data_4HIG
#
_model_server_result.job_id            wqB4lMbdA84zpCtChma6KA 
_model_server_result.datetime_utc      '2024-11-02 02:29:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hig 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":101}' 
#
_entry.id    4HIG 
#
_exptl.entry_id    4HIG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              206.372 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SPERMINE (FULLY PROTONATED FORM)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HIG 
_cell.length_a            17.732 
_cell.length_b            31.436 
_cell.length_c            43.935 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HIG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N7 DG 6 A DG 6 1_555 D MN MN . A MN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc2 D MN MN . A MN 102 1_555 E O HOH . A HOH 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc3 D MN MN . A MN 102 1_555 E O HOH . A HOH 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc4 D MN MN . A MN 102 1_555 E O HOH . A HOH 216 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc5 D MN MN . A MN 102 1_555 E O HOH . A HOH 216 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc6 D MN MN . A MN 102 1_555 E O HOH . A HOH 250 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.947 ? 
metalc ? metalc7 D MN MN . A MN 102 1_555 E O HOH . A HOH 250 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc8 D MN MN . A MN 102 1_555 E O HOH . A HOH 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc9 D MN MN . A MN 102 1_555 E O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 6 B DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 4 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 3 B DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 1 B DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C10 H30 N4 4' 
_chem_comp.formula_weight    206.372 
_chem_comp.id                SPK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SPERMINE (FULLY PROTONATED FORM)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPK sing 77 n n 
N1 H1A SPK sing 78 n n 
N1 H1B SPK sing 79 n n 
N1 H1C SPK sing 80 n n 
C2 C3 SPK sing 81 n n 
C2 H2A SPK sing 82 n n 
C2 H2B SPK sing 83 n n 
C3 C4 SPK sing 84 n n 
C3 H3A SPK sing 85 n n 
C3 H3B SPK sing 86 n n 
C4 N5 SPK sing 87 n n 
C4 H4A SPK sing 88 n n 
C4 H4B SPK sing 89 n n 
N5 C6 SPK sing 90 n n 
N5 H5A SPK sing 91 n n 
N5 H5B SPK sing 92 n n 
C6 C7 SPK sing 93 n n 
C6 H6A SPK sing 94 n n 
C6 H6B SPK sing 95 n n 
C7 C8 SPK sing 96 n n 
C7 H7A SPK sing 97 n n 
C7 H7B SPK sing 98 n n 
C8 C9 SPK sing 99 n n 
C8 H8A SPK sing 100 n n 
C8 H8B SPK sing 101 n n 
C9 N10 SPK sing 102 n n 
C9 H9A SPK sing 103 n n 
C9 H9B SPK sing 104 n n 
N10 C11 SPK sing 105 n n 
N10 H101 SPK sing 106 n n 
N10 H102 SPK sing 107 n n 
C11 C12 SPK sing 108 n n 
C11 H111 SPK sing 109 n n 
C11 H112 SPK sing 110 n n 
C12 C13 SPK sing 111 n n 
C12 H121 SPK sing 112 n n 
C12 H122 SPK sing 113 n n 
C13 N14 SPK sing 114 n n 
C13 H131 SPK sing 115 n n 
C13 H132 SPK sing 116 n n 
N14 H141 SPK sing 117 n n 
N14 H142 SPK sing 118 n n 
N14 H143 SPK sing 119 n n 
#
_atom_sites.entry_id                     4HIG 
_atom_sites.fract_transf_matrix[1][1]    0.056395 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.031811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022761 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SPK A 1 101 13 SPK SPK . 
D 3 MN A 1 102 14 MN MN . 
E 4 HOH A 1 201 16 HOH HOH . 
E 4 HOH A 2 202 17 HOH HOH . 
E 4 HOH A 3 203 19 HOH HOH . 
E 4 HOH A 4 204 20 HOH HOH . 
E 4 HOH A 5 205 23 HOH HOH . 
E 4 HOH A 6 206 27 HOH HOH . 
E 4 HOH A 7 207 28 HOH HOH . 
E 4 HOH A 8 208 29 HOH HOH . 
E 4 HOH A 9 209 31 HOH HOH . 
E 4 HOH A 10 210 33 HOH HOH . 
E 4 HOH A 11 211 36 HOH HOH . 
E 4 HOH A 12 212 39 HOH HOH . 
E 4 HOH A 13 213 40 HOH HOH . 
E 4 HOH A 14 214 41 HOH HOH . 
E 4 HOH A 15 215 45 HOH HOH . 
E 4 HOH A 16 216 47 HOH HOH . 
E 4 HOH A 17 217 49 HOH HOH . 
E 4 HOH A 18 218 50 HOH HOH . 
E 4 HOH A 19 219 52 HOH HOH . 
E 4 HOH A 20 220 53 HOH HOH . 
E 4 HOH A 21 221 54 HOH HOH . 
E 4 HOH A 22 222 55 HOH HOH . 
E 4 HOH A 23 223 56 HOH HOH . 
E 4 HOH A 24 224 62 HOH HOH . 
E 4 HOH A 25 225 64 HOH HOH . 
E 4 HOH A 26 226 65 HOH HOH . 
E 4 HOH A 27 227 66 HOH HOH . 
E 4 HOH A 28 228 68 HOH HOH . 
E 4 HOH A 29 229 69 HOH HOH . 
E 4 HOH A 30 230 70 HOH HOH . 
E 4 HOH A 31 231 73 HOH HOH . 
E 4 HOH A 32 232 74 HOH HOH . 
E 4 HOH A 33 233 75 HOH HOH . 
E 4 HOH A 34 234 76 HOH HOH . 
E 4 HOH A 35 235 79 HOH HOH . 
E 4 HOH A 36 236 80 HOH HOH . 
E 4 HOH A 37 237 84 HOH HOH . 
E 4 HOH A 38 238 86 HOH HOH . 
E 4 HOH A 39 239 87 HOH HOH . 
E 4 HOH A 40 240 89 HOH HOH . 
E 4 HOH A 41 241 90 HOH HOH . 
E 4 HOH A 42 242 91 HOH HOH . 
E 4 HOH A 43 243 93 HOH HOH . 
E 4 HOH A 44 244 94 HOH HOH . 
E 4 HOH A 45 245 99 HOH HOH . 
E 4 HOH A 46 246 102 HOH HOH . 
E 4 HOH A 47 247 103 HOH HOH . 
E 4 HOH A 48 248 104 HOH HOH . 
E 4 HOH A 49 249 105 HOH HOH . 
E 4 HOH A 50 250 106 HOH HOH . 
E 4 HOH A 51 251 107 HOH HOH . 
E 4 HOH A 52 252 108 HOH HOH . 
E 4 HOH A 53 253 109 HOH HOH . 
F 4 HOH B 1 101 15 HOH HOH . 
F 4 HOH B 2 102 18 HOH HOH . 
F 4 HOH B 3 103 21 HOH HOH . 
F 4 HOH B 4 104 22 HOH HOH . 
F 4 HOH B 5 105 24 HOH HOH . 
F 4 HOH B 6 106 26 HOH HOH . 
F 4 HOH B 7 107 32 HOH HOH . 
F 4 HOH B 8 108 34 HOH HOH . 
F 4 HOH B 9 109 35 HOH HOH . 
F 4 HOH B 10 110 37 HOH HOH . 
F 4 HOH B 11 111 38 HOH HOH . 
F 4 HOH B 12 112 42 HOH HOH . 
F 4 HOH B 13 113 43 HOH HOH . 
F 4 HOH B 14 114 46 HOH HOH . 
F 4 HOH B 15 115 48 HOH HOH . 
F 4 HOH B 16 116 51 HOH HOH . 
F 4 HOH B 17 117 57 HOH HOH . 
F 4 HOH B 18 118 58 HOH HOH . 
F 4 HOH B 19 119 59 HOH HOH . 
F 4 HOH B 20 120 60 HOH HOH . 
F 4 HOH B 21 121 61 HOH HOH . 
F 4 HOH B 22 122 63 HOH HOH . 
F 4 HOH B 23 123 67 HOH HOH . 
F 4 HOH B 24 124 71 HOH HOH . 
F 4 HOH B 25 125 72 HOH HOH . 
F 4 HOH B 26 126 77 HOH HOH . 
F 4 HOH B 27 127 78 HOH HOH . 
F 4 HOH B 28 128 81 HOH HOH . 
F 4 HOH B 29 129 82 HOH HOH . 
F 4 HOH B 30 130 83 HOH HOH . 
F 4 HOH B 31 131 85 HOH HOH . 
F 4 HOH B 32 132 88 HOH HOH . 
F 4 HOH B 33 133 92 HOH HOH . 
F 4 HOH B 34 134 95 HOH HOH . 
F 4 HOH B 35 135 96 HOH HOH . 
F 4 HOH B 36 136 97 HOH HOH . 
F 4 HOH B 37 137 98 HOH HOH . 
F 4 HOH B 38 138 100 HOH HOH . 
F 4 HOH B 39 139 101 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPK . . . C 2 7.13 7.848 32.331 1 2.28 ? N1 SPK 101 A 1 
HETATM 2 C C2 SPK . . . C 2 7.791 7.053 31.273 1 2.73 ? C2 SPK 101 A 1 
HETATM 3 C C3 SPK . . . C 2 9.223 7.573 31.073 1 3.13 ? C3 SPK 101 A 1 
HETATM 4 C C4 SPK . . . C 2 10.049 6.782 30.086 1 3.07 ? C4 SPK 101 A 1 
HETATM 5 N N5 SPK . . . C 2 10.502 5.508 30.632 1 3.05 ? N5 SPK 101 A 1 
HETATM 6 C C6 SPK . . . C 2 11.405 4.761 29.745 1 4.7 ? C6 SPK 101 A 1 
HETATM 7 C C7 SPK . . . C 2 11.615 3.386 30.174 1 7.46 ? C7 SPK 101 A 1 
HETATM 8 C C8 SPK . A . C 2 12.349 3.149 31.411 0.52 2.76 ? C8 SPK 101 A 1 
HETATM 9 C C8 SPK . B . C 2 12.893 2.845 30.792 0.48 8.88 ? C8 SPK 101 A 1 
HETATM 10 C C9 SPK . . . C 2 12.726 1.597 31.511 1 11.34 ? C9 SPK 101 A 1 
HETATM 11 N N10 SPK . . . C 2 13.03 1.446 32.871 1 5.89 ? N10 SPK 101 A 1 
HETATM 12 C C11 SPK . . . C 2 13.217 0.066 33.354 1 5.5 ? C11 SPK 101 A 1 
HETATM 13 C C12 SPK . . . C 2 13.529 0.039 34.828 1 6.79 ? C12 SPK 101 A 1 
HETATM 14 C C13 SPK . A . C 2 13.464 -1.192 35.551 0.78 18.19 ? C13 SPK 101 A 1 
HETATM 15 C C13 SPK . B . C 2 13.759 -1.446 35.236 0.22 5.88 ? C13 SPK 101 A 1 
HETATM 16 N N14 SPK . A . C 2 14.4 -2.208 35.096 0.78 19.47 ? N14 SPK 101 A 1 
HETATM 17 N N14 SPK . B . C 2 12.462 -2.191 35.345 0.22 4.54 ? N14 SPK 101 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           206 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#