data_4HI5 # _model_server_result.job_id NGVWHZ-_cVnI7s6ua5o3KA _model_server_result.datetime_utc '2024-12-22 06:06:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hi5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4HI5 # _exptl.entry_id 4HI5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HI5 _cell.length_a 139.637 _cell.length_b 139.637 _cell.length_c 139.637 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HI5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 4HI5 _atom_sites.fract_transf_matrix[1][1] 0.007161 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id C5P _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id C5P _pdbx_nonpoly_scheme.auth_mon_id C5P _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . B 2 -1.809 -6.574 -32.166 1 187.69 ? O3P C5P 201 A 1 HETATM 2 P P C5P . . . B 2 -1.31 -5.933 -33.445 1 188.46 ? P C5P 201 A 1 HETATM 3 O O1P C5P . . . B 2 -1.188 -4.429 -33.367 1 188.21 ? O1P C5P 201 A 1 HETATM 4 O O2P C5P . . . B 2 -0.107 -6.62 -34.055 1 189.15 ? O2P C5P 201 A 1 HETATM 5 O O5' C5P . . . B 2 -2.508 -6.203 -34.498 1 183.6 ? O5' C5P 201 A 1 HETATM 6 C C5' C5P . . . B 2 -2.433 -5.823 -35.877 1 168.95 ? C5' C5P 201 A 1 HETATM 7 C C4' C5P . . . B 2 -3.025 -4.43 -36.082 1 159.6 ? C4' C5P 201 A 1 HETATM 8 O O4' C5P . . . B 2 -3.333 -4.205 -37.461 1 152.62 ? O4' C5P 201 A 1 HETATM 9 C C3' C5P . . . B 2 -4.326 -4.218 -35.318 1 157.53 ? C3' C5P 201 A 1 HETATM 10 O O3' C5P . . . B 2 -4.078 -3.636 -34.033 1 159.1 ? O3' C5P 201 A 1 HETATM 11 C C2' C5P . . . B 2 -5.151 -3.303 -36.203 1 155.94 ? C2' C5P 201 A 1 HETATM 12 O O2' C5P . . . B 2 -5.115 -1.946 -35.743 1 157.3 ? O2' C5P 201 A 1 HETATM 13 C C1' C5P . . . B 2 -4.498 -3.376 -37.576 1 152.56 ? C1' C5P 201 A 1 HETATM 14 N N1 C5P . . . B 2 -5.465 -3.882 -38.565 1 150.67 ? N1 C5P 201 A 1 HETATM 15 C C2 C5P . . . B 2 -5.747 -5.266 -38.744 1 149.29 ? C2 C5P 201 A 1 HETATM 16 N N3 C5P . . . B 2 -6.654 -5.654 -39.675 1 146.68 ? N3 C5P 201 A 1 HETATM 17 C C4 C5P . . . B 2 -7.299 -4.74 -40.438 1 145.79 ? C4 C5P 201 A 1 HETATM 18 C C5 C5P . . . B 2 -7.036 -3.387 -40.273 1 147.08 ? C5 C5P 201 A 1 HETATM 19 C C6 C5P . . . B 2 -6.107 -2.979 -39.322 1 150.9 ? C6 C5P 201 A 1 HETATM 20 O O2 C5P . . . B 2 -5.175 -6.146 -38.062 1 150.61 ? O2 C5P 201 A 1 HETATM 21 N N4 C5P . . . B 2 -8.201 -5.13 -41.367 1 145.22 ? N4 C5P 201 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 847 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #