data_4HIL # _model_server_result.job_id g6tMRe-o01XJvQlbyxxZwA _model_server_result.datetime_utc '2024-10-28 02:25:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hil # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":102}' # _entry.id 4HIL # _exptl.entry_id 4HIL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HIL _cell.length_a 38.609 _cell.length_b 67.847 _cell.length_c 70.342 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HIL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 39 A HIS 39 1_555 C FE HEM . A HEM 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A NE2 HIS 39 A HIS 39 1_555 C FE HEM . A HEM 101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A NE2 HIS 63 A HIS 63 1_555 C FE HEM . A HEM 101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 A NE2 HIS 63 A HIS 63 1_555 C FE HEM . A HEM 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.043 ? metalc ? metalc5 B O ARG 34 B ARG 34 1_555 E NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 B OG SER 37 B SER 37 1_555 E NA NA . B NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc7 B NE2 HIS 39 B HIS 39 1_555 D FE HEM . B HEM 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.952 ? metalc ? metalc8 B NE2 HIS 39 B HIS 39 1_555 D FE HEM . B HEM 101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 B NE2 HIS 63 B HIS 63 1_555 D FE HEM . B HEM 101 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.981 ? metalc ? metalc10 B NE2 HIS 63 B HIS 63 1_555 D FE HEM . B HEM 101 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.12 ? metalc ? metalc11 E NA NA . B NA 102 1_555 G O HOH . B HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc12 E NA NA . B NA 102 1_555 G O HOH . B HOH 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc13 E NA NA . B NA 102 1_555 G O HOH . B HOH 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc14 E NA NA . B NA 102 1_555 G O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HIL _atom_sites.fract_transf_matrix[1][1] 0.025901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 101 1 HEM HEM . D 2 HEM B 1 101 2 HEM HEM . E 3 NA B 1 102 1 NA NA . F 4 HOH A 1 201 4 HOH HOH . F 4 HOH A 2 202 8 HOH HOH . F 4 HOH A 3 203 10 HOH HOH . F 4 HOH A 4 204 14 HOH HOH . F 4 HOH A 5 205 18 HOH HOH . F 4 HOH A 6 206 19 HOH HOH . F 4 HOH A 7 207 21 HOH HOH . F 4 HOH A 8 208 25 HOH HOH . F 4 HOH A 9 209 27 HOH HOH . F 4 HOH A 10 210 28 HOH HOH . F 4 HOH A 11 211 34 HOH HOH . F 4 HOH A 12 212 36 HOH HOH . F 4 HOH A 13 213 38 HOH HOH . F 4 HOH A 14 214 41 HOH HOH . F 4 HOH A 15 215 42 HOH HOH . F 4 HOH A 16 216 43 HOH HOH . F 4 HOH A 17 217 45 HOH HOH . F 4 HOH A 18 218 54 HOH HOH . F 4 HOH A 19 219 55 HOH HOH . F 4 HOH A 20 220 56 HOH HOH . F 4 HOH A 21 221 57 HOH HOH . F 4 HOH A 22 222 60 HOH HOH . F 4 HOH A 23 223 61 HOH HOH . F 4 HOH A 24 224 64 HOH HOH . F 4 HOH A 25 225 66 HOH HOH . F 4 HOH A 26 226 68 HOH HOH . F 4 HOH A 27 227 69 HOH HOH . F 4 HOH A 28 228 70 HOH HOH . F 4 HOH A 29 229 71 HOH HOH . F 4 HOH A 30 230 73 HOH HOH . F 4 HOH A 31 231 77 HOH HOH . F 4 HOH A 32 232 78 HOH HOH . F 4 HOH A 33 233 80 HOH HOH . F 4 HOH A 34 234 81 HOH HOH . F 4 HOH A 35 235 82 HOH HOH . F 4 HOH A 36 236 83 HOH HOH . F 4 HOH A 37 237 85 HOH HOH . F 4 HOH A 38 238 88 HOH HOH . F 4 HOH A 39 239 89 HOH HOH . F 4 HOH A 40 240 90 HOH HOH . F 4 HOH A 41 241 91 HOH HOH . F 4 HOH A 42 242 93 HOH HOH . F 4 HOH A 43 243 95 HOH HOH . F 4 HOH A 44 244 99 HOH HOH . F 4 HOH A 45 245 100 HOH HOH . F 4 HOH A 46 246 104 HOH HOH . F 4 HOH A 47 247 105 HOH HOH . F 4 HOH A 48 248 109 HOH HOH . F 4 HOH A 49 249 110 HOH HOH . F 4 HOH A 50 250 112 HOH HOH . F 4 HOH A 51 251 114 HOH HOH . F 4 HOH A 52 252 116 HOH HOH . F 4 HOH A 53 253 119 HOH HOH . F 4 HOH A 54 254 124 HOH HOH . F 4 HOH A 55 255 127 HOH HOH . F 4 HOH A 56 256 128 HOH HOH . F 4 HOH A 57 257 130 HOH HOH . F 4 HOH A 58 258 132 HOH HOH . F 4 HOH A 59 259 133 HOH HOH . F 4 HOH A 60 260 134 HOH HOH . F 4 HOH A 61 261 136 HOH HOH . F 4 HOH A 62 262 138 HOH HOH . F 4 HOH A 63 263 140 HOH HOH . F 4 HOH A 64 264 142 HOH HOH . F 4 HOH A 65 265 143 HOH HOH . F 4 HOH A 66 266 145 HOH HOH . F 4 HOH A 67 267 147 HOH HOH . F 4 HOH A 68 268 148 HOH HOH . F 4 HOH A 69 269 150 HOH HOH . F 4 HOH A 70 270 152 HOH HOH . F 4 HOH A 71 271 153 HOH HOH . F 4 HOH A 72 272 154 HOH HOH . F 4 HOH A 73 273 157 HOH HOH . F 4 HOH A 74 274 159 HOH HOH . F 4 HOH A 75 275 160 HOH HOH . F 4 HOH A 76 276 161 HOH HOH . F 4 HOH A 77 277 167 HOH HOH . F 4 HOH A 78 278 168 HOH HOH . F 4 HOH A 79 279 175 HOH HOH . F 4 HOH A 80 280 177 HOH HOH . F 4 HOH A 81 281 180 HOH HOH . F 4 HOH A 82 282 182 HOH HOH . F 4 HOH A 83 283 183 HOH HOH . F 4 HOH A 84 284 184 HOH HOH . F 4 HOH A 85 285 185 HOH HOH . F 4 HOH A 86 286 188 HOH HOH . F 4 HOH A 87 287 190 HOH HOH . F 4 HOH A 88 288 194 HOH HOH . F 4 HOH A 89 289 197 HOH HOH . F 4 HOH A 90 290 200 HOH HOH . F 4 HOH A 91 291 204 HOH HOH . F 4 HOH A 92 292 206 HOH HOH . F 4 HOH A 93 293 209 HOH HOH . F 4 HOH A 94 294 210 HOH HOH . F 4 HOH A 95 295 213 HOH HOH . F 4 HOH A 96 296 217 HOH HOH . F 4 HOH A 97 297 220 HOH HOH . F 4 HOH A 98 298 223 HOH HOH . F 4 HOH A 99 299 229 HOH HOH . F 4 HOH A 100 300 230 HOH HOH . F 4 HOH A 101 301 232 HOH HOH . G 4 HOH B 1 201 1 HOH HOH . G 4 HOH B 2 202 2 HOH HOH . G 4 HOH B 3 203 3 HOH HOH . G 4 HOH B 4 204 5 HOH HOH . G 4 HOH B 5 205 6 HOH HOH . G 4 HOH B 6 206 7 HOH HOH . G 4 HOH B 7 207 9 HOH HOH . G 4 HOH B 8 208 11 HOH HOH . G 4 HOH B 9 209 12 HOH HOH . G 4 HOH B 10 210 13 HOH HOH . G 4 HOH B 11 211 15 HOH HOH . G 4 HOH B 12 212 16 HOH HOH . G 4 HOH B 13 213 17 HOH HOH . G 4 HOH B 14 214 20 HOH HOH . G 4 HOH B 15 215 22 HOH HOH . G 4 HOH B 16 216 23 HOH HOH . G 4 HOH B 17 217 24 HOH HOH . G 4 HOH B 18 218 26 HOH HOH . G 4 HOH B 19 219 29 HOH HOH . G 4 HOH B 20 220 30 HOH HOH . G 4 HOH B 21 221 31 HOH HOH . G 4 HOH B 22 222 32 HOH HOH . G 4 HOH B 23 223 33 HOH HOH . G 4 HOH B 24 224 35 HOH HOH . G 4 HOH B 25 225 37 HOH HOH . G 4 HOH B 26 226 39 HOH HOH . G 4 HOH B 27 227 40 HOH HOH . G 4 HOH B 28 228 44 HOH HOH . G 4 HOH B 29 229 46 HOH HOH . G 4 HOH B 30 230 47 HOH HOH . G 4 HOH B 31 231 48 HOH HOH . G 4 HOH B 32 232 49 HOH HOH . G 4 HOH B 33 233 50 HOH HOH . G 4 HOH B 34 234 51 HOH HOH . G 4 HOH B 35 235 52 HOH HOH . G 4 HOH B 36 236 53 HOH HOH . G 4 HOH B 37 237 58 HOH HOH . G 4 HOH B 38 238 59 HOH HOH . G 4 HOH B 39 239 62 HOH HOH . G 4 HOH B 40 240 63 HOH HOH . G 4 HOH B 41 241 65 HOH HOH . G 4 HOH B 42 242 67 HOH HOH . G 4 HOH B 43 243 72 HOH HOH . G 4 HOH B 44 244 74 HOH HOH . G 4 HOH B 45 245 75 HOH HOH . G 4 HOH B 46 246 76 HOH HOH . G 4 HOH B 47 247 79 HOH HOH . G 4 HOH B 48 248 84 HOH HOH . G 4 HOH B 49 249 86 HOH HOH . G 4 HOH B 50 250 87 HOH HOH . G 4 HOH B 51 251 92 HOH HOH . G 4 HOH B 52 252 94 HOH HOH . G 4 HOH B 53 253 96 HOH HOH . G 4 HOH B 54 254 97 HOH HOH . G 4 HOH B 55 255 98 HOH HOH . G 4 HOH B 56 256 101 HOH HOH . G 4 HOH B 57 257 102 HOH HOH . G 4 HOH B 58 258 103 HOH HOH . G 4 HOH B 59 259 106 HOH HOH . G 4 HOH B 60 260 107 HOH HOH . G 4 HOH B 61 261 108 HOH HOH . G 4 HOH B 62 262 111 HOH HOH . G 4 HOH B 63 263 113 HOH HOH . G 4 HOH B 64 264 115 HOH HOH . G 4 HOH B 65 265 117 HOH HOH . G 4 HOH B 66 266 118 HOH HOH . G 4 HOH B 67 267 120 HOH HOH . G 4 HOH B 68 268 121 HOH HOH . G 4 HOH B 69 269 122 HOH HOH . G 4 HOH B 70 270 123 HOH HOH . G 4 HOH B 71 271 125 HOH HOH . G 4 HOH B 72 272 126 HOH HOH . G 4 HOH B 73 273 129 HOH HOH . G 4 HOH B 74 274 131 HOH HOH . G 4 HOH B 75 275 135 HOH HOH . G 4 HOH B 76 276 137 HOH HOH . G 4 HOH B 77 277 139 HOH HOH . G 4 HOH B 78 278 141 HOH HOH . G 4 HOH B 79 279 144 HOH HOH . G 4 HOH B 80 280 146 HOH HOH . G 4 HOH B 81 281 149 HOH HOH . G 4 HOH B 82 282 151 HOH HOH . G 4 HOH B 83 283 155 HOH HOH . G 4 HOH B 84 284 156 HOH HOH . G 4 HOH B 85 285 158 HOH HOH . G 4 HOH B 86 286 162 HOH HOH . G 4 HOH B 87 287 163 HOH HOH . G 4 HOH B 88 288 164 HOH HOH . G 4 HOH B 89 289 165 HOH HOH . G 4 HOH B 90 290 166 HOH HOH . G 4 HOH B 91 291 169 HOH HOH . G 4 HOH B 92 292 170 HOH HOH . G 4 HOH B 93 293 171 HOH HOH . G 4 HOH B 94 294 172 HOH HOH . G 4 HOH B 95 295 173 HOH HOH . G 4 HOH B 96 296 174 HOH HOH . G 4 HOH B 97 297 176 HOH HOH . G 4 HOH B 98 298 178 HOH HOH . G 4 HOH B 99 299 179 HOH HOH . G 4 HOH B 100 300 181 HOH HOH . G 4 HOH B 101 301 186 HOH HOH . G 4 HOH B 102 302 187 HOH HOH . G 4 HOH B 103 303 189 HOH HOH . G 4 HOH B 104 304 191 HOH HOH . G 4 HOH B 105 305 192 HOH HOH . G 4 HOH B 106 306 193 HOH HOH . G 4 HOH B 107 307 195 HOH HOH . G 4 HOH B 108 308 196 HOH HOH . G 4 HOH B 109 309 198 HOH HOH . G 4 HOH B 110 310 199 HOH HOH . G 4 HOH B 111 311 201 HOH HOH . G 4 HOH B 112 312 202 HOH HOH . G 4 HOH B 113 313 203 HOH HOH . G 4 HOH B 114 314 205 HOH HOH . G 4 HOH B 115 315 207 HOH HOH . G 4 HOH B 116 316 208 HOH HOH . G 4 HOH B 117 317 211 HOH HOH . G 4 HOH B 118 318 212 HOH HOH . G 4 HOH B 119 319 214 HOH HOH . G 4 HOH B 120 320 215 HOH HOH . G 4 HOH B 121 321 216 HOH HOH . G 4 HOH B 122 322 218 HOH HOH . G 4 HOH B 123 323 219 HOH HOH . G 4 HOH B 124 324 221 HOH HOH . G 4 HOH B 125 325 222 HOH HOH . G 4 HOH B 126 326 224 HOH HOH . G 4 HOH B 127 327 225 HOH HOH . G 4 HOH B 128 328 226 HOH HOH . G 4 HOH B 129 329 227 HOH HOH . G 4 HOH B 130 330 228 HOH HOH . G 4 HOH B 131 331 231 HOH HOH . G 4 HOH B 132 332 233 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.086 _atom_site.Cartn_y -24.137 _atom_site.Cartn_z 29.409 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #