data_4HHZ # _model_server_result.job_id Cbnu788eAyGFnXfjpZzCRQ _model_server_result.datetime_utc '2024-11-25 12:46:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":401}' # _entry.id 4HHZ # _exptl.entry_id 4HHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 476.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-1-[4-(4-fluorophenyl)-3,6-dihydropyridin-1(2H)-yl]-1-oxopropan-2-yl}-2-[(9aR)-7-oxo-2,3,7,8,9,9a-hexahydro-1H-benzo[de][1,7]naphthyridin-1-yl]acetamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HHZ _cell.length_a 103.02 _cell.length_b 107.26 _cell.length_c 142.21 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,I,N 1 1 D,J,K,O 2 1 A,E,F,L 3 1 B,G,H,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 184 1_555 D SG CYS 189 D CYS 184 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 B SG CYS 189 B CYS 184 1_555 C SG CYS 189 C CYS 184 4_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C27 H29 F N4 O3' _chem_comp.formula_weight 476.543 _chem_comp.id 15S _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-1-[4-(4-fluorophenyl)-3,6-dihydropyridin-1(2H)-yl]-1-oxopropan-2-yl}-2-[(9aR)-7-oxo-2,3,7,8,9,9a-hexahydro-1H-benzo[de][1,7]naphthyridin-1-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAK CAM 15S doub 1 n y CAK CBA 15S sing 2 n y FAE CBA 15S sing 3 n n CAM CBB 15S sing 4 n y CBA CAJ 15S doub 5 n y CBB CAY 15S sing 6 n n CBB CAL 15S doub 7 n y CAJ CAL 15S sing 8 n y CAY CAO 15S doub 9 n n CAY CAF 15S sing 10 n n CAO CAQ 15S sing 11 n n CAF CAN 15S sing 12 n n CAQ NBH 15S sing 13 n n OAB CAW 15S doub 14 n n CAN NBH 15S sing 15 n n NBH C 15S sing 16 n n O C 15S doub 17 n n C CA 15S sing 18 n n CAW CAT 15S sing 19 n n CAW N 15S sing 20 n n CA N 15S sing 21 n n CA CB 15S sing 22 n n CAT NBI 15S sing 23 n n CAS NAU 15S sing 24 n n CAS CBG 15S sing 25 n n NAU CAX 15S sing 26 n n NBI CBG 15S sing 27 n n NBI CAR 15S sing 28 n n CBG CBE 15S sing 29 n n CAX OAC 15S doub 30 n n CAX CBD 15S sing 31 n n CAR CAP 15S sing 32 n n CBE CBD 15S doub 33 n y CBE CBC 15S sing 34 n y CBD CAI 15S sing 35 n y CAP CBC 15S sing 36 n n CBC CAH 15S doub 37 n y CAI CAG 15S doub 38 n y CAH CAG 15S sing 39 n y NAU H3 15S sing 40 n n CAS H5 15S sing 41 n n CAS H6 15S sing 42 n n CBG H7 15S sing 43 n n CAI H8 15S sing 44 n n CAG H9 15S sing 45 n n CAH H10 15S sing 46 n n CAP H11 15S sing 47 n n CAP H12 15S sing 48 n n CAR H13 15S sing 49 n n CAR H14 15S sing 50 n n CAT H16 15S sing 51 n n CAT H17 15S sing 52 n n N H18 15S sing 53 n n CA H19 15S sing 54 n n CB H20 15S sing 55 n n CB H21 15S sing 56 n n CB H22 15S sing 57 n n CAQ H23 15S sing 58 n n CAQ H24 15S sing 59 n n CAO H25 15S sing 60 n n CAN H27 15S sing 61 n n CAN H28 15S sing 62 n n CAF H29 15S sing 63 n n CAF H30 15S sing 64 n n CAL H32 15S sing 65 n n CAJ H33 15S sing 66 n n CAK H34 15S sing 67 n n CAM H35 15S sing 68 n n # _atom_sites.entry_id 4HHZ _atom_sites.fract_transf_matrix[1][1] 0.009707 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 15S A 1 401 401 15S 15S . F 3 SO4 A 1 402 402 SO4 SO4 . G 2 15S B 1 401 401 15S 15S . H 3 SO4 B 1 402 402 SO4 SO4 . I 2 15S C 1 401 401 15S 15S . J 2 15S D 1 401 401 15S 15S . K 3 SO4 D 1 402 402 SO4 SO4 . L 4 HOH A 1 501 501 HOH HOH . L 4 HOH A 2 502 502 HOH HOH . L 4 HOH A 3 503 503 HOH HOH . L 4 HOH A 4 504 504 HOH HOH . L 4 HOH A 5 505 505 HOH HOH . L 4 HOH A 6 506 506 HOH HOH . M 4 HOH B 1 501 501 HOH HOH . M 4 HOH B 2 502 502 HOH HOH . M 4 HOH B 3 503 503 HOH HOH . M 4 HOH B 4 504 504 HOH HOH . M 4 HOH B 5 505 505 HOH HOH . M 4 HOH B 6 506 506 HOH HOH . M 4 HOH B 7 507 507 HOH HOH . M 4 HOH B 8 508 508 HOH HOH . M 4 HOH B 9 509 509 HOH HOH . N 4 HOH C 1 501 501 HOH HOH . N 4 HOH C 2 502 502 HOH HOH . N 4 HOH C 3 503 503 HOH HOH . N 4 HOH C 4 504 504 HOH HOH . N 4 HOH C 5 505 505 HOH HOH . N 4 HOH C 6 506 506 HOH HOH . N 4 HOH C 7 507 507 HOH HOH . O 4 HOH D 1 501 501 HOH HOH . O 4 HOH D 2 502 502 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 15S . . . J 2 -14.627 -16.989 -50.54 1 12.19 ? OAC 15S 401 D 1 HETATM 2 C CAX 15S . . . J 2 -14.954 -18.282 -50.305 1 11.69 ? CAX 15S 401 D 1 HETATM 3 N NAU 15S . . . J 2 -15.442 -18.581 -48.875 1 13.8 ? NAU 15S 401 D 1 HETATM 4 C CAS 15S . . . J 2 -15.987 -19.925 -48.76 1 12.27 ? CAS 15S 401 D 1 HETATM 5 C CBG 15S . . . J 2 -17.245 -19.944 -49.643 1 17.42 ? CBG 15S 401 D 1 HETATM 6 C CBE 15S . . . J 2 -16.976 -19.62 -51.087 1 15.91 ? CBE 15S 401 D 1 HETATM 7 C CBD 15S . . . J 2 -15.882 -18.802 -51.366 1 14.17 ? CBD 15S 401 D 1 HETATM 8 C CAI 15S . . . J 2 -15.618 -18.472 -52.767 1 12.92 ? CAI 15S 401 D 1 HETATM 9 C CAG 15S . . . J 2 -16.441 -18.978 -53.748 1 13.09 ? CAG 15S 401 D 1 HETATM 10 C CAH 15S . . . J 2 -17.549 -19.795 -53.444 1 11.03 ? CAH 15S 401 D 1 HETATM 11 C CBC 15S . . . J 2 -17.82 -20.115 -52.055 1 16.25 ? CBC 15S 401 D 1 HETATM 12 C CAP 15S . . . J 2 -18.982 -20.971 -51.743 1 18.81 ? CAP 15S 401 D 1 HETATM 13 C CAR 15S . . . J 2 -18.566 -21.901 -50.683 1 18.35 ? CAR 15S 401 D 1 HETATM 14 N NBI 15S . . . J 2 -18.171 -21.143 -49.485 1 28.33 ? NBI 15S 401 D 1 HETATM 15 C CAT 15S . . . J 2 -19.178 -20.994 -48.499 1 31.11 ? CAT 15S 401 D 1 HETATM 16 C CAW 15S . . . J 2 -18.722 -21.834 -47.359 1 29.75 ? CAW 15S 401 D 1 HETATM 17 O OAB 15S . . . J 2 -17.613 -21.662 -46.888 1 40.64 ? OAB 15S 401 D 1 HETATM 18 N N 15S . . . J 2 -19.635 -22.849 -46.96 1 38.25 ? N 15S 401 D 1 HETATM 19 C CA 15S . . . J 2 -19.256 -23.711 -45.908 1 54.83 ? CA 15S 401 D 1 HETATM 20 C CB 15S . . . J 2 -20.377 -24.538 -45.578 1 63.33 ? CB 15S 401 D 1 HETATM 21 C C 15S . . . J 2 -17.977 -24.486 -46.39 1 55.58 ? C 15S 401 D 1 HETATM 22 O O 15S . . . J 2 -17.888 -24.78 -47.54 1 45.73 ? O 15S 401 D 1 HETATM 23 N NBH 15S . . . J 2 -16.894 -24.805 -45.434 1 46.61 ? NBH 15S 401 D 1 HETATM 24 C CAQ 15S . . . J 2 -15.65 -25.534 -45.788 1 45.81 ? CAQ 15S 401 D 1 HETATM 25 C CAO 15S . . . J 2 -14.733 -25.929 -44.661 1 41.16 ? CAO 15S 401 D 1 HETATM 26 C CAN 15S . . . J 2 -17.035 -24.437 -44.059 1 39.56 ? CAN 15S 401 D 1 HETATM 27 C CAF 15S . . . J 2 -16.746 -25.65 -43.234 1 40.15 ? CAF 15S 401 D 1 HETATM 28 C CAY 15S . . . J 2 -15.27 -25.9 -43.273 1 44.74 ? CAY 15S 401 D 1 HETATM 29 C CBB 15S . . . J 2 -14.931 -27.126 -42.39 1 48.03 ? CBB 15S 401 D 1 HETATM 30 C CAL 15S . . . J 2 -13.812 -27.942 -42.675 1 44.22 ? CAL 15S 401 D 1 HETATM 31 C CAJ 15S . . . J 2 -13.53 -29.026 -41.86 1 41.31 ? CAJ 15S 401 D 1 HETATM 32 C CBA 15S . . . J 2 -14.34 -29.31 -40.764 1 47.47 ? CBA 15S 401 D 1 HETATM 33 F FAE 15S . . . J 2 -14.079 -30.333 -40.011 1 41.4 ? FAE 15S 401 D 1 HETATM 34 C CAK 15S . . . J 2 -15.43 -28.511 -40.477 1 48.77 ? CAK 15S 401 D 1 HETATM 35 C CAM 15S . . . J 2 -15.718 -27.403 -41.31 1 48.41 ? CAM 15S 401 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #