data_4HHZ # _model_server_result.job_id jMzyzHnPErIYS0G5ixhGAQ _model_server_result.datetime_utc '2024-11-29 03:29:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 4HHZ # _exptl.entry_id 4HHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-1-[4-(4-fluorophenyl)-3,6-dihydropyridin-1(2H)-yl]-1-oxopropan-2-yl}-2-[(9aR)-7-oxo-2,3,7,8,9,9a-hexahydro-1H-benzo[de][1,7]naphthyridin-1-yl]acetamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HHZ _cell.length_a 103.02 _cell.length_b 107.26 _cell.length_c 142.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,I,N 1 1 D,J,K,O 2 1 A,E,F,L 3 1 B,G,H,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 184 1_555 D SG CYS 189 D CYS 184 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 189 B CYS 184 1_555 C SG CYS 189 C CYS 184 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C27 H29 F N4 O3' _chem_comp.formula_weight 476.543 _chem_comp.id 15S _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-1-[4-(4-fluorophenyl)-3,6-dihydropyridin-1(2H)-yl]-1-oxopropan-2-yl}-2-[(9aR)-7-oxo-2,3,7,8,9,9a-hexahydro-1H-benzo[de][1,7]naphthyridin-1-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAM 15S doub 1 n y CAK CBA 15S sing 2 n y FAE CBA 15S sing 3 n n CAM CBB 15S sing 4 n y CBA CAJ 15S doub 5 n y CBB CAY 15S sing 6 n n CBB CAL 15S doub 7 n y CAJ CAL 15S sing 8 n y CAY CAO 15S doub 9 n n CAY CAF 15S sing 10 n n CAO CAQ 15S sing 11 n n CAF CAN 15S sing 12 n n CAQ NBH 15S sing 13 n n OAB CAW 15S doub 14 n n CAN NBH 15S sing 15 n n NBH C 15S sing 16 n n O C 15S doub 17 n n C CA 15S sing 18 n n CAW CAT 15S sing 19 n n CAW N 15S sing 20 n n CA N 15S sing 21 n n CA CB 15S sing 22 n n CAT NBI 15S sing 23 n n CAS NAU 15S sing 24 n n CAS CBG 15S sing 25 n n NAU CAX 15S sing 26 n n NBI CBG 15S sing 27 n n NBI CAR 15S sing 28 n n CBG CBE 15S sing 29 n n CAX OAC 15S doub 30 n n CAX CBD 15S sing 31 n n CAR CAP 15S sing 32 n n CBE CBD 15S doub 33 n y CBE CBC 15S sing 34 n y CBD CAI 15S sing 35 n y CAP CBC 15S sing 36 n n CBC CAH 15S doub 37 n y CAI CAG 15S doub 38 n y CAH CAG 15S sing 39 n y NAU H3 15S sing 40 n n CAS H5 15S sing 41 n n CAS H6 15S sing 42 n n CBG H7 15S sing 43 n n CAI H8 15S sing 44 n n CAG H9 15S sing 45 n n CAH H10 15S sing 46 n n CAP H11 15S sing 47 n n CAP H12 15S sing 48 n n CAR H13 15S sing 49 n n CAR H14 15S sing 50 n n CAT H16 15S sing 51 n n CAT H17 15S sing 52 n n N H18 15S sing 53 n n CA H19 15S sing 54 n n CB H20 15S sing 55 n n CB H21 15S sing 56 n n CB H22 15S sing 57 n n CAQ H23 15S sing 58 n n CAQ H24 15S sing 59 n n CAO H25 15S sing 60 n n CAN H27 15S sing 61 n n CAN H28 15S sing 62 n n CAF H29 15S sing 63 n n CAF H30 15S sing 64 n n CAL H32 15S sing 65 n n CAJ H33 15S sing 66 n n CAK H34 15S sing 67 n n CAM H35 15S sing 68 n n # _atom_sites.entry_id 4HHZ _atom_sites.fract_transf_matrix[1][1] 0.009707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 15S A 1 401 401 15S 15S . F 3 SO4 A 1 402 402 SO4 SO4 . G 2 15S B 1 401 401 15S 15S . H 3 SO4 B 1 402 402 SO4 SO4 . I 2 15S C 1 401 401 15S 15S . J 2 15S D 1 401 401 15S 15S . K 3 SO4 D 1 402 402 SO4 SO4 . L 4 HOH A 1 501 501 HOH HOH . L 4 HOH A 2 502 502 HOH HOH . L 4 HOH A 3 503 503 HOH HOH . L 4 HOH A 4 504 504 HOH HOH . L 4 HOH A 5 505 505 HOH HOH . L 4 HOH A 6 506 506 HOH HOH . M 4 HOH B 1 501 501 HOH HOH . M 4 HOH B 2 502 502 HOH HOH . M 4 HOH B 3 503 503 HOH HOH . M 4 HOH B 4 504 504 HOH HOH . M 4 HOH B 5 505 505 HOH HOH . M 4 HOH B 6 506 506 HOH HOH . M 4 HOH B 7 507 507 HOH HOH . M 4 HOH B 8 508 508 HOH HOH . M 4 HOH B 9 509 509 HOH HOH . N 4 HOH C 1 501 501 HOH HOH . N 4 HOH C 2 502 502 HOH HOH . N 4 HOH C 3 503 503 HOH HOH . N 4 HOH C 4 504 504 HOH HOH . N 4 HOH C 5 505 505 HOH HOH . N 4 HOH C 6 506 506 HOH HOH . N 4 HOH C 7 507 507 HOH HOH . O 4 HOH D 1 501 501 HOH HOH . O 4 HOH D 2 502 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 15S . . . I 2 -34.994 53.57 -63.393 1 8.28 ? OAC 15S 401 C 1 HETATM 2 C CAX 15S . . . I 2 -35.442 53.496 -64.659 1 6.17 ? CAX 15S 401 C 1 HETATM 3 N NAU 15S . . . I 2 -35.598 52.018 -65.017 1 6.42 ? NAU 15S 401 C 1 HETATM 4 C CAS 15S . . . I 2 -36.278 51.85 -66.298 1 9.56 ? CAS 15S 401 C 1 HETATM 5 C CBG 15S . . . I 2 -37.696 52.487 -66.244 1 12.64 ? CBG 15S 401 C 1 HETATM 6 C CBE 15S . . . I 2 -37.711 53.911 -65.701 1 7.77 ? CBE 15S 401 C 1 HETATM 7 C CBD 15S . . . I 2 -36.649 54.357 -64.925 1 5.91 ? CBD 15S 401 C 1 HETATM 8 C CAI 15S . . . I 2 -36.697 55.742 -64.402 1 8.66 ? CAI 15S 401 C 1 HETATM 9 C CAG 15S . . . I 2 -37.786 56.562 -64.659 1 7.59 ? CAG 15S 401 C 1 HETATM 10 C CAH 15S . . . I 2 -38.868 56.088 -65.427 1 8.03 ? CAH 15S 401 C 1 HETATM 11 C CBC 15S . . . I 2 -38.805 54.711 -65.95 1 10.11 ? CBC 15S 401 C 1 HETATM 12 C CAP 15S . . . I 2 -39.936 54.205 -66.756 1 10.96 ? CAP 15S 401 C 1 HETATM 13 C CAR 15S . . . I 2 -39.517 53.321 -67.859 1 11.47 ? CAR 15S 401 C 1 HETATM 14 N NBI 15S . . . I 2 -38.582 52.251 -67.491 1 15.91 ? NBI 15S 401 C 1 HETATM 15 C CAT 15S . . . I 2 -39.083 50.936 -67.744 1 18.15 ? CAT 15S 401 C 1 HETATM 16 C CAW 15S . . . I 2 -38.822 50.378 -69.131 1 28.5 ? CAW 15S 401 C 1 HETATM 17 O OAB 15S . . . I 2 -38.827 49.173 -69.327 1 35.15 ? OAB 15S 401 C 1 HETATM 18 N N 15S . . . I 2 -38.575 51.337 -70.185 1 39.8 ? N 15S 401 C 1 HETATM 19 C CA 15S . . . I 2 -38.367 50.946 -71.532 1 46.29 ? CA 15S 401 C 1 HETATM 20 C CB 15S . . . I 2 -39.037 51.922 -72.339 1 49.12 ? CB 15S 401 C 1 HETATM 21 C C 15S . . . I 2 -36.884 51.011 -71.915 1 39.22 ? C 15S 401 C 1 HETATM 22 O O 15S . . . I 2 -36.401 52.079 -71.962 1 44.04 ? O 15S 401 C 1 HETATM 23 N NBH 15S . . . I 2 -36.116 49.808 -72.255 1 45.76 ? NBH 15S 401 C 1 HETATM 24 C CAQ 15S . . . I 2 -34.69 49.926 -72.635 1 48.06 ? CAQ 15S 401 C 1 HETATM 25 C CAO 15S . . . I 2 -34.245 48.998 -73.707 1 31.67 ? CAO 15S 401 C 1 HETATM 26 C CAN 15S . . . I 2 -36.654 48.479 -72.226 1 48.63 ? CAN 15S 401 C 1 HETATM 27 C CAF 15S . . . I 2 -36.185 47.61 -73.355 1 48.62 ? CAF 15S 401 C 1 HETATM 28 C CAY 15S . . . I 2 -35.411 48.398 -74.368 1 37.24 ? CAY 15S 401 C 1 HETATM 29 C CBB 15S . . . I 2 -35.038 47.639 -75.666 1 40.28 ? CBB 15S 401 C 1 HETATM 30 C CAL 15S . . . I 2 -33.814 47.88 -76.336 1 31.34 ? CAL 15S 401 C 1 HETATM 31 C CAJ 15S . . . I 2 -33.505 47.212 -77.504 1 37.66 ? CAJ 15S 401 C 1 HETATM 32 C CBA 15S . . . I 2 -34.404 46.287 -78.023 1 44.88 ? CBA 15S 401 C 1 HETATM 33 F FAE 15S . . . I 2 -34.13 45.654 -79.121 1 46.98 ? FAE 15S 401 C 1 HETATM 34 C CAK 15S . . . I 2 -35.602 46.057 -77.382 1 42.75 ? CAK 15S 401 C 1 HETATM 35 C CAM 15S . . . I 2 -35.916 46.75 -76.19 1 40.22 ? CAM 15S 401 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #