data_4HG7 # _model_server_result.job_id zbGaD1rRXKn62Rqs4_kN8A _model_server_result.datetime_utc '2024-12-21 13:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4HG7 # _exptl.entry_id 4HG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 581.49 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HG7 _cell.length_a 71.45 _cell.length_b 71.45 _cell.length_c 104.204 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -35.725 61.877515 -17.367333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H30 Cl2 N4 O4' _chem_comp.formula_weight 581.49 _chem_comp.id NUT _chem_comp.mon_nstd_flag . _chem_comp.name 4-({(4S,5R)-4,5-bis(4-chlorophenyl)-2-[4-methoxy-2-(propan-2-yloxy)phenyl]-4,5-dihydro-1H-imidazol-1-yl}carbonyl)piperazin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nutlin 3a' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C28 NUT doub 237 n n C28 C29 NUT sing 238 n n C28 N3 NUT sing 239 n n C29 N2 NUT sing 240 n n O3 C25 NUT doub 241 n n N3 C27 NUT sing 242 n n C25 N2 NUT sing 243 n n C25 N1 NUT sing 244 n n N2 C26 NUT sing 245 n n C27 C26 NUT sing 246 n n C11 C18 NUT sing 247 n n C11 N NUT sing 248 n n C11 C12 NUT sing 249 n n C3 C2 NUT doub 250 n y C3 C9 NUT sing 251 n y N1 C18 NUT sing 252 n n N1 C10 NUT sing 253 n n C2 C1 NUT sing 254 n y C17 C12 NUT doub 255 n y C17 C16 NUT sing 256 n y C18 C19 NUT sing 257 n n C10 N NUT doub 258 n n C10 C9 NUT sing 259 n n C9 C5 NUT doub 260 n y C O NUT sing 261 n n C12 C13 NUT sing 262 n y C1 O NUT sing 263 n n C1 C4 NUT doub 264 n y C16 C15 NUT doub 265 n y C5 C4 NUT sing 266 n y C5 O1 NUT sing 267 n n C8 C6 NUT sing 268 n n O1 C6 NUT sing 269 n n C19 C24 NUT doub 270 n y C19 C20 NUT sing 271 n y C24 C23 NUT sing 272 n y C13 C14 NUT doub 273 n y C15 C14 NUT sing 274 n y C15 CL NUT sing 275 n n C6 C7 NUT sing 276 n n C20 C21 NUT doub 277 n y C23 C22 NUT doub 278 n y C21 C22 NUT sing 279 n y C22 CL1 NUT sing 280 n n C29 H1 NUT sing 281 n n C29 H2 NUT sing 282 n n N3 H3 NUT sing 283 n n C27 H4 NUT sing 284 n n C27 H5 NUT sing 285 n n C26 H6 NUT sing 286 n n C26 H7 NUT sing 287 n n C3 H9 NUT sing 288 n n C2 H10 NUT sing 289 n n C6 H11 NUT sing 290 n n C8 H12 NUT sing 291 n n C8 H13 NUT sing 292 n n C8 H14 NUT sing 293 n n C7 H15 NUT sing 294 n n C7 H16 NUT sing 295 n n C7 H17 NUT sing 296 n n C4 H18 NUT sing 297 n n C H19 NUT sing 298 n n C H20 NUT sing 299 n n C H21 NUT sing 300 n n C18 H22 NUT sing 301 n n C24 H23 NUT sing 302 n n C23 H24 NUT sing 303 n n C21 H25 NUT sing 304 n n C20 H26 NUT sing 305 n n C11 H27 NUT sing 306 n n C17 H30 NUT sing 307 n n C16 H31 NUT sing 308 n n C14 H32 NUT sing 309 n n C13 H33 NUT sing 310 n n # _atom_sites.entry_id 4HG7 _atom_sites.fract_transf_matrix[1][1] 0.013996 _atom_sites.fract_transf_matrix[1][2] 0.00808 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NUT A 1 201 1 NUT NUT . C 3 SO4 A 1 202 1 SO4 SO4 . D 4 HOH A 1 301 1 HOH HOH . D 4 HOH A 2 302 2 HOH HOH . D 4 HOH A 3 303 3 HOH HOH . D 4 HOH A 4 304 4 HOH HOH . D 4 HOH A 5 305 5 HOH HOH . D 4 HOH A 6 306 6 HOH HOH . D 4 HOH A 7 307 7 HOH HOH . D 4 HOH A 8 308 8 HOH HOH . D 4 HOH A 9 309 9 HOH HOH . D 4 HOH A 10 310 10 HOH HOH . D 4 HOH A 11 311 11 HOH HOH . D 4 HOH A 12 312 12 HOH HOH . D 4 HOH A 13 313 13 HOH HOH . D 4 HOH A 14 314 14 HOH HOH . D 4 HOH A 15 315 15 HOH HOH . D 4 HOH A 16 316 16 HOH HOH . D 4 HOH A 17 317 17 HOH HOH . D 4 HOH A 18 318 18 HOH HOH . D 4 HOH A 19 319 19 HOH HOH . D 4 HOH A 20 320 20 HOH HOH . D 4 HOH A 21 321 21 HOH HOH . D 4 HOH A 22 322 22 HOH HOH . D 4 HOH A 23 323 23 HOH HOH . D 4 HOH A 24 324 24 HOH HOH . D 4 HOH A 25 325 25 HOH HOH . D 4 HOH A 26 326 26 HOH HOH . D 4 HOH A 27 327 27 HOH HOH . D 4 HOH A 28 328 28 HOH HOH . D 4 HOH A 29 329 29 HOH HOH . D 4 HOH A 30 330 30 HOH HOH . D 4 HOH A 31 331 31 HOH HOH . D 4 HOH A 32 332 32 HOH HOH . D 4 HOH A 33 333 33 HOH HOH . D 4 HOH A 34 334 34 HOH HOH . D 4 HOH A 35 335 35 HOH HOH . D 4 HOH A 36 336 36 HOH HOH . D 4 HOH A 37 337 37 HOH HOH . D 4 HOH A 38 338 38 HOH HOH . D 4 HOH A 39 339 39 HOH HOH . D 4 HOH A 40 340 40 HOH HOH . D 4 HOH A 41 341 41 HOH HOH . D 4 HOH A 42 342 42 HOH HOH . D 4 HOH A 43 343 43 HOH HOH . D 4 HOH A 44 344 44 HOH HOH . D 4 HOH A 45 345 45 HOH HOH . D 4 HOH A 46 346 46 HOH HOH . D 4 HOH A 47 347 47 HOH HOH . D 4 HOH A 48 348 48 HOH HOH . D 4 HOH A 49 349 49 HOH HOH . D 4 HOH A 50 350 50 HOH HOH . D 4 HOH A 51 351 51 HOH HOH . D 4 HOH A 52 352 52 HOH HOH . D 4 HOH A 53 353 53 HOH HOH . D 4 HOH A 54 354 54 HOH HOH . D 4 HOH A 55 355 55 HOH HOH . D 4 HOH A 56 356 56 HOH HOH . D 4 HOH A 57 357 57 HOH HOH . D 4 HOH A 58 358 58 HOH HOH . D 4 HOH A 59 359 59 HOH HOH . D 4 HOH A 60 360 60 HOH HOH . D 4 HOH A 61 361 61 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 63 HOH HOH . D 4 HOH A 64 364 64 HOH HOH . D 4 HOH A 65 365 65 HOH HOH . D 4 HOH A 66 366 66 HOH HOH . D 4 HOH A 67 367 67 HOH HOH . D 4 HOH A 68 368 68 HOH HOH . D 4 HOH A 69 369 69 HOH HOH . D 4 HOH A 70 370 70 HOH HOH . D 4 HOH A 71 371 71 HOH HOH . D 4 HOH A 72 372 72 HOH HOH . D 4 HOH A 73 373 73 HOH HOH . D 4 HOH A 74 374 74 HOH HOH . D 4 HOH A 75 375 75 HOH HOH . D 4 HOH A 76 376 76 HOH HOH . D 4 HOH A 77 377 77 HOH HOH . D 4 HOH A 78 378 78 HOH HOH . D 4 HOH A 79 379 79 HOH HOH . D 4 HOH A 80 380 80 HOH HOH . D 4 HOH A 81 381 81 HOH HOH . D 4 HOH A 82 382 82 HOH HOH . D 4 HOH A 83 383 83 HOH HOH . D 4 HOH A 84 384 84 HOH HOH . D 4 HOH A 85 385 85 HOH HOH . D 4 HOH A 86 386 86 HOH HOH . D 4 HOH A 87 387 87 HOH HOH . D 4 HOH A 88 388 88 HOH HOH . D 4 HOH A 89 389 89 HOH HOH . D 4 HOH A 90 390 90 HOH HOH . D 4 HOH A 91 391 91 HOH HOH . D 4 HOH A 92 392 92 HOH HOH . D 4 HOH A 93 393 93 HOH HOH . D 4 HOH A 94 394 94 HOH HOH . D 4 HOH A 95 395 95 HOH HOH . D 4 HOH A 96 396 96 HOH HOH . D 4 HOH A 97 397 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 NUT . . . B 2 -23.667 5.839 -16.568 1 18.16 ? O3 NUT 201 A 1 HETATM 2 C C25 NUT . . . B 2 -23.015 6.538 -15.757 1 16.08 ? C25 NUT 201 