data_4HI6 # _model_server_result.job_id PWwL5lf2A4vQ2eDWAkh3Eg _model_server_result.datetime_utc '2025-03-13 17:24:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":201}' # _entry.id 4HI6 # _exptl.entry_id 4HI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-3'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HI6 _cell.length_a 158.066 _cell.length_b 158.066 _cell.length_c 103.714 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 3GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-3'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 3GP doub 1 n n P O2P 3GP sing 2 n n P O3P 3GP sing 3 n n P O3' 3GP sing 4 n n O2P HOP2 3GP sing 5 n n O3P HOP3 3GP sing 6 n n O5' C5' 3GP sing 7 n n O5' HO5' 3GP sing 8 n n C5' C4' 3GP sing 9 n n C5' "H5'1" 3GP sing 10 n n C5' "H5'2" 3GP sing 11 n n C4' O4' 3GP sing 12 n n C4' C3' 3GP sing 13 n n C4' H4' 3GP sing 14 n n O4' C1' 3GP sing 15 n n C3' O3' 3GP sing 16 n n C3' C2' 3GP sing 17 n n C3' H3' 3GP sing 18 n n C2' O2' 3GP sing 19 n n C2' C1' 3GP sing 20 n n C2' H2' 3GP sing 21 n n O2' HO2' 3GP sing 22 n n C1' N9 3GP sing 23 n n C1' H1' 3GP sing 24 n n N9 C8 3GP sing 25 n y N9 C4 3GP sing 26 n y C8 N7 3GP doub 27 n y C8 H8 3GP sing 28 n n N7 C5 3GP sing 29 n y C5 C6 3GP sing 30 n n C5 C4 3GP doub 31 n y C6 O6 3GP doub 32 n n C6 N1 3GP sing 33 n n N1 C2 3GP sing 34 n n N1 HN1 3GP sing 35 n n C2 N2 3GP sing 36 n n C2 N3 3GP doub 37 n n N2 HN21 3GP sing 38 n n N2 HN22 3GP sing 39 n n N3 C4 3GP sing 40 n n # _atom_sites.entry_id 4HI6 _atom_sites.fract_transf_matrix[1][1] 0.006326 _atom_sites.fract_transf_matrix[1][2] 0.003653 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3GP A 1 201 201 3GP 3GP . F 3 CL A 1 202 202 CL CL . G 2 3GP B 1 201 201 3GP 3GP . H 3 CL B 1 202 202 CL CL . I 3 CL B 1 203 203 CL CL . J 3 CL C 1 201 201 CL CL . K 3 CL C 1 202 202 CL CL . L 4 HOH A 1 301 301 HOH HOH . L 4 HOH A 2 302 302 HOH HOH . L 4 HOH A 3 303 303 HOH HOH . L 4 HOH A 4 304 304 HOH HOH . L 4 HOH A 5 305 305 HOH HOH . L 4 HOH A 6 306 306 HOH HOH . L 4 HOH A 7 307 307 HOH HOH . L 4 HOH A 8 308 308 HOH HOH . L 4 HOH A 9 309 309 HOH HOH . L 4 HOH A 10 310 310 HOH HOH . L 4 HOH A 11 311 311 HOH HOH . L 4 HOH A 12 312 312 HOH HOH . L 4 HOH A 13 313 313 HOH HOH . L 4 HOH A 14 314 314 HOH HOH . L 4 HOH A 15 315 315 HOH HOH . L 4 HOH A 16 316 316 HOH HOH . L 4 HOH A 17 317 317 HOH HOH . L 4 HOH A 18 318 318 HOH HOH . L 4 HOH A 19 319 319 HOH HOH . L 4 HOH A 20 320 320 HOH HOH . L 4 HOH A 21 321 321 HOH HOH . L 4 HOH A 22 322 322 HOH HOH . L 4 HOH A 23 323 323 HOH HOH . M 4 HOH B 1 301 301 HOH HOH . M 4 HOH B 2 302 302 HOH HOH . M 4 HOH B 3 303 303 HOH HOH . M 4 HOH B 4 304 304 HOH HOH . M 4 HOH B 5 305 305 HOH HOH . M 4 HOH B 6 306 306 HOH HOH . M 4 HOH B 7 307 307 HOH HOH . M 4 HOH B 8 308 308 HOH HOH . M 4 HOH B 9 309 309 HOH HOH . M 4 HOH B 10 310 310 HOH HOH . M 4 HOH B 11 311 311 HOH HOH . M 4 HOH B 12 312 312 HOH HOH . M 4 HOH B 13 313 313 HOH HOH . M 4 HOH B 14 314 314 HOH HOH . M 4 HOH B 15 315 315 HOH HOH . M 4 HOH B 16 316 316 HOH HOH . M 4 HOH B 17 317 317 HOH HOH . M 4 HOH B 18 318 318 HOH HOH . M 4 HOH B 19 319 319 HOH HOH . M 4 HOH B 20 320 320 HOH HOH . M 4 HOH B 21 321 321 HOH HOH . M 4 HOH B 22 322 322 HOH HOH . M 4 HOH B 23 323 323 HOH HOH . M 4 HOH B 24 324 324 HOH HOH . M 4 HOH B 25 325 325 HOH HOH . M 4 HOH B 26 326 326 HOH HOH . M 4 HOH B 27 327 327 HOH HOH . M 4 HOH B 28 328 328 HOH HOH . M 4 HOH B 29 329 329 HOH HOH . M 4 HOH B 30 330 330 HOH HOH . M 4 HOH B 31 331 331 HOH HOH . M 4 HOH B 32 332 332 HOH HOH . N 4 HOH C 1 301 301 HOH HOH . N 4 HOH C 2 302 302 HOH HOH . N 4 HOH C 3 303 303 HOH HOH . N 4 HOH C 4 304 304 HOH HOH . N 4 HOH C 5 305 305 HOH HOH . N 4 HOH C 6 306 306 HOH HOH . N 4 HOH C 7 307 307 HOH HOH . N 4 HOH C 8 308 308 HOH HOH . N 4 HOH C 9 309 309 HOH HOH . N 4 HOH C 10 310 310 HOH HOH . N 4 HOH C 11 311 311 HOH HOH . N 4 HOH C 12 312 312 HOH HOH . N 4 HOH C 13 313 313 HOH HOH . N 4 HOH C 14 314 314 HOH HOH . N 4 HOH C 15 315 315 HOH HOH . N 4 HOH C 16 316 316 HOH HOH . N 4 HOH C 17 317 317 HOH HOH . N 4 HOH C 18 318 318 HOH HOH . N 4 HOH C 19 319 319 HOH HOH . N 4 HOH C 20 320 320 HOH HOH . N 4 HOH C 21 321 321 HOH HOH . N 4 HOH C 22 322 322 HOH HOH . N 4 HOH C 23 323 323 HOH HOH . N 4 HOH C 24 324 324 HOH HOH . N 4 HOH C 25 325 325 HOH HOH . N 4 HOH C 26 326 326 HOH HOH . N 4 HOH C 27 327 327 HOH HOH . N 4 HOH C 28 328 328 HOH HOH . O 4 HOH D 1 201 201 HOH HOH . O 4 HOH D 2 202 202 HOH HOH . O 4 HOH D 3 203 203 HOH HOH . O 4 HOH D 4 204 204 HOH HOH . O 4 HOH D 5 205 205 HOH HOH . O 4 HOH D 6 206 206 HOH HOH . O 4 HOH D 7 207 207 HOH HOH . O 4 HOH D 8 208 208 HOH HOH . O 4 HOH D 9 209 209 HOH HOH . O 4 HOH D 10 210 210 HOH HOH . O 4 HOH D 11 211 211 HOH HOH . O 4 HOH D 12 212 212 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3GP . . . G 2 -38.061 18.608 30.482 1 45.37 ? P 3GP 201 B 1 HETATM 2 O O1P 3GP . . . G 2 -38.123 17.181 30.973 1 46.69 ? O1P 3GP 201 B 1 HETATM 3 O O2P 3GP . . . G 2 -37.171 19.506 31.32 1 45.88 ? O2P 3GP 201 B 1 HETATM 4 O O3P 3GP . . . G 2 -39.412 19.121 30.084 1 41.38 ? O3P 3GP 201 B 1 HETATM 5 O O5' 3GP . . . G 2 -34.657 14.757 30.154 1 46.52 ? O5' 3GP 201 B 1 HETATM 6 C C5' 3GP . . . G 2 -35.935 15.349 29.874 1 47.85 ? C5' 3GP 201 B 1 HETATM 7 C C4' 3GP . . . G 2 -35.803 16.591 28.99 1 48.88 ? C4' 3GP 201 B 1 HETATM 8 O O4' 3GP . . . G 2 -35.129 16.299 27.771 1 49.73 ? O4' 3GP 201 B 1 HETATM 9 C C3' 3GP . . . G 2 -37.137 17.207 28.567 1 49.39 ? C3' 3GP 201 B 1 HETATM 10 O O3' 3GP . . . G 2 -37.266 18.508 29.111 1 46.37 ? O3' 3GP 201 B 1 HETATM 11 C C2' 3GP . . . G 2 -37.156 17.36 27.071 1 50.91 ? C2' 3GP 201 B 1 HETATM 12 O O2' 3GP . . . G 2 -37.536 18.672 26.63 1 57.64 ? O2' 3GP 201 B 1 HETATM 13 C C1' 3GP . . . G 2 -35.732 17.021 26.687 1 48.71 ? C1' 3GP 201 B 1 HETATM 14 N N9 3GP . . . G 2 -35.85 16.133 25.536 1 44.81 ? N9 3GP 201 B 1 HETATM 15 C C8 3GP . . . G 2 -35.536 16.402 24.261 1 45.91 ? C8 3GP 201 B 1 HETATM 16 N N7 3GP . . . G 2 -35.81 15.327 23.489 1 43.51 ? N7 3GP 201 B 1 HETATM 17 C C5 3GP . . . G 2 -36.316 14.383 24.297 1 43.98 ? C5 3GP 201 B 1 HETATM 18 C C6 3GP . . . G 2 -36.825 13.02 24.145 1 39.92 ? C6 3GP 201 B 1 HETATM 19 O O6 3GP . . . G 2 -36.792 12.558 23.001 1 37.25 ? O6 3GP 201 B 1 HETATM 20 N N1 3GP . . . G 2 -37.27 12.346 25.234 1 39.54 ? N1 3GP 201 B 1 HETATM 21 C C2 3GP . . . G 2 -37.268 12.912 26.467 1 40.33 ? C2 3GP 201 B 1 HETATM 22 N N2 3GP . . . G 2 -37.722 12.229 27.554 1 39.5 ? N2 3GP 201 B 1 HETATM 23 N N3 3GP . . . G 2 -36.828 14.176 26.673 1 41.97 ? N3 3GP 201 B 1 HETATM 24 C C4 3GP . . . G 2 -36.351 14.923 25.647 1 43.29 ? C4 3GP 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 505 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #