data_4HI6 # _model_server_result.job_id fnasSzW4ytY0NklVe2Hx5Q _model_server_result.datetime_utc '2025-03-13 16:52:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4HI6 # _exptl.entry_id 4HI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HI6 _cell.length_a 158.066 _cell.length_b 158.066 _cell.length_c 103.714 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 1 n n P O2P 3GP sing 2 n n P O3P 3GP sing 3 n n P O3' 3GP sing 4 n n O2P HOP2 3GP sing 5 n n O3P HOP3 3GP sing 6 n n O5' C5' 3GP sing 7 n n O5' HO5' 3GP sing 8 n n C5' C4' 3GP sing 9 n n C5' "H5'1" 3GP sing 10 n n C5' "H5'2" 3GP sing 11 n n C4' O4' 3GP sing 12 n n C4' C3' 3GP sing 13 n n C4' H4' 3GP sing 14 n n O4' C1' 3GP sing 15 n n C3' O3' 3GP sing 16 n n C3' C2' 3GP sing 17 n n C3' H3' 3GP sing 18 n n C2' O2' 3GP sing 19 n n C2' C1' 3GP sing 20 n n C2' H2' 3GP sing 21 n n O2' HO2' 3GP sing 22 n n C1' N9 3GP sing 23 n n C1' H1' 3GP sing 24 n n N9 C8 3GP sing 25 n y N9 C4 3GP sing 26 n y C8 N7 3GP doub 27 n y C8 H8 3GP sing 28 n n N7 C5 3GP sing 29 n y C5 C6 3GP sing 30 n n C5 C4 3GP doub 31 n y C6 O6 3GP doub 32 n n C6 N1 3GP sing 33 n n N1 C2 3GP sing 34 n n N1 HN1 3GP sing 35 n n C2 N2 3GP sing 36 n n C2 N3 3GP doub 37 n n N2 HN21 3GP sing 38 n n N2 HN22 3GP sing 39 n n N3 C4 3GP sing 40 n n # _atom_sites.entry_id 4HI6 _atom_sites.fract_transf_matrix[1][1] 0.006326 _atom_sites.fract_transf_matrix[1][2] 0.003653 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3GP A 1 201 201 3GP 3GP . F 3 CL A 1 202 202 CL CL . G 2 3GP B 1 201 201 3GP 3GP . H 3 CL B 1 202 202 CL CL . I 3 CL B 1 203 203 CL CL . J 3 CL C 1 201 201 CL CL . K 3 CL C 1 202 202 CL CL . L 4 HOH A 1 301 301 HOH HOH . L 4 HOH A 2 302 302 HOH HOH . L 4 HOH A 3 303 303 HOH HOH . L 4 HOH A 4 304 304 HOH HOH . L 4 HOH A 5 305 305 HOH HOH . L 4 HOH A 6 306 306 HOH HOH . L 4 HOH A 7 307 307 HOH HOH . L 4 HOH A 8 308 308 HOH HOH . L 4 HOH A 9 309 309 HOH HOH . L 4 HOH A 10 310 310 HOH HOH . L 4 HOH A 11 311 311 HOH HOH . L 4 HOH A 12 312 312 HOH HOH . L 4 HOH A 13 313 313 HOH HOH . L 4 HOH A 14 314 314 HOH HOH . L 4 HOH A 15 315 315 HOH HOH . L 4 HOH A 16 316 316 HOH HOH . L 4 HOH A 17 317 317 HOH HOH . L 4 HOH A 18 318 318 HOH HOH . L 4 HOH A 19 319 319 HOH HOH . L 4 HOH A 20 320 320 HOH HOH . L 4 HOH A 21 321 321 HOH HOH . L 4 HOH A 22 322 322 HOH HOH . L 4 HOH A 23 323 323 HOH HOH . M 4 HOH B 1 301 301 HOH HOH . M 4 HOH B 2 302 302 HOH HOH . M 4 HOH B 3 303 303 HOH HOH . M 4 HOH B 4 304 304 HOH HOH . M 4 HOH B 5 305 305 HOH HOH . M 4 HOH B 6 306 306 HOH HOH . M 4 HOH B 7 307 307 HOH HOH . M 4 HOH B 8 308 308 HOH HOH . M 4 HOH B 9 309 309 HOH HOH . M 4 HOH B 10 310 310 HOH HOH . M 4 HOH B 11 311 311 HOH HOH . M 4 HOH B 12 312 312 HOH HOH . M 4 HOH B 13 313 313 HOH HOH . M 4 HOH B 14 314 314 HOH HOH . M 4 HOH B 15 315 315 HOH HOH . M 4 HOH B 16 316 316 HOH HOH . M 4 HOH B 17 317 317 HOH HOH . M 4 HOH B 18 318 318 HOH HOH . M 4 HOH B 19 319 319 HOH HOH . M 4 HOH B 20 320 320 HOH HOH . M 4 HOH B 21 321 321 HOH HOH . M 4 HOH B 22 322 322 HOH HOH . M 4 HOH B 23 323 323 HOH HOH . M 4 HOH B 24 324 324 HOH HOH . M 4 HOH B 25 325 325 HOH HOH . M 4 HOH B 26 326 326 HOH HOH . M 4 HOH B 27 327 327 HOH HOH . M 4 HOH B 28 328 328 HOH HOH . M 4 HOH B 29 329 329 HOH HOH . M 4 HOH B 30 330 330 HOH HOH . M 4 HOH B 31 331 331 HOH HOH . M 4 HOH B 32 332 332 HOH HOH . N 4 HOH C 1 301 301 HOH HOH . N 4 HOH C 2 302 302 HOH HOH . N 4 HOH C 3 303 303 HOH HOH . N 4 HOH C 4 304 304 HOH HOH . N 4 HOH C 5 305 305 HOH HOH . N 4 HOH C 6 306 306 HOH HOH . N 4 HOH C 7 307 307 HOH HOH . N 4 HOH C 8 308 308 HOH HOH . N 4 HOH C 9 309 309 HOH HOH . N 4 HOH C 10 310 310 HOH HOH . N 4 HOH C 11 311 311 HOH HOH . N 4 HOH C 12 312 312 HOH HOH . N 4 HOH C 13 313 313 HOH HOH . N 4 HOH C 14 314 314 HOH HOH . N 4 HOH C 15 315 315 HOH HOH . N 4 HOH C 16 316 316 HOH HOH . N 4 HOH C 17 317 317 HOH HOH . N 4 HOH C 18 318 318 HOH HOH . N 4 HOH C 19 319 319 HOH HOH . N 4 HOH C 20 320 320 HOH HOH . N 4 HOH C 21 321 321 HOH HOH . N 4 HOH C 22 322 322 HOH HOH . N 4 HOH C 23 323 323 HOH HOH . N 4 HOH C 24 324 324 HOH HOH . N 4 HOH C 25 325 325 HOH HOH . N 4 HOH C 26 326 326 HOH HOH . N 4 HOH C 27 327 327 HOH HOH . N 4 HOH C 28 328 328 HOH HOH . O 4 HOH D 1 201 201 HOH HOH . O 4 HOH D 2 202 202 HOH HOH . O 4 HOH D 3 203 203 HOH HOH . O 4 HOH D 4 204 204 HOH HOH . O 4 HOH D 5 205 205 HOH HOH . O 4 HOH D 6 206 206 HOH HOH . O 4 HOH D 7 207 207 HOH HOH . O 4 HOH D 8 208 208 HOH HOH . O 4 HOH D 9 209 209 HOH HOH . O 4 HOH D 10 210 210 HOH HOH . O 4 HOH D 11 211 211 HOH HOH . O 4 HOH D 12 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . E 2 -19.112 -7.167 54.18 0.7 60.46 ? P 3GP 201 A 1 HETATM 2 O O1P 3GP . . . E 2 -18.727 -7.944 52.945 0.7 60.43 ? O1P 3GP 201 A 1 HETATM 3 O O2P 3GP . . . E 2 -17.936 -6.793 55.054 0.7 58.32 ? O2P 3GP 201 A 1 HETATM 4 O O3P 3GP . . . E 2 -20.315 -7.702 54.924 0.7 57.84 ? O3P 3GP 201 A 1 HETATM 5 O O5' 3GP . . . E 2 -18.78 -6.133 49.035 0.7 59.09 ? O5' 3GP 201 A 1 HETATM 6 C C5' 3GP . . . E 2 -19.604 -6.534 50.137 0.7 59.49 ? C5' 3GP 201 A 1 HETATM 7 C C4' 3GP . . . E 2 -19.621 -5.409 51.164 0.7 59.95 ? C4' 3GP 201 A 1 HETATM 8 O O4' 3GP . . . E 2 -20.199 -4.253 50.556 0.7 58.66 ? O4' 3GP 201 A 1 HETATM 9 C C3' 3GP . . . E 2 -20.432 -5.715 52.422 0.7 59.61 ? C3' 3GP 201 A 1 HETATM 10 O O3' 3GP . . . E 2 -19.6 -5.767 53.576 0.7 59.27 ? O3' 3GP 201 A 1 HETATM 11 C C2' 3GP . . . E 2 -21.398 -4.567 52.594 0.7 58.33 ? C2' 3GP 201 A 1 HETATM 12 O O2' 3GP . . . E 2 -21.165 -3.886 53.832 0.7 61.56 ? O2' 3GP 201 A 1 HETATM 13 C C1' 3GP . . . E 2 -21.14 -3.625 51.433 0.7 56.84 ? C1' 3GP 201 A 1 HETATM 14 N N9 3GP . . . E 2 -22.406 -3.335 50.719 0.7 53.77 ? N9 3GP 201 A 1 HETATM 15 C C8 3GP . . . E 2 -23.07 -2.162 50.75 0.7 52.26 ? C8 3GP 201 A 1 HETATM 16 N N7 3GP . . . E 2 -24.19 -2.229 49.988 0.7 50.9 ? N7 3GP 201 A 1 HETATM 17 C C5 3GP . . . E 2 -24.254 -3.464 49.469 0.7 50.47 ? C5 3GP 201 A 1 HETATM 18 C C6 3GP . . . E 2 -25.173 -4.208 48.578 0.7 49.09 ? C6 3GP 201 A 1 HETATM 19 O O6 3GP . . . E 2 -26.191 -3.651 48.129 0.7 47.3 ? O6 3GP 201 A 1 HETATM 20 N N1 3GP . . . E 2 -24.883 -5.486 48.265 0.7 48.76 ? N1 3GP 201 A 1 HETATM 21 C C2 3GP . . . E 2 -23.78 -6.104 48.734 0.7 49.01 ? C2 3GP 201 A 1 HETATM 22 N N2 3GP . . . E 2 -23.544 -7.396 48.378 0.7 50.36 ? N2 3GP 201 A 1 HETATM 23 N N3 3GP . . . E 2 -22.894 -5.48 49.555 0.7 50.43 ? N3 3GP 201 A 1 HETATM 24 C C4 3GP . . . E 2 -23.073 -4.192 49.947 0.7 51.04 ? C4 3GP 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #