data_4HIU # _model_server_result.job_id FmFDT7n0cj1cXI8hl8I-Hw _model_server_result.datetime_utc '2024-12-22 06:43:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 4HIU # _exptl.entry_id 4HIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HIU _cell.length_a 139.732 _cell.length_b 139.732 _cell.length_c 139.732 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 4 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 110 n n O3P HOP3 C5P sing 111 n n P O1P C5P doub 112 n n P O2P C5P sing 113 n n P O5' C5P sing 114 n n O2P HOP2 C5P sing 115 n n O5' C5' C5P sing 116 n n C5' C4' C5P sing 117 n n C5' "H5'1" C5P sing 118 n n C5' "H5'2" C5P sing 119 n n C4' O4' C5P sing 120 n n C4' C3' C5P sing 121 n n C4' H4' C5P sing 122 n n O4' C1' C5P sing 123 n n C3' O3' C5P sing 124 n n C3' C2' C5P sing 125 n n C3' H3' C5P sing 126 n n O3' HO3' C5P sing 127 n n C2' O2' C5P sing 128 n n C2' C1' C5P sing 129 n n C2' "H2'1" C5P sing 130 n n O2' HO2' C5P sing 131 n n C1' N1 C5P sing 132 n n C1' H1' C5P sing 133 n n N1 C2 C5P sing 134 n n N1 C6 C5P sing 135 n n C2 N3 C5P sing 136 n n C2 O2 C5P doub 137 n n N3 C4 C5P doub 138 n n C4 C5 C5P sing 139 n n C4 N4 C5P sing 140 n n C5 C6 C5P doub 141 n n C5 H5 C5P sing 142 n n C6 H6 C5P sing 143 n n N4 HN41 C5P sing 144 n n N4 HN42 C5P sing 145 n n # _atom_sites.entry_id 4HIU _atom_sites.fract_transf_matrix[1][1] 0.007157 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 300 300 C5P C5P . C 3 5GP A 1 301 301 5GP 5GP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . B 2 5.943 37.711 -0.468 1 171.62 ? O3P C5P 300 A 1 HETATM 2 P P C5P . . . B 2 4.581 37.319 -0.038 1 165.26 ? P C5P 300 A 1 HETATM 3 O O1P C5P . . . B 2 3.588 38.406 -0.089 1 154.91 ? O1P C5P 300 A 1 HETATM 4 O O2P C5P . . . B 2 4.15 35.983 -0.521 1 178.49 ? O2P C5P 300 A 1 HETATM 5 O O5' C5P . . . B 2 4.805 37.022 1.512 1 162.84 ? O5' C5P 300 A 1 HETATM 6 C C5' C5P . . . B 2 5.777 36.062 1.99 1 153.73 ? C5' C5P 300 A 1 HETATM 7 C C4' C5P . . . B 2 5.513 35.827 3.487 1 144.77 ? C4' C5P 300 A 1 HETATM 8 O O4' C5P . . . B 2 6.403 36.577 4.379 1 155.61 ? O4' C5P 300 A 1 HETATM 9 C C3' C5P . . . B 2 4.109 36.205 3.955 1 121.04 ? C3' C5P 300 A 1 HETATM 10 O O3' C5P . . . B 2 3.802 35.349 5.059 1 101.97 ? O3' C5P 300 A 1 HETATM 11 C C2' C5P . . . B 2 4.243 37.644 4.418 1 116.54 ? C2' C5P 300 A 1 HETATM 12 O O2' C5P . . . B 2 3.359 37.861 5.493 1 106.6 ? O2' C5P 300 A 1 HETATM 13 C C1' C5P . . . B 2 5.676 37.729 4.956 1 130.86 ? C1' C5P 300 A 1 HETATM 14 N N1 C5P . . . B 2 6.405 39.029 4.676 1 124.69 ? N1 C5P 300 A 1 HETATM 15 C C2 C5P . . . B 2 7.081 39.636 5.666 1 129.11 ? C2 C5P 300 A 1 HETATM 16 N N3 C5P . . . B 2 7.786 40.846 5.441 1 135.32 ? N3 C5P 300 A 1 HETATM 17 C C4 C5P . . . B 2 7.811 41.451 4.169 1 132.9 ? C4 C5P 300 A 1 HETATM 18 C C5 C5P . . . B 2 7.113 40.808 3.148 1 125.57 ? C5 C5P 300 A 1 HETATM 19 C C6 C5P . . . B 2 6.426 39.618 3.395 1 121.89 ? C6 C5P 300 A 1 HETATM 20 O O2 C5P . . . B 2 7.077 39.133 6.788 1 136.04 ? O2 C5P 300 A 1 HETATM 21 N N4 C5P . . . B 2 8.487 42.599 3.957 1 126.73 ? N4 C5P 300 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 625 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #