data_4HK8 # _model_server_result.job_id HAOueNmCkcgYobg_6m2dwg _model_server_result.datetime_utc '2024-11-19 17:42:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":207}' # _entry.id 4HK8 # _exptl.entry_id 4HK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HK8 _cell.length_a 38.492 _cell.length_b 45.526 _cell.length_c 111.417 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 XYP XYP C1 O1 . O4 HO4 . sing 2 ? 2 3 2 XYP XYP C1 O1 . O4 HO4 . sing 3 ? 2 4 3 XYP XYP C1 O1 . O4 HO4 . sing 4 ? 2 5 4 XYP XYP C1 O1 . O4 HO4 . sing 5 ? 2 6 5 XYP XYP C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B XYP 1 B 1 XYP A 1125 XYP 2 n B XYP 2 B 2 XYP A 1124 XYP 2 n B XYP 3 B 3 XYP A 1123 XYP 2 n B XYP 4 B 4 XYP A 1122 XYP 2 n B XYP 5 B 5 XYP A 1121 XYP 2 n B XYP 6 B 6 XYP A 1120 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 XYP . B XYP 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale2 B O4 XYP . B XYP 2 1_555 B C1 XYP . B XYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? covale ? covale3 B O4 XYP . B XYP 3 1_555 B C1 XYP . B XYP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 B O4 XYP . B XYP 4 1_555 B C1 XYP . B XYP 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale5 B O4 XYP . B XYP 5 1_555 B C1 XYP . B XYP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 4HK8 _atom_sites.fract_transf_matrix[1][1] 0.025979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 207 1230 GOL GOL . D 3 GOL A 1 208 1231 GOL GOL . E 3 GOL A 1 209 1232 GOL GOL . F 3 GOL A 1 210 1233 GOL GOL . G 3 GOL A 1 211 1234 GOL GOL . H 4 CIT A 1 212 1240 CIT CIT . I 5 HOH A 1 301 3 HOH HOH . I 5 HOH A 2 302 4 HOH HOH . I 5 HOH A 3 303 6 HOH HOH . I 5 HOH A 4 304 7 HOH HOH . I 5 HOH A 5 305 11 HOH HOH . I 5 HOH A 6 306 12 HOH HOH . I 5 HOH A 7 307 13 HOH HOH . I 5 HOH A 8 308 14 HOH HOH . I 5 HOH A 9 309 15 HOH HOH . I 5 HOH A 10 310 17 HOH HOH . I 5 HOH A 11 311 22 HOH HOH . I 5 HOH A 12 312 25 HOH HOH . I 5 HOH A 13 313 26 HOH HOH . I 5 HOH A 14 314 28 HOH HOH . I 5 HOH A 15 315 29 HOH HOH . I 5 HOH A 16 316 31 HOH HOH . I 5 HOH A 17 317 32 HOH HOH . I 5 HOH A 18 318 33 HOH HOH . I 5 HOH A 19 319 34 HOH HOH . I 5 HOH A 20 320 35 HOH HOH . I 5 HOH A 21 321 36 HOH HOH . I 5 HOH A 22 322 37 HOH HOH . I 5 HOH A 23 323 39 HOH HOH . I 5 HOH A 24 324 40 HOH HOH . I 5 HOH A 25 325 41 HOH HOH . I 5 HOH A 26 326 42 HOH HOH . I 5 HOH A 27 327 43 HOH HOH . I 5 HOH A 28 328 44 HOH HOH . I 5 HOH A 29 329 45 HOH HOH . I 5 HOH A 30 330 46 HOH HOH . I 5 HOH A 31 331 48 HOH HOH . I 5 HOH A 32 332 49 HOH HOH . I 5 HOH A 33 333 50 HOH HOH . I 5 HOH A 34 334 51 HOH HOH . I 5 HOH A 35 335 53 HOH HOH . I 5 HOH A 36 336 55 HOH HOH . I 5 HOH A 37 337 56 HOH HOH . I 5 HOH A 38 338 57 HOH HOH . I 5 HOH A 39 339 58 HOH HOH . I 5 HOH A 40 340 59 HOH HOH . I 5 HOH A 41 341 60 HOH HOH . I 5 HOH A 42 342 61 HOH HOH . I 5 HOH A 43 343 63 HOH HOH . I 5 HOH A 44 344 64 HOH HOH . I 5 HOH A 45 345 65 HOH HOH . I 5 HOH A 46 346 66 HOH HOH . I 5 HOH A 47 347 67 HOH HOH . I 5 HOH A 48 348 68 HOH HOH . I 5 HOH A 49 349 69 HOH HOH . I 5 HOH A 50 350 70 HOH HOH . I 5 HOH A 51 351 71 HOH HOH . I 5 HOH A 52 352 73 HOH HOH . I 5 HOH A 53 353 74 HOH HOH . I 5 HOH A 54 354 80 HOH HOH . I 5 HOH A 55 355 81 HOH HOH . I 5 HOH A 56 356 82 HOH HOH . I 5 HOH A 57 357 84 HOH HOH . I 5 HOH A 58 358 85 HOH HOH . I 5 HOH A 59 359 86 HOH HOH . I 5 HOH A 60 360 87 HOH HOH . I 5 HOH A 61 361 88 HOH HOH . I 5 HOH A 62 362 89 HOH HOH . I 5 HOH A 63 363 90 HOH HOH . I 5 HOH A 64 364 91 HOH HOH . I 5 HOH A 65 365 92 HOH HOH . I 5 HOH A 66 366 94 HOH HOH . I 5 HOH A 67 367 95 HOH HOH . I 5 HOH A 68 368 96 HOH HOH . I 5 HOH A 69 369 98 HOH HOH . I 5 HOH A 70 370 99 HOH HOH . I 5 HOH A 71 371 100 HOH HOH . I 5 HOH A 72 372 101 HOH HOH . I 5 HOH A 73 373 102 HOH HOH . I 5 HOH A 74 374 103 HOH HOH . I 5 HOH A 75 375 104 HOH HOH . I 5 HOH A 76 376 106 HOH HOH . I 5 HOH A 77 377 107 HOH HOH . I 5 HOH A 78 378 108 HOH HOH . I 5 HOH A 79 379 109 HOH HOH . I 5 HOH A 80 380 111 HOH HOH . I 5 HOH A 81 381 112 HOH HOH . I 5 HOH A 82 382 113 HOH HOH . I 5 HOH A 83 383 114 HOH HOH . I 5 HOH A 84 384 115 HOH HOH . I 5 HOH A 85 385 116 HOH HOH . I 5 HOH A 86 386 119 HOH HOH . I 5 HOH A 87 387 120 HOH HOH . I 5 HOH A 88 388 121 HOH HOH . I 5 HOH A 89 389 122 HOH HOH . I 5 HOH A 90 390 125 HOH HOH . I 5 HOH A 91 391 126 HOH HOH . I 5 HOH A 92 392 127 HOH HOH . I 5 HOH A 93 393 128 HOH HOH . I 5 HOH A 94 394 129 HOH HOH . I 5 HOH A 95 395 131 HOH HOH . I 5 HOH A 96 396 133 HOH HOH . I 5 HOH A 97 397 134 HOH HOH . I 5 HOH A 98 398 135 HOH HOH . I 5 HOH A 99 399 138 HOH HOH . I 5 HOH A 100 400 139 HOH HOH . I 5 HOH A 101 401 141 HOH HOH . I 5 HOH A 102 402 142 HOH HOH . I 5 HOH A 103 403 143 HOH HOH . I 5 HOH A 104 404 144 HOH HOH . I 5 HOH A 105 405 145 HOH HOH . I 5 HOH A 106 406 146 HOH HOH . I 5 HOH A 107 407 147 HOH HOH . I 5 HOH A 108 408 148 HOH HOH . I 5 HOH A 109 409 149 HOH HOH . I 5 HOH A 110 410 151 HOH HOH . I 5 HOH A 111 411 152 HOH HOH . I 5 HOH A 112 412 153 HOH HOH . I 5 HOH A 113 413 154 HOH HOH . I 5 HOH A 114 414 155 HOH HOH . I 5 HOH A 115 415 156 HOH HOH . I 5 HOH A 116 416 157 HOH HOH . I 5 HOH A 117 417 160 HOH HOH . I 5 HOH A 118 418 161 HOH HOH . I 5 HOH A 119 419 162 HOH HOH . I 5 HOH A 120 420 164 HOH HOH . I 5 HOH A 121 421 165 HOH HOH . I 5 HOH A 122 422 166 HOH HOH . I 5 HOH A 123 423 167 HOH HOH . I 5 HOH A 124 424 168 HOH HOH . I 5 HOH A 125 425 170 HOH HOH . I 5 HOH A 126 426 171 HOH HOH . I 5 HOH A 127 427 172 HOH HOH . I 5 HOH A 128 428 173 HOH HOH . I 5 HOH A 129 429 174 HOH HOH . I 5 HOH A 130 430 175 HOH HOH . I 5 HOH A 131 431 176 HOH HOH . I 5 HOH A 132 432 177 HOH HOH . I 5 HOH A 133 433 178 HOH HOH . I 5 HOH A 134 434 179 HOH HOH . I 5 HOH A 135 435 180 HOH HOH . I 5 HOH A 136 436 181 HOH HOH . I 5 HOH A 137 437 182 HOH HOH . I 5 HOH A 138 438 183 HOH HOH . I 5 HOH A 139 439 184 HOH HOH . I 5 HOH A 140 440 185 HOH HOH . I 5 HOH A 141 441 186 HOH HOH . I 5 HOH A 142 442 187 HOH HOH . I 5 HOH A 143 443 188 HOH HOH . I 5 HOH A 144 444 190 HOH HOH . I 5 HOH A 145 445 194 HOH HOH . I 5 HOH A 146 446 195 HOH HOH . I 5 HOH A 147 447 197 HOH HOH . I 5 HOH A 148 448 198 HOH HOH . I 5 HOH A 149 449 199 HOH HOH . I 5 HOH A 150 450 200 HOH HOH . I 5 HOH A 151 451 201 HOH HOH . I 5 HOH A 152 452 202 HOH HOH . I 5 HOH A 153 453 203 HOH HOH . I 5 HOH A 154 454 204 HOH HOH . I 5 HOH A 155 455 205 HOH HOH . I 5 HOH A 156 456 206 HOH HOH . I 5 HOH A 157 457 207 HOH HOH . I 5 HOH A 158 458 210 HOH HOH . I 5 HOH A 159 459 211 HOH HOH . I 5 HOH A 160 460 214 HOH HOH . I 5 HOH A 161 461 215 HOH HOH . I 5 HOH A 162 462 217 HOH HOH . I 5 HOH A 163 463 218 HOH HOH . I 5 HOH A 164 464 219 HOH HOH . I 5 HOH A 165 465 220 HOH HOH . I 5 HOH A 166 466 221 HOH HOH . I 5 HOH A 167 467 222 HOH HOH . I 5 HOH A 168 468 225 HOH HOH . I 5 HOH A 169 469 226 HOH HOH . I 5 HOH A 170 470 227 HOH HOH . I 5 HOH A 171 471 228 HOH HOH . I 5 HOH A 172 472 232 HOH HOH . I 5 HOH A 173 473 234 HOH HOH . I 5 HOH A 174 474 237 HOH HOH . I 5 HOH A 175 475 238 HOH HOH . I 5 HOH A 176 476 239 HOH HOH . I 5 HOH A 177 477 240 HOH HOH . I 5 HOH A 178 478 241 HOH HOH . I 5 HOH A 179 479 242 HOH HOH . I 5 HOH A 180 480 243 HOH HOH . I 5 HOH A 181 481 245 HOH HOH . I 5 HOH A 182 482 247 HOH HOH . I 5 HOH A 183 483 249 HOH HOH . I 5 HOH A 184 484 250 HOH HOH . I 5 HOH A 185 485 251 HOH HOH . I 5 HOH A 186 486 252 HOH HOH . I 5 HOH A 187 487 253 HOH HOH . I 5 HOH A 188 488 257 HOH HOH . I 5 HOH A 189 489 260 HOH HOH . I 5 HOH A 190 490 262 HOH HOH . I 5 HOH A 191 491 263 HOH HOH . I 5 HOH A 192 492 265 HOH HOH . I 5 HOH A 193 493 267 HOH HOH . I 5 HOH A 194 494 268 HOH HOH . I 5 HOH A 195 495 270 HOH HOH . I 5 HOH A 196 496 272 HOH HOH . I 5 HOH A 197 497 274 HOH HOH . I 5 HOH A 198 498 275 HOH HOH . I 5 HOH A 199 499 285 HOH HOH . I 5 HOH A 200 500 287 HOH HOH . I 5 HOH A 201 501 288 HOH HOH . I 5 HOH A 202 502 289 HOH HOH . I 5 HOH A 203 503 290 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 13.824 2.026 -28.223 1 18.67 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . C 3 12.419 2.053 -28.015 1 16.68 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . C 3 14.576 3.018 -27.336 1 19.83 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . C 3 14.327 4.364 -27.708 1 21.09 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . C 3 16.08 2.707 -27.352 1 17.83 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . C 3 16.822 3.336 -28.389 1 17.16 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #