data_4HKN
#
_model_server_result.job_id            Bg0vbgQM7kY9jyXuigY90Q 
_model_server_result.datetime_utc      '2024-11-28 18:25:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hkn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1204}' 
#
_entry.id    4HKN 
#
_exptl.entry_id    4HKN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              286.236 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HKN 
_cell.length_a            67.28 
_cell.length_b            67.28 
_cell.length_c            118.06 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HKN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
#
_chem_comp.formula           'C15 H10 O6' 
_chem_comp.formula_weight    286.236 
_chem_comp.id                LU2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Luteolin 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 LU2 doub 194 n y 
C1 C6 LU2 sing 195 n y 
C1 H1 LU2 sing 196 n n 
O1 C2 LU2 sing 197 n n 
O1 HO1 LU2 sing 198 n n 
C2 C3 LU2 sing 199 n y 
C4 O2 LU2 sing 200 n n 
O2 HO2 LU2 sing 201 n n 
C3 C4 LU2 doub 202 n y 
C3 H3 LU2 sing 203 n n 
C7 O3 LU2 doub 204 n n 
C5 C4 LU2 sing 205 n y 
O4 C6 LU2 sing 206 n n 
O4 C9 LU2 sing 207 n n 
C6 C5 LU2 doub 208 n y 
C5 C7 LU2 sing 209 n n 
C12 O5 LU2 sing 210 n n 
O5 HO5 LU2 sing 211 n n 
O6 C13 LU2 sing 212 n n 
O6 HO6 LU2 sing 213 n n 
C8 C7 LU2 sing 214 n n 
C9 C8 LU2 doub 215 n n 
C8 H8 LU2 sing 216 n n 
C10 C9 LU2 sing 217 n n 
C15 C10 LU2 doub 218 n y 
C10 C11 LU2 sing 219 n y 
C12 C11 LU2 doub 220 n y 
C11 H11 LU2 sing 221 n n 
C13 C12 LU2 sing 222 n y 
C14 C13 LU2 doub 223 n y 
C14 C15 LU2 sing 224 n y 
C14 H14 LU2 sing 225 n n 
C15 H15 LU2 sing 226 n n 
#
_atom_sites.entry_id                     4HKN 
_atom_sites.fract_transf_matrix[1][1]    0.014863 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 1201 1 ZN ZN . 
D 4 SO4 A 1 1202 1 SO4 SO4 . 
E 4 SO4 A 1 1203 3 SO4 SO4 . 
F 5 LU2 A 1 1204 1 LU2 LU2 . 
G 4 SO4 C 1 1201 2 SO4 SO4 . 
H 6 HOH A 1 1301 2 HOH HOH . 
H 6 HOH A 2 1302 3 HOH HOH . 
H 6 HOH A 3 1303 4 HOH HOH . 
H 6 HOH A 4 1304 5 HOH HOH . 
H 6 HOH A 5 1305 6 HOH HOH . 
H 6 HOH A 6 1306 7 HOH HOH . 
H 6 HOH A 7 1307 8 HOH HOH . 
H 6 HOH A 8 1308 9 HOH HOH . 
H 6 HOH A 9 1309 10 HOH HOH . 
H 6 HOH A 10 1310 11 HOH HOH . 
H 6 HOH A 11 1311 12 HOH HOH . 
H 6 HOH A 12 1312 13 HOH HOH . 
H 6 HOH A 13 1313 14 HOH HOH . 
H 6 HOH A 14 1314 18 HOH HOH . 
H 6 HOH A 15 1315 19 HOH HOH . 
H 6 HOH A 16 1316 21 HOH HOH . 
H 6 HOH A 17 1317 22 HOH HOH . 
H 6 HOH A 18 1318 23 HOH HOH . 
H 6 HOH A 19 1319 25 HOH HOH . 
H 6 HOH A 20 1320 26 HOH HOH . 
H 6 HOH A 21 1321 27 HOH HOH . 
H 6 HOH A 22 1322 28 HOH HOH . 
H 6 HOH A 23 1323 29 HOH HOH . 
H 6 HOH A 24 1324 30 HOH HOH . 
H 6 HOH A 25 1325 31 HOH HOH . 
H 6 HOH A 26 1326 34 HOH HOH . 
H 6 HOH A 27 1327 36 HOH HOH . 
H 6 HOH A 28 1328 37 HOH HOH . 
H 6 HOH A 29 1329 38 HOH HOH . 
H 6 HOH A 30 1330 40 HOH HOH . 
H 6 HOH A 31 1331 41 HOH HOH . 
H 6 HOH A 32 1332 44 HOH HOH . 
H 6 HOH A 33 1333 45 HOH HOH . 
H 6 HOH A 34 1334 46 HOH HOH . 
H 6 HOH A 35 1335 48 HOH HOH . 
H 6 HOH A 36 1336 50 HOH HOH . 
H 6 HOH A 37 1337 51 HOH HOH . 
H 6 HOH A 38 1338 52 HOH HOH . 
H 6 HOH A 39 1339 53 HOH HOH . 
H 6 HOH A 40 1340 54 HOH HOH . 
H 6 HOH A 41 1341 55 HOH HOH . 
H 6 HOH A 42 1342 56 HOH HOH . 
H 6 HOH A 43 1343 57 HOH HOH . 
H 6 HOH A 44 1344 58 HOH HOH . 
H 6 HOH A 45 1345 59 HOH HOH . 
H 6 HOH A 46 1346 60 HOH HOH . 
H 6 HOH A 47 1347 62 HOH HOH . 
H 6 HOH A 48 1348 63 HOH HOH . 
H 6 HOH A 49 1349 64 HOH HOH . 
H 6 HOH A 50 1350 65 HOH HOH . 
H 6 HOH A 51 1351 66 HOH HOH . 
H 6 HOH A 52 1352 67 HOH HOH . 
H 6 HOH A 53 1353 68 HOH HOH . 
H 6 HOH A 54 1354 70 HOH HOH . 
H 6 HOH A 55 1355 71 HOH HOH . 
H 6 HOH A 56 1356 72 HOH HOH . 
H 6 HOH A 57 1357 73 HOH HOH . 
H 6 HOH A 58 1358 74 HOH HOH . 
H 6 HOH A 59 1359 75 HOH HOH . 
H 6 HOH A 60 1360 77 HOH HOH . 
H 6 HOH A 61 1361 80 HOH HOH . 
H 6 HOH A 62 1362 81 HOH HOH . 
H 6 HOH A 63 1363 82 HOH HOH . 
H 6 HOH A 64 1364 83 HOH HOH . 
H 6 HOH A 65 1365 86 HOH HOH . 
H 6 HOH A 66 1366 87 HOH HOH . 
H 6 HOH A 67 1367 88 HOH HOH . 
H 6 HOH A 68 1368 89 HOH HOH . 
H 6 HOH A 69 1369 90 HOH HOH . 
I 6 HOH C 1 1301 1 HOH HOH . 
I 6 HOH C 2 1302 15 HOH HOH . 
I 6 HOH C 3 1303 16 HOH HOH . 
I 6 HOH C 4 1304 20 HOH HOH . 
I 6 HOH C 5 1305 24 HOH HOH . 
I 6 HOH C 6 1306 32 HOH HOH . 
I 6 HOH C 7 1307 33 HOH HOH . 
I 6 HOH C 8 1308 39 HOH HOH . 
I 6 HOH C 9 1309 42 HOH HOH . 
I 6 HOH C 10 1310 43 HOH HOH . 
I 6 HOH C 11 1311 47 HOH HOH . 
I 6 HOH C 12 1312 49 HOH HOH . 
I 6 HOH C 13 1313 61 HOH HOH . 
I 6 HOH C 14 1314 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LU2 . . . F 5 5.854 -12.408 -13.59 1 29.47 ? C1 LU2 1204 A 1 
HETATM 2 O O1 LU2 . . . F 5 7.485 -12.725 -15.332 1 31.38 ? O1 LU2 1204 A 1 
HETATM 3 C C2 LU2 . . . F 5 6.176 -12.589 -14.946 1 30.81 ? C2 LU2 1204 A 1 
HETATM 4 O O2 LU2 . . . F 5 2.786 -12.455 -16.429 1 26.88 ? O2 LU2 1204 A 1 
HETATM 5 C C3 LU2 . . . F 5 5.151 -12.598 -15.904 1 30.06 ? C3 LU2 1204 A 1 
HETATM 6 O O3 LU2 . . . F 5 1.174 -12.232 -14.612 1 25.69 ? O3 LU2 1204 A 1 
HETATM 7 C C4 LU2 . . . F 5 3.809 -12.443 -15.519 1 29.66 ? C4 LU2 1204 A 1 
HETATM 8 O O4 LU2 . . . F 5 4.201 -12.045 -11.907 1 30.7 ? O4 LU2 1204 A 1 
HETATM 9 C C5 LU2 . . . F 5 3.461 -12.268 -14.173 1 27.62 ? C5 LU2 1204 A 1 
HETATM 10 O O5 LU2 . . . F 5 0.604 -10.282 -7.446 1 33.4 ? O5 LU2 1204 A 1 
HETATM 11 C C6 LU2 . . . F 5 4.506 -12.254 -13.23 1 28.91 ? C6 LU2 1204 A 1 
HETATM 12 O O6 LU2 . . . F 5 2.716 -10.992 -5.924 1 32.01 ? O6 LU2 1204 A 1 
HETATM 13 C C7 LU2 . . . F 5 2.11 -12.124 -13.786 1 28.55 ? C7 LU2 1204 A 1 
HETATM 14 C C8 LU2 . . . F 5 1.848 -11.944 -12.422 1 28.19 ? C8 LU2 1204 A 1 
HETATM 15 C C9 LU2 . . . F 5 2.902 -11.884 -11.489 1 29.38 ? C9 LU2 1204 A 1 
HETATM 16 C C10 LU2 . . . F 5 2.797 -11.676 -10.105 1 30.74 ? C10 LU2 1204 A 1 
HETATM 17 C C11 LU2 . . . F 5 1.681 -11.082 -9.484 1 30.6 ? C11 LU2 1204 A 1 
HETATM 18 C C12 LU2 . . . F 5 1.677 -10.857 -8.091 1 31.94 ? C12 LU2 1204 A 1 
HETATM 19 C C13 LU2 . . . F 5 2.77 -11.236 -7.291 1 32.6 ? C13 LU2 1204 A 1 
HETATM 20 C C14 LU2 . . . F 5 3.876 -11.821 -7.909 1 31.19 ? C14 LU2 1204 A 1 
HETATM 21 C C15 LU2 . . . F 5 3.892 -12.03 -9.295 1 28.9 ? C15 LU2 1204 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#