A 1 HETATM 3 N N2 NUT . . . B 2 -21.695 6.402 -15.71 1 16.62 ? N2 NUT 201 A 1 HETATM 4 C C29 NUT . . . B 2 -21.006 5.564 -16.697 1 18.26 ? C29 NUT 201 A 1 HETATM 5 C C28 NUT . . . B 2 -19.624 6.037 -17.066 1 21.25 ? C28 NUT 201 A 1 HETATM 6 O O2 NUT . . . B 2 -19.027 5.438 -17.957 1 26.4 ? O2 NUT 201 A 1 HETATM 7 N N3 NUT . . . B 2 -19.096 7.088 -16.423 1 19.48 ? N3 NUT 201 A 1 HETATM 8 C C27 NUT . . . B 2 -19.765 7.777 -15.316 1 18.67 ? C27 NUT 201 A 1 HETATM 9 C C26 NUT . . . B 2 -20.851 6.955 -14.647 1 17.26 ? C26 NUT 201 A 1 HETATM 10 N N1 NUT . . . B 2 -23.728 7.387 -14.97 1 13.52 ? N1 NUT 201 A 1 HETATM 11 C C10 NUT . . . B 2 -25.032 7.173 -14.71 1 15.25 ? C10 NUT 201 A 1 HETATM 12 C C9 NUT . . . B 2 -25.716 5.849 -14.559 1 13.04 ? C9 NUT 201 A 1 HETATM 13 C C3 NUT . . . B 2 -27.003 5.643 -15.033 1 15.29 ? C3 NUT 201 A 1 HETATM 14 C C2 NUT . . . B 2 -27.636 4.39 -14.872 1 13.86 ? C2 NUT 201 A 1 HETATM 15 C C5 NUT . . . B 2 -25.021 4.742 -13.878 1 12.69 ? C5 NUT 201 A 1 HETATM 16 O O1 NUT . . . B 2 -23.751 4.95 -13.415 1 14.16 ? O1 NUT 201 A 1 HETATM 17 C C6 NUT . . . B 2 -23.077 3.927 -12.64 1 14.2 ? C6 NUT 201 A 1 HETATM 18 C C8 NUT . . . B 2 -22.445 2.9 -13.586 1 17.73 ? C8 NUT 201 A 1 HETATM 19 C C7 NUT . . . B 2 -22.063 4.596 -11.718 1 16.82 ? C7 NUT 201 A 1 HETATM 20 C C4 NUT . . . B 2 -25.678 3.512 -13.732 1 13.78 ? C4 NUT 201 A 1 HETATM 21 C C1 NUT . . . B 2 -26.973 3.348 -14.207 1 14.18 ? C1 NUT 201 A 1 HETATM 22 O O NUT . . . B 2 -27.557 2.127 -14.022 1 15.19 ? O NUT 201 A 1 HETATM 23 C C NUT . . . B 2 -28.863 1.822 -14.54 1 16.25 ? C NUT 201 A 1 HETATM 24 C C18 NUT . . . B 2 -23.33 8.774 -14.74 1 15.9 ? C18 NUT 201 A 1 HETATM 25 C C19 NUT . . . B 2 -22.897 9.233 -13.374 1 13.46 ? C19 NUT 201 A 1 HETATM 26 C C24 NUT . . . B 2 -22.198 10.451 -13.326 1 14.37 ? C24 NUT 201 A 1 HETATM 27 C C23 NUT . . . B 2 -21.867 10.994 -12.087 1 13.16 ? C23 NUT 201 A 1 HETATM 28 C C22 NUT . . . B 2 -22.26 10.321 -10.942 1 13.69 ? C22 NUT 201 A 1 HETATM 29 CL CL1 NUT . . . B 2 -21.928 11.079 -9.376 1 17.12 ? CL1 NUT 201 A 1 HETATM 30 C C21 NUT . . . B 2 -22.988 9.123 -10.942 1 13.6 ? C21 NUT 201 A 1 HETATM 31 C C20 NUT . . . B 2 -23.3 8.579 -12.19 1 13.58 ? C20 NUT 201 A 1 HETATM 32 C C11 NUT . . . B 2 -24.792 9.367 -15.038 1 15.99 ? C11 NUT 201 A 1 HETATM 33 N N NUT . . . B 2 -25.707 8.251 -14.709 1 15.64 ? N NUT 201 A 1 HETATM 34 C C12 NUT . . . B 2 -25.194 10.617 -14.301 1 13.29 ? C12 NUT 201 A 1 HETATM 35 C C17 NUT . . . B 2 -24.98 11.874 -14.865 1 14.98 ? C17 NUT 201 A 1 HETATM 36 C C16 NUT . . . B 2 -25.355 13.035 -14.145 1 14.37 ? C16 NUT 201 A 1 HETATM 37 C C15 NUT . . . B 2 -25.935 12.921 -12.864 1 14.91 ? C15 NUT 201 A 1 HETATM 38 CL CL NUT . . . B 2 -26.417 14.36 -11.915 1 18.16 ? CL NUT 201 A 1 HETATM 39 C C14 NUT . . . B 2 -26.156 11.677 -12.254 1 13.49 ? C14 NUT 201 A 1 HETATM 40 C C13 NUT . . . B 2 -25.791 10.528 -13.019 1 12.86 ? C13 NUT 201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 40 #