.253 57.081 1 135.56 ? C4' AMP 301 A 1 HETATM 8 O O4' AMP . . . B 2 1.369 17.799 56.568 1 129.48 ? O4' AMP 301 A 1 HETATM 9 C C3' AMP . . . B 2 2.328 19.157 58.262 1 134.65 ? C3' AMP 301 A 1 HETATM 10 O O3' AMP . . . B 2 3.276 20.224 58.295 1 134.1 ? O3' AMP 301 A 1 HETATM 11 C C2' AMP . . . B 2 0.955 19.725 57.907 1 128.81 ? C2' AMP 301 A 1 HETATM 12 O O2' AMP . . . B 2 1.006 20.926 57.165 1 123.96 ? O2' AMP 301 A 1 HETATM 13 C C1' AMP . . . B 2 0.313 18.585 57.102 1 124.32 ? C1' AMP 301 A 1 HETATM 14 N N9 AMP . . . B 2 -0.613 17.711 57.839 1 114.36 ? N9 AMP 301 A 1 HETATM 15 C C8 AMP . . . B 2 -0.268 16.684 58.638 1 125.89 ? C8 AMP 301 A 1 HETATM 16 N N7 AMP . . . B 2 -1.359 16.051 59.147 1 128.38 ? N7 AMP 301 A 1 HETATM 17 C C5 AMP . . . B 2 -2.447 16.678 58.653 1 117.39 ? C5 AMP 301 A 1 HETATM 18 C C6 AMP . . . B 2 -3.922 16.535 58.783 1 108.58 ? C6 AMP 301 A 1 HETATM 19 N N6 AMP . . . B 2 -4.474 15.571 59.555 1 112.25 ? N6 AMP 301 A 1 HETATM 20 N N1 AMP . . . B 2 -4.703 17.399 58.101 1 97.76 ? N1 AMP 301 A 1 HETATM 21 C C2 AMP . . . B 2 -4.186 18.369 57.323 1 89.76 ? C2 AMP 301 A 1 HETATM 22 N N3 AMP . . . B 2 -2.862 18.548 57.167 1 99.91 ? N3 AMP 301 A 1 HETATM 23 C C4 AMP . . . B 2 -1.949 17.76 57.791 1 107.45 ? C4 AMP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #