data_4HH4 # _model_server_result.job_id irrvUrcU2PFgoVoJYNSf8g _model_server_result.datetime_utc '2024-10-18 17:28:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":305}' # _entry.id 4HH4 # _exptl.entry_id 4HH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HH4 _cell.length_a 169.95 _cell.length_b 244 _cell.length_c 118.07 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 4HH4 _atom_sites.fract_transf_matrix[1][1] 0.005884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004098 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SAH A 1 301 500 SAH SAH . H 3 SO4 A 1 302 5 SO4 SO4 . I 3 SO4 A 1 303 14 SO4 SO4 . J 3 SO4 A 1 304 20 SO4 SO4 . K 4 GOL A 1 305 1 GOL GOL . L 4 GOL A 1 306 6 GOL GOL . M 2 SAH B 1 301 500 SAH SAH . N 3 SO4 B 1 302 7 SO4 SO4 . O 3 SO4 B 1 303 16 SO4 SO4 . P 4 GOL B 1 304 2 GOL GOL . Q 5 EPE B 1 305 1 EPE EPE . R 2 SAH C 1 301 500 SAH SAH . S 3 SO4 C 1 302 3 SO4 SO4 . T 3 SO4 C 1 303 6 SO4 SO4 . U 3 SO4 C 1 304 9 SO4 SO4 . V 3 SO4 C 1 305 15 SO4 SO4 . W 4 GOL C 1 306 3 GOL GOL . X 2 SAH D 1 301 500 SAH SAH . Y 3 SO4 D 1 302 10 SO4 SO4 . Z 3 SO4 D 1 303 19 SO4 SO4 . AA 4 GOL D 1 304 4 GOL GOL . BA 2 SAH E 1 301 500 SAH SAH . CA 3 SO4 E 1 302 1 SO4 SO4 . DA 3 SO4 E 1 303 2 SO4 SO4 . EA 3 SO4 E 1 304 11 SO4 SO4 . FA 3 SO4 E 1 305 12 SO4 SO4 . GA 3 SO4 E 1 306 13 SO4 SO4 . HA 3 SO4 E 1 307 17 SO4 SO4 . IA 4 GOL E 1 308 5 GOL GOL . JA 2 SAH F 1 301 500 SAH SAH . KA 3 SO4 F 1 302 4 SO4 SO4 . LA 3 SO4 F 1 303 8 SO4 SO4 . MA 3 SO4 F 1 304 18 SO4 SO4 . NA 6 HOH A 1 401 3 HOH HOH . NA 6 HOH A 2 402 4 HOH HOH . NA 6 HOH A 3 403 8 HOH HOH . NA 6 HOH A 4 404 29 HOH HOH . NA 6 HOH A 5 405 34 HOH HOH . NA 6 HOH A 6 406 35 HOH HOH . NA 6 HOH A 7 407 48 HOH HOH . NA 6 HOH A 8 408 51 HOH HOH . NA 6 HOH A 9 409 55 HOH HOH . NA 6 HOH A 10 410 58 HOH HOH . NA 6 HOH A 11 411 66 HOH HOH . NA 6 HOH A 12 412 77 HOH HOH . NA 6 HOH A 13 413 78 HOH HOH . NA 6 HOH A 14 414 79 HOH HOH . NA 6 HOH A 15 415 89 HOH HOH . NA 6 HOH A 16 416 90 HOH HOH . NA 6 HOH A 17 417 94 HOH HOH . NA 6 HOH A 18 418 95 HOH HOH . NA 6 HOH A 19 419 96 HOH HOH . NA 6 HOH A 20 420 98 HOH HOH . NA 6 HOH A 21 421 99 HOH HOH . OA 6 HOH B 1 401 6 HOH HOH . OA 6 HOH B 2 402 19 HOH HOH . OA 6 HOH B 3 403 21 HOH HOH . OA 6 HOH B 4 404 23 HOH HOH . OA 6 HOH B 5 405 37 HOH HOH . OA 6 HOH B 6 406 38 HOH HOH . OA 6 HOH B 7 407 39 HOH HOH . OA 6 HOH B 8 408 53 HOH HOH . OA 6 HOH B 9 409 54 HOH HOH . OA 6 HOH B 10 410 67 HOH HOH . OA 6 HOH B 11 411 70 HOH HOH . OA 6 HOH B 12 412 71 HOH HOH . OA 6 HOH B 13 413 72 HOH HOH . OA 6 HOH B 14 414 80 HOH HOH . OA 6 HOH B 15 415 93 HOH HOH . OA 6 HOH B 16 416 103 HOH HOH . PA 6 HOH C 1 401 7 HOH HOH . PA 6 HOH C 2 402 9 HOH HOH . PA 6 HOH C 3 403 11 HOH HOH . PA 6 HOH C 4 404 13 HOH HOH . PA 6 HOH C 5 405 16 HOH HOH . PA 6 HOH C 6 406 18 HOH HOH . PA 6 HOH C 7 407 20 HOH HOH . PA 6 HOH C 8 408 24 HOH HOH . PA 6 HOH C 9 409 25 HOH HOH . PA 6 HOH C 10 410 30 HOH HOH . PA 6 HOH C 11 411 31 HOH HOH . PA 6 HOH C 12 412 36 HOH HOH . PA 6 HOH C 13 413 47 HOH HOH . PA 6 HOH C 14 414 64 HOH HOH . PA 6 HOH C 15 415 65 HOH HOH . PA 6 HOH C 16 416 68 HOH HOH . PA 6 HOH C 17 417 81 HOH HOH . PA 6 HOH C 18 418 82 HOH HOH . PA 6 HOH C 19 419 88 HOH HOH . PA 6 HOH C 20 420 97 HOH HOH . PA 6 HOH C 21 421 104 HOH HOH . PA 6 HOH C 22 422 107 HOH HOH . QA 6 HOH D 1 401 2 HOH HOH . QA 6 HOH D 2 402 5 HOH HOH . QA 6 HOH D 3 403 15 HOH HOH . QA 6 HOH D 4 404 17 HOH HOH . QA 6 HOH D 5 405 22 HOH HOH . QA 6 HOH D 6 406 26 HOH HOH . QA 6 HOH D 7 407 28 HOH HOH . QA 6 HOH D 8 408 40 HOH HOH . QA 6 HOH D 9 409 41 HOH HOH . QA 6 HOH D 10 410 60 HOH HOH . QA 6 HOH D 11 411 61 HOH HOH . QA 6 HOH D 12 412 69 HOH HOH . QA 6 HOH D 13 413 83 HOH HOH . QA 6 HOH D 14 414 84 HOH HOH . QA 6 HOH D 15 415 92 HOH HOH . RA 6 HOH E 1 401 1 HOH HOH . RA 6 HOH E 2 402 10 HOH HOH . RA 6 HOH E 3 403 12 HOH HOH . RA 6 HOH E 4 404 27 HOH HOH . RA 6 HOH E 5 405 32 HOH HOH . RA 6 HOH E 6 406 33 HOH HOH . RA 6 HOH E 7 407 43 HOH HOH . RA 6 HOH E 8 408 45 HOH HOH . RA 6 HOH E 9 409 46 HOH HOH . RA 6 HOH E 10 410 49 HOH HOH . RA 6 HOH E 11 411 50 HOH HOH . RA 6 HOH E 12 412 52 HOH HOH . RA 6 HOH E 13 413 56 HOH HOH . RA 6 HOH E 14 414 57 HOH HOH . RA 6 HOH E 15 415 62 HOH HOH . RA 6 HOH E 16 416 86 HOH HOH . RA 6 HOH E 17 417 87 HOH HOH . RA 6 HOH E 18 418 91 HOH HOH . RA 6 HOH E 19 419 101 HOH HOH . RA 6 HOH E 20 420 105 HOH HOH . RA 6 HOH E 21 421 106 HOH HOH . SA 6 HOH F 1 401 14 HOH HOH . SA 6 HOH F 2 402 42 HOH HOH . SA 6 HOH F 3 403 44 HOH HOH . SA 6 HOH F 4 404 59 HOH HOH . SA 6 HOH F 5 405 63 HOH HOH . SA 6 HOH F 6 406 73 HOH HOH . SA 6 HOH F 7 407 74 HOH HOH . SA 6 HOH F 8 408 75 HOH HOH . SA 6 HOH F 9 409 76 HOH HOH . SA 6 HOH F 10 410 85 HOH HOH . SA 6 HOH F 11 411 100 HOH HOH . SA 6 HOH F 12 412 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . Q 5 -37.974 -63.466 -11.067 1 101.8 ? N1 EPE 305 B 1 HETATM 2 C C2 EPE . . . Q 5 -37.211 -63.691 -12.315 1 101.07 ? C2 EPE 305 B 1 HETATM 3 C C3 EPE . . . Q 5 -38.062 -63.692 -13.61 1 101.61 ? C3 EPE 305 B 1 HETATM 4 N N4 EPE . . . Q 5 -39.339 -62.968 -13.632 1 97.57 ? N4 EPE 305 B 1 HETATM 5 C C5 EPE . . . Q 5 -39.997 -62.806 -12.361 1 100.31 ? C5 EPE 305 B 1 HETATM 6 C C6 EPE . . . Q 5 -39.39 -63.759 -11.327 1 102.56 ? C6 EPE 305 B 1 HETATM 7 C C7 EPE . . . Q 5 -40.206 -63.028 -14.799 1 90.61 ? C7 EPE 305 B 1 HETATM 8 C C8 EPE . . . Q 5 -40.039 -61.851 -15.745 1 86.36 ? C8 EPE 305 B 1 HETATM 9 O O8 EPE . . . Q 5 -39.719 -62.367 -17.014 1 81.65 ? O8 EPE 305 B 1 HETATM 10 C C9 EPE . . . Q 5 -37.798 -62.089 -10.53 1 105.95 ? C9 EPE 305 B 1 HETATM 11 C C10 EPE . . . Q 5 -38.825 -61.706 -9.447 1 111.66 ? C10 EPE 305 B 1 HETATM 12 S S EPE . . . Q 5 -39.93 -60.278 -9.776 1 115.18 ? S EPE 305 B 1 HETATM 13 O O1S EPE . . . Q 5 -41.109 -60.709 -10.529 1 114.77 ? O1S EPE 305 B 1 HETATM 14 O O2S EPE . . . Q 5 -39.194 -59.31 -10.586 1 115.83 ? O2S EPE 305 B 1 HETATM 15 O O3S EPE . . . Q 5 -40.399 -59.637 -8.536 1 113.16 ? O3S EPE 305 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #