data_4HH4 # _model_server_result.job_id uX1bsNAWHs1WjbPKIBhJuw _model_server_result.datetime_utc '2024-10-18 17:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":301}' # _entry.id 4HH4 # _exptl.entry_id 4HH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HH4 _cell.length_a 169.95 _cell.length_b 244 _cell.length_c 118.07 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 M N N ? 2 R N N ? 2 X N N ? 2 BA N N ? 2 JA N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 323 n n N HN1 SAH sing 324 n n N HN2 SAH sing 325 n n CA CB SAH sing 326 n n CA C SAH sing 327 n n CA HA SAH sing 328 n n CB CG SAH sing 329 n n CB HB1 SAH sing 330 n n CB HB2 SAH sing 331 n n CG SD SAH sing 332 n n CG HG1 SAH sing 333 n n CG HG2 SAH sing 334 n n SD C5' SAH sing 335 n n C O SAH doub 336 n n C OXT SAH sing 337 n n OXT HXT SAH sing 338 n n C5' C4' SAH sing 339 n n C5' "H5'1" SAH sing 340 n n C5' "H5'2" SAH sing 341 n n C4' O4' SAH sing 342 n n C4' C3' SAH sing 343 n n C4' H4' SAH sing 344 n n O4' C1' SAH sing 345 n n C3' O3' SAH sing 346 n n C3' C2' SAH sing 347 n n C3' H3' SAH sing 348 n n O3' HO3' SAH sing 349 n n C2' O2' SAH sing 350 n n C2' C1' SAH sing 351 n n C2' H2' SAH sing 352 n n O2' HO2' SAH sing 353 n n C1' N9 SAH sing 354 n n C1' H1' SAH sing 355 n n N9 C8 SAH sing 356 n y N9 C4 SAH sing 357 n y C8 N7 SAH doub 358 n y C8 H8 SAH sing 359 n n N7 C5 SAH sing 360 n y C5 C6 SAH sing 361 n y C5 C4 SAH doub 362 n y C6 N6 SAH sing 363 n n C6 N1 SAH doub 364 n y N6 HN61 SAH sing 365 n n N6 HN62 SAH sing 366 n n N1 C2 SAH sing 367 n y C2 N3 SAH doub 368 n y C2 H2 SAH sing 369 n n N3 C4 SAH sing 370 n y # _atom_sites.entry_id 4HH4 _atom_sites.fract_transf_matrix[1][1] 0.005884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SAH A 1 301 500 SAH SAH . H 3 SO4 A 1 302 5 SO4 SO4 . I 3 SO4 A 1 303 14 SO4 SO4 . J 3 SO4 A 1 304 20 SO4 SO4 . K 4 GOL A 1 305 1 GOL GOL . L 4 GOL A 1 306 6 GOL GOL . M 2 SAH B 1 301 500 SAH SAH . N 3 SO4 B 1 302 7 SO4 SO4 . O 3 SO4 B 1 303 16 SO4 SO4 . P 4 GOL B 1 304 2 GOL GOL . Q 5 EPE B 1 305 1 EPE EPE . R 2 SAH C 1 301 500 SAH SAH . S 3 SO4 C 1 302 3 SO4 SO4 . T 3 SO4 C 1 303 6 SO4 SO4 . U 3 SO4 C 1 304 9 SO4 SO4 . V 3 SO4 C 1 305 15 SO4 SO4 . W 4 GOL C 1 306 3 GOL GOL . X 2 SAH D 1 301 500 SAH SAH . Y 3 SO4 D 1 302 10 SO4 SO4 . Z 3 SO4 D 1 303 19 SO4 SO4 . AA 4 GOL D 1 304 4 GOL GOL . BA 2 SAH E 1 301 500 SAH SAH . CA 3 SO4 E 1 302 1 SO4 SO4 . DA 3 SO4 E 1 303 2 SO4 SO4 . EA 3 SO4 E 1 304 11 SO4 SO4 . FA 3 SO4 E 1 305 12 SO4 SO4 . GA 3 SO4 E 1 306 13 SO4 SO4 . HA 3 SO4 E 1 307 17 SO4 SO4 . IA 4 GOL E 1 308 5 GOL GOL . JA 2 SAH F 1 301 500 SAH SAH . KA 3 SO4 F 1 302 4 SO4 SO4 . LA 3 SO4 F 1 303 8 SO4 SO4 . MA 3 SO4 F 1 304 18 SO4 SO4 . NA 6 HOH A 1 401 3 HOH HOH . NA 6 HOH A 2 402 4 HOH HOH . NA 6 HOH A 3 403 8 HOH HOH . NA 6 HOH A 4 404 29 HOH HOH . NA 6 HOH A 5 405 34 HOH HOH . NA 6 HOH A 6 406 35 HOH HOH . NA 6 HOH A 7 407 48 HOH HOH . NA 6 HOH A 8 408 51 HOH HOH . NA 6 HOH A 9 409 55 HOH HOH . NA 6 HOH A 10 410 58 HOH HOH . NA 6 HOH A 11 411 66 HOH HOH . NA 6 HOH A 12 412 77 HOH HOH . NA 6 HOH A 13 413 78 HOH HOH . NA 6 HOH A 14 414 79 HOH HOH . NA 6 HOH A 15 415 89 HOH HOH . NA 6 HOH A 16 416 90 HOH HOH . NA 6 HOH A 17 417 94 HOH HOH . NA 6 HOH A 18 418 95 HOH HOH . NA 6 HOH A 19 419 96 HOH HOH . NA 6 HOH A 20 420 98 HOH HOH . NA 6 HOH A 21 421 99 HOH HOH . OA 6 HOH B 1 401 6 HOH HOH . OA 6 HOH B 2 402 19 HOH HOH . OA 6 HOH B 3 403 21 HOH HOH . OA 6 HOH B 4 404 23 HOH HOH . OA 6 HOH B 5 405 37 HOH HOH . OA 6 HOH B 6 406 38 HOH HOH . OA 6 HOH B 7 407 39 HOH HOH . OA 6 HOH B 8 408 53 HOH HOH . OA 6 HOH B 9 409 54 HOH HOH . OA 6 HOH B 10 410 67 HOH HOH . OA 6 HOH B 11 411 70 HOH HOH . OA 6 HOH B 12 412 71 HOH HOH . OA 6 HOH B 13 413 72 HOH HOH . OA 6 HOH B 14 414 80 HOH HOH . OA 6 HOH B 15 415 93 HOH HOH . OA 6 HOH B 16 416 103 HOH HOH . PA 6 HOH C 1 401 7 HOH HOH . PA 6 HOH C 2 402 9 HOH HOH . PA 6 HOH C 3 403 11 HOH HOH . PA 6 HOH C 4 404 13 HOH HOH . PA 6 HOH C 5 405 16 HOH HOH . PA 6 HOH C 6 406 18 HOH HOH . PA 6 HOH C 7 407 20 HOH HOH . PA 6 HOH C 8 408 24 HOH HOH . PA 6 HOH C 9 409 25 HOH HOH . PA 6 HOH C 10 410 30 HOH HOH . PA 6 HOH C 11 411 31 HOH HOH . PA 6 HOH C 12 412 36 HOH HOH . PA 6 HOH C 13 413 47 HOH HOH . PA 6 HOH C 14 414 64 HOH HOH . PA 6 HOH C 15 415 65 HOH HOH . PA 6 HOH C 16 416 68 HOH HOH . PA 6 HOH C 17 417 81 HOH HOH . PA 6 HOH C 18 418 82 HOH HOH . PA 6 HOH C 19 419 88 HOH HOH . PA 6 HOH C 20 420 97 HOH HOH . PA 6 HOH C 21 421 104 HOH HOH . PA 6 HOH C 22 422 107 HOH HOH . QA 6 HOH D 1 401 2 HOH HOH . QA 6 HOH D 2 402 5 HOH HOH . QA 6 HOH D 3 403 15 HOH HOH . QA 6 HOH D 4 404 17 HOH HOH . QA 6 HOH D 5 405 22 HOH HOH . QA 6 HOH D 6 406 26 HOH HOH . QA 6 HOH D 7 407 28 HOH HOH . QA 6 HOH D 8 408 40 HOH HOH . QA 6 HOH D 9 409 41 HOH HOH . QA 6 HOH D 10 410 60 HOH HOH . QA 6 HOH D 11 411 61 HOH HOH . QA 6 HOH D 12 412 69 HOH HOH . QA 6 HOH D 13 413 83 HOH HOH . QA 6 HOH D 14 414 84 HOH HOH . QA 6 HOH D 15 415 92 HOH HOH . RA 6 HOH E 1 401 1 HOH HOH . RA 6 HOH E 2 402 10 HOH HOH . RA 6 HOH E 3 403 12 HOH HOH . RA 6 HOH E 4 404 27 HOH HOH . RA 6 HOH E 5 405 32 HOH HOH . RA 6 HOH E 6 406 33 HOH HOH . RA 6 HOH E 7 407 43 HOH HOH . RA 6 HOH E 8 408 45 HOH HOH . RA 6 HOH E 9 409 46 HOH HOH . RA 6 HOH E 10 410 49 HOH HOH . RA 6 HOH E 11 411 50 HOH HOH . RA 6 HOH E 12 412 52 HOH HOH . RA 6 HOH E 13 413 56 HOH HOH . RA 6 HOH E 14 414 57 HOH HOH . RA 6 HOH E 15 415 62 HOH HOH . RA 6 HOH E 16 416 86 HOH HOH . RA 6 HOH E 17 417 87 HOH HOH . RA 6 HOH E 18 418 91 HOH HOH . RA 6 HOH E 19 419 101 HOH HOH . RA 6 HOH E 20 420 105 HOH HOH . RA 6 HOH E 21 421 106 HOH HOH . SA 6 HOH F 1 401 14 HOH HOH . SA 6 HOH F 2 402 42 HOH HOH . SA 6 HOH F 3 403 44 HOH HOH . SA 6 HOH F 4 404 59 HOH HOH . SA 6 HOH F 5 405 63 HOH HOH . SA 6 HOH F 6 406 73 HOH HOH . SA 6 HOH F 7 407 74 HOH HOH . SA 6 HOH F 8 408 75 HOH HOH . SA 6 HOH F 9 409 76 HOH HOH . SA 6 HOH F 10 410 85 HOH HOH . SA 6 HOH F 11 411 100 HOH HOH . SA 6 HOH F 12 412 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . X 2 -18.717 -52.083 -20.534 1 51.22 ? N SAH 301 D 1 HETATM 2 C CA SAH . . . X 2 -18.335 -52.944 -21.653 1 53.15 ? CA SAH 301 D 1 HETATM 3 C CB SAH . . . X 2 -16.955 -53.557 -21.415 1 53.41 ? CB SAH 301 D 1 HETATM 4 C CG SAH . . . X 2 -16.806 -54.123 -19.999 1 51.44 ? CG SAH 301 D 1 HETATM 5 S SD SAH . . . X 2 -15.213 -54.884 -19.831 1 54.21 ? SD SAH 301 D 1 HETATM 6 C C SAH . . . X 2 -19.359 -54.032 -21.781 1 53.08 ? C SAH 301 D 1 HETATM 7 O O SAH . . . X 2 -19.418 -54.81 -22.698 1 54.49 ? O SAH 301 D 1 HETATM 8 O OXT SAH . . . X 2 -20.229 -54.239 -20.974 1 51.82 ? OXT SAH 301 D 1 HETATM 9 C C5' SAH . . . X 2 -14.364 -53.768 -18.752 1 47.34 ? C5' SAH 301 D 1 HETATM 10 C C4' SAH . . . X 2 -13.778 -52.657 -19.622 1 48.29 ? C4' SAH 301 D 1 HETATM 11 O O4' SAH . . . X 2 -13.183 -51.644 -18.809 1 45.66 ? O4' SAH 301 D 1 HETATM 12 C C3' SAH . . . X 2 -12.685 -53.181 -20.542 1 48.7 ? C3' SAH 301 D 1 HETATM 13 O O3' SAH . . . X 2 -12.887 -52.56 -21.816 1 46.76 ? O3' SAH 301 D 1 HETATM 14 C C2' SAH . . . X 2 -11.406 -52.726 -19.859 1 49.08 ? C2' SAH 301 D 1 HETATM 15 O O2' SAH . . . X 2 -10.322 -52.579 -20.773 1 52.85 ? O2' SAH 301 D 1 HETATM 16 C C1' SAH . . . X 2 -11.842 -51.407 -19.251 1 47.86 ? C1' SAH 301 D 1 HETATM 17 N N9 SAH . . . X 2 -11.053 -50.935 -18.085 1 49.07 ? N9 SAH 301 D 1 HETATM 18 C C8 SAH . . . X 2 -10.538 -51.69 -17.105 1 49.96 ? C8 SAH 301 D 1 HETATM 19 N N7 SAH . . . X 2 -9.891 -50.913 -16.194 1 52.27 ? N7 SAH 301 D 1 HETATM 20 C C5 SAH . . . X 2 -10.007 -49.638 -16.576 1 50.11 ? C5 SAH 301 D 1 HETATM 21 C C6 SAH . . . X 2 -9.562 -48.332 -16.05 1 52.67 ? C6 SAH 301 D 1 HETATM 22 N N6 SAH . . . X 2 -8.849 -48.273 -14.898 1 58.7 ? N6 SAH 301 D 1 HETATM 23 N N1 SAH . . . X 2 -9.881 -47.216 -16.746 1 53.09 ? N1 SAH 301 D 1 HETATM 24 C C2 SAH . . . X 2 -10.586 -47.3 -17.894 1 52.77 ? C2 SAH 301 D 1 HETATM 25 N N3 SAH . . . X 2 -11.027 -48.457 -18.426 1 49.58 ? N3 SAH 301 D 1 HETATM 26 C C4 SAH . . . X 2 -10.776 -49.647 -17.819 1 49.84 ? C4 SAH 301 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #