data_4HGZ # _model_server_result.job_id jt1NevfjRlXzCfAsznlGjg _model_server_result.datetime_utc '2024-11-05 00:35:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":302}' # _entry.id 4HGZ # _exptl.entry_id 4HGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HGZ _cell.length_a 168.02 _cell.length_b 244.55 _cell.length_c 117.85 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 M N N ? 3 O N N ? 3 R N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id GLY _struct_conn.ptnr1_label_seq_id 219 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id GLY _struct_conn.ptnr1_auth_seq_id 199 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id N _struct_conn.ptnr2_label_atom_id LI _struct_conn.ptnr2_label_comp_id LI _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id LI _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.495 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4HGZ _atom_sites.fract_transf_matrix[1][1] 0.005952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008485 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 301 4 SO4 SO4 . H 2 SO4 A 1 302 6 SO4 SO4 . I 2 SO4 A 1 303 8 SO4 SO4 . J 2 SO4 B 1 301 5 SO4 SO4 . K 3 EDO B 1 302 2 EDO EDO . L 4 LI C 1 301 1 LI LI . M 3 EDO C 1 302 1 EDO EDO . N 4 LI D 1 301 2 LI LI . O 3 EDO D 1 302 4 EDO EDO . P 2 SO4 E 1 301 3 SO4 SO4 . Q 2 SO4 E 1 302 7 SO4 SO4 . R 3 EDO E 1 303 3 EDO EDO . S 2 SO4 F 1 301 1 SO4 SO4 . T 2 SO4 F 1 302 2 SO4 SO4 . U 5 HOH A 1 401 4 HOH HOH . U 5 HOH A 2 402 8 HOH HOH . U 5 HOH A 3 403 16 HOH HOH . U 5 HOH A 4 404 17 HOH HOH . U 5 HOH A 5 405 23 HOH HOH . U 5 HOH A 6 406 25 HOH HOH . U 5 HOH A 7 407 38 HOH HOH . U 5 HOH A 8 408 43 HOH HOH . U 5 HOH A 9 409 44 HOH HOH . U 5 HOH A 10 410 48 HOH HOH . U 5 HOH A 11 411 49 HOH HOH . U 5 HOH A 12 412 50 HOH HOH . U 5 HOH A 13 413 54 HOH HOH . U 5 HOH A 14 414 61 HOH HOH . U 5 HOH A 15 415 76 HOH HOH . U 5 HOH A 16 416 78 HOH HOH . U 5 HOH A 17 417 80 HOH HOH . U 5 HOH A 18 418 95 HOH HOH . U 5 HOH A 19 419 107 HOH HOH . U 5 HOH A 20 420 117 HOH HOH . U 5 HOH A 21 421 122 HOH HOH . U 5 HOH A 22 422 124 HOH HOH . U 5 HOH A 23 423 125 HOH HOH . U 5 HOH A 24 424 128 HOH HOH . U 5 HOH A 25 425 135 HOH HOH . V 5 HOH B 1 401 10 HOH HOH . V 5 HOH B 2 402 11 HOH HOH . V 5 HOH B 3 403 14 HOH HOH . V 5 HOH B 4 404 18 HOH HOH . V 5 HOH B 5 405 19 HOH HOH . V 5 HOH B 6 406 22 HOH HOH . V 5 HOH B 7 407 27 HOH HOH . V 5 HOH B 8 408 33 HOH HOH . V 5 HOH B 9 409 37 HOH HOH . V 5 HOH B 10 410 42 HOH HOH . V 5 HOH B 11 411 55 HOH HOH . V 5 HOH B 12 412 63 HOH HOH . V 5 HOH B 13 413 64 HOH HOH . V 5 HOH B 14 414 66 HOH HOH . V 5 HOH B 15 415 68 HOH HOH . V 5 HOH B 16 416 71 HOH HOH . V 5 HOH B 17 417 92 HOH HOH . V 5 HOH B 18 418 105 HOH HOH . V 5 HOH B 19 419 111 HOH HOH . V 5 HOH B 20 420 114 HOH HOH . W 5 HOH C 1 401 3 HOH HOH . W 5 HOH C 2 402 5 HOH HOH . W 5 HOH C 3 403 6 HOH HOH . W 5 HOH C 4 404 20 HOH HOH . W 5 HOH C 5 405 24 HOH HOH . W 5 HOH C 6 406 29 HOH HOH . W 5 HOH C 7 407 32 HOH HOH . W 5 HOH C 8 408 35 HOH HOH . W 5 HOH C 9 409 41 HOH HOH . W 5 HOH C 10 410 59 HOH HOH . W 5 HOH C 11 411 69 HOH HOH . W 5 HOH C 12 412 70 HOH HOH . W 5 HOH C 13 413 74 HOH HOH . W 5 HOH C 14 414 85 HOH HOH . W 5 HOH C 15 415 88 HOH HOH . W 5 HOH C 16 416 94 HOH HOH . W 5 HOH C 17 417 96 HOH HOH . W 5 HOH C 18 418 101 HOH HOH . W 5 HOH C 19 419 103 HOH HOH . W 5 HOH C 20 420 106 HOH HOH . W 5 HOH C 21 421 109 HOH HOH . W 5 HOH C 22 422 110 HOH HOH . W 5 HOH C 23 423 116 HOH HOH . W 5 HOH C 24 424 118 HOH HOH . W 5 HOH C 25 425 119 HOH HOH . W 5 HOH C 26 426 121 HOH HOH . W 5 HOH C 27 427 136 HOH HOH . X 5 HOH D 1 401 13 HOH HOH . X 5 HOH D 2 402 21 HOH HOH . X 5 HOH D 3 403 28 HOH HOH . X 5 HOH D 4 404 36 HOH HOH . X 5 HOH D 5 405 51 HOH HOH . X 5 HOH D 6 406 62 HOH HOH . X 5 HOH D 7 407 72 HOH HOH . X 5 HOH D 8 408 75 HOH HOH . X 5 HOH D 9 409 83 HOH HOH . X 5 HOH D 10 410 97 HOH HOH . X 5 HOH D 11 411 99 HOH HOH . X 5 HOH D 12 412 108 HOH HOH . X 5 HOH D 13 413 113 HOH HOH . X 5 HOH D 14 414 115 HOH HOH . X 5 HOH D 15 415 120 HOH HOH . X 5 HOH D 16 416 123 HOH HOH . X 5 HOH D 17 417 127 HOH HOH . X 5 HOH D 18 418 130 HOH HOH . Y 5 HOH E 1 401 2 HOH HOH . Y 5 HOH E 2 402 9 HOH HOH . Y 5 HOH E 3 403 30 HOH HOH . Y 5 HOH E 4 404 34 HOH HOH . Y 5 HOH E 5 405 39 HOH HOH . Y 5 HOH E 6 406 45 HOH HOH . Y 5 HOH E 7 407 46 HOH HOH . Y 5 HOH E 8 408 47 HOH HOH . Y 5 HOH E 9 409 57 HOH HOH . Y 5 HOH E 10 410 58 HOH HOH . Y 5 HOH E 11 411 67 HOH HOH . Y 5 HOH E 12 412 73 HOH HOH . Y 5 HOH E 13 413 77 HOH HOH . Y 5 HOH E 14 414 79 HOH HOH . Y 5 HOH E 15 415 81 HOH HOH . Y 5 HOH E 16 416 84 HOH HOH . Y 5 HOH E 17 417 86 HOH HOH . Y 5 HOH E 18 418 90 HOH HOH . Y 5 HOH E 19 419 93 HOH HOH . Y 5 HOH E 20 420 98 HOH HOH . Y 5 HOH E 21 421 100 HOH HOH . Y 5 HOH E 22 422 102 HOH HOH . Y 5 HOH E 23 423 126 HOH HOH . Y 5 HOH E 24 424 132 HOH HOH . Y 5 HOH E 25 425 134 HOH HOH . Z 5 HOH F 1 401 1 HOH HOH . Z 5 HOH F 2 402 7 HOH HOH . Z 5 HOH F 3 403 12 HOH HOH . Z 5 HOH F 4 404 15 HOH HOH . Z 5 HOH F 5 405 26 HOH HOH . Z 5 HOH F 6 406 31 HOH HOH . Z 5 HOH F 7 407 40 HOH HOH . Z 5 HOH F 8 408 52 HOH HOH . Z 5 HOH F 9 409 53 HOH HOH . Z 5 HOH F 10 410 56 HOH HOH . Z 5 HOH F 11 411 60 HOH HOH . Z 5 HOH F 12 412 65 HOH HOH . Z 5 HOH F 13 413 82 HOH HOH . Z 5 HOH F 14 414 87 HOH HOH . Z 5 HOH F 15 415 89 HOH HOH . Z 5 HOH F 16 416 91 HOH HOH . Z 5 HOH F 17 417 104 HOH HOH . Z 5 HOH F 18 418 112 HOH HOH . Z 5 HOH F 19 419 129 HOH HOH . Z 5 HOH F 20 420 131 HOH HOH . Z 5 HOH F 21 421 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . K 3 39.272 -96.649 49.649 1 88.9 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . K 3 39.716 -95.836 50.742 1 34.5 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . K 3 38.091 -97.512 50.098 1 93.42 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . K 3 36.886 -97.124 49.418 1 72.09 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #