data_4HHD # _model_server_result.job_id 6GeFrbXiin0LKy14PVkPwA _model_server_result.datetime_utc '2024-12-22 06:11:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 4HHD # _exptl.entry_id 4HHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HHD _cell.length_a 63.382 _cell.length_b 63.382 _cell.length_c 171.318 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 22 A GLU 471 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc2 A OD2 ASP 45 A ASP 494 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.135 ? metalc ? metalc3 A OD1 ASP 45 A ASP 494 1_555 D NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.166 ? metalc ? metalc4 D NA NA . A NA 702 1_555 B OD2 ASP 45 B ASP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc5 D NA NA . A NA 702 1_555 B OD1 ASP 45 B ASP 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc6 D NA NA . A NA 702 1_555 G O HOH . B HOH 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4HHD _atom_sites.fract_transf_matrix[1][1] 0.015777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 701 620 FMN FMN . D 3 NA A 1 702 1 NA NA . E 2 FMN B 1 701 620 FMN FMN . F 4 HOH A 1 801 2 HOH HOH . F 4 HOH A 2 802 4 HOH HOH . F 4 HOH A 3 803 7 HOH HOH . F 4 HOH A 4 804 8 HOH HOH . F 4 HOH A 5 805 10 HOH HOH . F 4 HOH A 6 806 13 HOH HOH . F 4 HOH A 7 807 15 HOH HOH . F 4 HOH A 8 808 17 HOH HOH . F 4 HOH A 9 809 21 HOH HOH . F 4 HOH A 10 810 23 HOH HOH . F 4 HOH A 11 811 25 HOH HOH . F 4 HOH A 12 812 26 HOH HOH . G 4 HOH B 1 801 3 HOH HOH . G 4 HOH B 2 802 5 HOH HOH . G 4 HOH B 3 803 6 HOH HOH . G 4 HOH B 4 804 9 HOH HOH . G 4 HOH B 5 805 11 HOH HOH . G 4 HOH B 6 806 12 HOH HOH . G 4 HOH B 7 807 14 HOH HOH . G 4 HOH B 8 808 16 HOH HOH . G 4 HOH B 9 809 18 HOH HOH . G 4 HOH B 10 810 19 HOH HOH . G 4 HOH B 11 811 20 HOH HOH . G 4 HOH B 12 812 22 HOH HOH . G 4 HOH B 13 813 24 HOH HOH . G 4 HOH B 14 814 27 HOH HOH . G 4 HOH B 15 815 28 HOH HOH . G 4 HOH B 16 816 29 HOH HOH . G 4 HOH B 17 817 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 11.932 -8.219 14.268 1 38.18 ? N1 FMN 701 A 1 HETATM 2 C C2 FMN . . . C 2 11.991 -8.472 15.606 1 40.45 ? C2 FMN 701 A 1 HETATM 3 O O2 FMN . . . C 2 11.277 -9.478 16.185 1 41.56 ? O2 FMN 701 A 1 HETATM 4 N N3 FMN . . . C 2 12.774 -7.727 16.41 1 42.54 ? N3 FMN 701 A 1 HETATM 5 C C4 FMN . . . C 2 13.505 -6.723 15.897 1 41.79 ? C4 FMN 701 A 1 HETATM 6 O O4 FMN . . . C 2 14.294 -5.98 16.707 1 44.13 ? O4 FMN 701 A 1 HETATM 7 C C4A FMN . . . C 2 13.466 -6.455 14.54 1 39.46 ? C4A FMN 701 A 1 HETATM 8 N N5 FMN . . . C 2 14.204 -5.442 14.062 1 39.32 ? N5 FMN 701 A 1 HETATM 9 C C5A FMN . . . C 2 14.188 -5.134 12.756 1 41.58 ? C5A FMN 701 A 1 HETATM 10 C C6 FMN . . . C 2 14.975 -4.081 12.314 1 44.07 ? C6 FMN 701 A 1 HETATM 11 C C7 FMN . . . C 2 14.993 -3.711 10.976 1 46.42 ? C7 FMN 701 A 1 HETATM 12 C C7M FMN . . . C 2 15.854 -2.56 10.51 1 47.2 ? C7M FMN 701 A 1 HETATM 13 C C8 FMN . . . C 2 14.214 -4.422 10.08 1 48.03 ? C8 FMN 701 A 1 HETATM 14 C C8M FMN . . . C 2 14.224 -4.048 8.617 1 51.44 ? C8M FMN 701 A 1 HETATM 15 C C9 FMN . . . C 2 13.424 -5.485 10.526 1 45 ? C9 FMN 701 A 1 HETATM 16 C C9A FMN . . . C 2 13.396 -5.854 11.873 1 42.25 ? C9A FMN 701 A 1 HETATM 17 N N10 FMN . . . C 2 12.623 -6.944 12.384 1 42.62 ? N10 FMN 701 A 1 HETATM 18 C C10 FMN . . . C 2 12.659 -7.218 13.709 1 38.99 ? C10 FMN 701 A 1 HETATM 19 C C1' FMN . . . C 2 11.729 -7.726 11.513 1 43.76 ? C1' FMN 701 A 1 HETATM 20 C C2' FMN . . . C 2 12.346 -8.905 10.769 1 44.04 ? C2' FMN 701 A 1 HETATM 21 O O2' FMN . . . C 2 13.611 -8.544 10.217 1 45.5 ? O2' FMN 701 A 1 HETATM 22 C C3' FMN . . . C 2 11.404 -9.384 9.656 1 48.03 ? C3' FMN 701 A 1 HETATM 23 O O3' FMN . . . C 2 11.016 -8.268 8.827 1 50.95 ? O3' FMN 701 A 1 HETATM 24 C C4' FMN . . . C 2 10.17 -10.108 10.223 1 49.15 ? C4' FMN 701 A 1 HETATM 25 O O4' FMN . . . C 2 10.549 -11.426 10.619 1 48.46 ? O4' FMN 701 A 1 HETATM 26 C C5' FMN . . . C 2 9.005 -10.218 9.238 1 56.29 ? C5' FMN 701 A 1 HETATM 27 O O5' FMN . . . C 2 9.417 -10.854 8.028 1 58.03 ? O5' FMN 701 A 1 HETATM 28 P P FMN . . . C 2 9.164 -12.419 7.766 1 58.1 ? P FMN 701 A 1 HETATM 29 O O1P FMN . . . C 2 10.291 -12.758 6.824 1 59.72 ? O1P FMN 701 A 1 HETATM 30 O O2P FMN . . . C 2 9.287 -13.133 9.096 1 53.82 ? O2P FMN 701 A 1 HETATM 31 O O3P FMN . . . C 2 7.79 -12.468 7.149 1 68.27 ? O3P FMN 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #