data_4HKP # _model_server_result.job_id 0AozIAcNcfH5CbG3D2JiqQ _model_server_result.datetime_utc '2024-11-23 16:23:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hkp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4HKP # _exptl.entry_id 4HKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.9 _cell.angle_gamma 90 _cell.entry_id 4HKP _cell.length_a 69.29 _cell.length_b 61.775 _cell.length_c 70.523 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 166 n n C1 C2 GOL sing 167 n n C1 H11 GOL sing 168 n n C1 H12 GOL sing 169 n n O1 HO1 GOL sing 170 n n C2 O2 GOL sing 171 n n C2 C3 GOL sing 172 n n C2 H2 GOL sing 173 n n O2 HO2 GOL sing 174 n n C3 O3 GOL sing 175 n n C3 H31 GOL sing 176 n n C3 H32 GOL sing 177 n n O3 HO3 GOL sing 178 n n # _atom_sites.entry_id 4HKP _atom_sites.fract_transf_matrix[1][1] 0.014432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006096 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 301 1 GOL GOL . D 2 GOL A 1 302 1 GOL GOL . E 2 GOL A 1 303 1 GOL GOL . F 3 TKW A 1 304 1 TKW TKW . G 4 16B A 1 305 1 16B DRG . H 2 GOL B 1 301 1 GOL GOL . I 2 GOL B 1 302 1 GOL GOL . J 2 GOL B 1 303 1 GOL GOL . K 3 TKW B 1 304 1 TKW TKW . L 5 HOH A 1 401 2 HOH HOH . L 5 HOH A 2 402 4 HOH HOH . L 5 HOH A 3 403 5 HOH HOH . L 5 HOH A 4 404 9 HOH HOH . L 5 HOH A 5 405 11 HOH HOH . L 5 HOH A 6 406 12 HOH HOH . L 5 HOH A 7 407 16 HOH HOH . L 5 HOH A 8 408 17 HOH HOH . L 5 HOH A 9 409 21 HOH HOH . L 5 HOH A 10 410 22 HOH HOH . L 5 HOH A 11 411 23 HOH HOH . L 5 HOH A 12 412 24 HOH HOH . L 5 HOH A 13 413 28 HOH HOH . L 5 HOH A 14 414 29 HOH HOH . L 5 HOH A 15 415 30 HOH HOH . L 5 HOH A 16 416 34 HOH HOH . L 5 HOH A 17 417 36 HOH HOH . L 5 HOH A 18 418 37 HOH HOH . L 5 HOH A 19 419 51 HOH HOH . L 5 HOH A 20 420 53 HOH HOH . L 5 HOH A 21 421 57 HOH HOH . L 5 HOH A 22 422 65 HOH HOH . L 5 HOH A 23 423 67 HOH HOH . L 5 HOH A 24 424 68 HOH HOH . L 5 HOH A 25 425 71 HOH HOH . L 5 HOH A 26 426 72 HOH HOH . L 5 HOH A 27 427 73 HOH HOH . L 5 HOH A 28 428 76 HOH HOH . L 5 HOH A 29 429 82 HOH HOH . L 5 HOH A 30 430 88 HOH HOH . L 5 HOH A 31 431 89 HOH HOH . L 5 HOH A 32 432 90 HOH HOH . L 5 HOH A 33 433 91 HOH HOH . L 5 HOH A 34 434 99 HOH HOH . L 5 HOH A 35 435 100 HOH HOH . L 5 HOH A 36 436 103 HOH HOH . L 5 HOH A 37 437 105 HOH HOH . L 5 HOH A 38 438 106 HOH HOH . L 5 HOH A 39 439 119 HOH HOH . L 5 HOH A 40 440 121 HOH HOH . L 5 HOH A 41 441 124 HOH HOH . L 5 HOH A 42 442 127 HOH HOH . L 5 HOH A 43 443 130 HOH HOH . L 5 HOH A 44 444 145 HOH HOH . L 5 HOH A 45 445 146 HOH HOH . L 5 HOH A 46 446 147 HOH HOH . L 5 HOH A 47 447 149 HOH HOH . L 5 HOH A 48 448 154 HOH HOH . L 5 HOH A 49 449 155 HOH HOH . L 5 HOH A 50 450 161 HOH HOH . L 5 HOH A 51 451 165 HOH HOH . L 5 HOH A 52 452 168 HOH HOH . L 5 HOH A 53 453 169 HOH HOH . L 5 HOH A 54 454 173 HOH HOH . L 5 HOH A 55 455 175 HOH HOH . L 5 HOH A 56 456 177 HOH HOH . L 5 HOH A 57 457 195 HOH HOH . L 5 HOH A 58 458 219 HOH HOH . L 5 HOH A 59 459 226 HOH HOH . L 5 HOH A 60 460 232 HOH HOH . L 5 HOH A 61 461 245 HOH HOH . L 5 HOH A 62 462 249 HOH HOH . L 5 HOH A 63 463 253 HOH HOH . L 5 HOH A 64 464 285 HOH HOH . L 5 HOH A 65 465 286 HOH HOH . L 5 HOH A 66 466 290 HOH HOH . L 5 HOH A 67 467 295 HOH HOH . L 5 HOH A 68 468 297 HOH HOH . L 5 HOH A 69 469 301 HOH HOH . L 5 HOH A 70 470 305 HOH HOH . L 5 HOH A 71 471 306 HOH HOH . L 5 HOH A 72 472 310 HOH HOH . L 5 HOH A 73 473 321 HOH HOH . L 5 HOH A 74 474 328 HOH HOH . L 5 HOH A 75 475 333 HOH HOH . L 5 HOH A 76 476 334 HOH HOH . L 5 HOH A 77 477 347 HOH HOH . L 5 HOH A 78 478 356 HOH HOH . L 5 HOH A 79 479 357 HOH HOH . L 5 HOH A 80 480 359 HOH HOH . L 5 HOH A 81 481 368 HOH HOH . L 5 HOH A 82 482 379 HOH HOH . L 5 HOH A 83 483 388 HOH HOH . L 5 HOH A 84 484 394 HOH HOH . L 5 HOH A 85 485 422 HOH HOH . L 5 HOH A 86 486 432 HOH HOH . L 5 HOH A 87 487 464 HOH HOH . L 5 HOH A 88 488 465 HOH HOH . L 5 HOH A 89 489 491 HOH HOH . L 5 HOH A 90 490 499 HOH HOH . L 5 HOH A 91 491 546 HOH HOH . L 5 HOH A 92 492 586 HOH HOH . L 5 HOH A 93 493 593 HOH HOH . L 5 HOH A 94 494 596 HOH HOH . L 5 HOH A 95 495 604 HOH HOH . L 5 HOH A 96 496 623 HOH HOH . L 5 HOH A 97 497 631 HOH HOH . L 5 HOH A 98 498 632 HOH HOH . L 5 HOH A 99 499 633 HOH HOH . L 5 HOH A 100 500 634 HOH HOH . L 5 HOH A 101 501 636 HOH HOH . L 5 HOH A 102 502 637 HOH HOH . L 5 HOH A 103 503 638 HOH HOH . L 5 HOH A 104 504 640 HOH HOH . L 5 HOH A 105 505 641 HOH HOH . L 5 HOH A 106 506 643 HOH HOH . L 5 HOH A 107 507 644 HOH HOH . L 5 HOH A 108 508 646 HOH HOH . L 5 HOH A 109 509 647 HOH HOH . L 5 HOH A 110 510 648 HOH HOH . L 5 HOH A 111 511 651 HOH HOH . L 5 HOH A 112 512 652 HOH HOH . L 5 HOH A 113 513 655 HOH HOH . L 5 HOH A 114 514 656 HOH HOH . L 5 HOH A 115 515 661 HOH HOH . L 5 HOH A 116 516 662 HOH HOH . L 5 HOH A 117 517 663 HOH HOH . L 5 HOH A 118 518 666 HOH HOH . L 5 HOH A 119 519 667 HOH HOH . L 5 HOH A 120 520 669 HOH HOH . L 5 HOH A 121 521 670 HOH HOH . L 5 HOH A 122 522 671 HOH HOH . L 5 HOH A 123 523 672 HOH HOH . L 5 HOH A 124 524 680 HOH HOH . L 5 HOH A 125 525 681 HOH HOH . L 5 HOH A 126 526 684 HOH HOH . L 5 HOH A 127 527 686 HOH HOH . L 5 HOH A 128 528 688 HOH HOH . L 5 HOH A 129 529 691 HOH HOH . L 5 HOH A 130 530 692 HOH HOH . L 5 HOH A 131 531 693 HOH HOH . L 5 HOH A 132 532 696 HOH HOH . L 5 HOH A 133 533 697 HOH HOH . L 5 HOH A 134 534 1 HOH HOH . L 5 HOH A 135 535 2 HOH HOH . L 5 HOH A 136 536 5 HOH HOH . L 5 HOH A 137 537 8 HOH HOH . L 5 HOH A 138 538 48 HOH HOH . L 5 HOH A 139 539 63 HOH HOH . L 5 HOH A 140 540 67 HOH HOH . L 5 HOH A 141 541 273 HOH HOH . L 5 HOH A 142 542 56 HOH HOH . L 5 HOH A 143 543 139 HOH HOH . M 5 HOH B 1 401 1 HOH HOH . M 5 HOH B 2 402 3 HOH HOH . M 5 HOH B 3 403 6 HOH HOH . M 5 HOH B 4 404 10 HOH HOH . M 5 HOH B 5 405 13 HOH HOH . M 5 HOH B 6 406 18 HOH HOH . M 5 HOH B 7 407 19 HOH HOH . M 5 HOH B 8 408 20 HOH HOH . M 5 HOH B 9 409 25 HOH HOH . M 5 HOH B 10 410 26 HOH HOH . M 5 HOH B 11 411 27 HOH HOH . M 5 HOH B 12 412 32 HOH HOH . M 5 HOH B 13 413 33 HOH HOH . M 5 HOH B 14 414 35 HOH HOH . M 5 HOH B 15 415 38 HOH HOH . M 5 HOH B 16 416 40 HOH HOH . M 5 HOH B 17 417 41 HOH HOH . M 5 HOH B 18 418 42 HOH HOH . M 5 HOH B 19 419 43 HOH HOH . M 5 HOH B 20 420 45 HOH HOH . M 5 HOH B 21 421 46 HOH HOH . M 5 HOH B 22 422 48 HOH HOH . M 5 HOH B 23 423 50 HOH HOH . M 5 HOH B 24 424 52 HOH HOH . M 5 HOH B 25 425 54 HOH HOH . M 5 HOH B 26 426 55 HOH HOH . M 5 HOH B 27 427 56 HOH HOH . M 5 HOH B 28 428 62 HOH HOH . M 5 HOH B 29 429 63 HOH HOH . M 5 HOH B 30 430 64 HOH HOH . M 5 HOH B 31 431 66 HOH HOH . M 5 HOH B 32 432 70 HOH HOH . M 5 HOH B 33 433 77 HOH HOH . M 5 HOH B 34 434 78 HOH HOH . M 5 HOH B 35 435 79 HOH HOH . M 5 HOH B 36 436 81 HOH HOH . M 5 HOH B 37 437 83 HOH HOH . M 5 HOH B 38 438 84 HOH HOH . M 5 HOH B 39 439 86 HOH HOH . M 5 HOH B 40 440 87 HOH HOH . M 5 HOH B 41 441 92 HOH HOH . M 5 HOH B 42 442 93 HOH HOH . M 5 HOH B 43 443 94 HOH HOH . M 5 HOH B 44 444 96 HOH HOH . M 5 HOH B 45 445 97 HOH HOH . M 5 HOH B 46 446 107 HOH HOH . M 5 HOH B 47 447 108 HOH HOH . M 5 HOH B 48 448 109 HOH HOH . M 5 HOH B 49 449 110 HOH HOH . M 5 HOH B 50 450 111 HOH HOH . M 5 HOH B 51 451 112 HOH HOH . M 5 HOH B 52 452 123 HOH HOH . M 5 HOH B 53 453 128 HOH HOH . M 5 HOH B 54 454 131 HOH HOH . M 5 HOH B 55 455 133 HOH HOH . M 5 HOH B 56 456 138 HOH HOH . M 5 HOH B 57 457 139 HOH HOH . M 5 HOH B 58 458 148 HOH HOH . M 5 HOH B 59 459 150 HOH HOH . M 5 HOH B 60 460 151 HOH HOH . M 5 HOH B 61 461 153 HOH HOH . M 5 HOH B 62 462 156 HOH HOH . M 5 HOH B 63 463 157 HOH HOH . M 5 HOH B 64 464 170 HOH HOH . M 5 HOH B 65 465 172 HOH HOH . M 5 HOH B 66 466 176 HOH HOH . M 5 HOH B 67 467 184 HOH HOH . M 5 HOH B 68 468 189 HOH HOH . M 5 HOH B 69 469 194 HOH HOH . M 5 HOH B 70 470 196 HOH HOH . M 5 HOH B 71 471 198 HOH HOH . M 5 HOH B 72 472 200 HOH HOH . M 5 HOH B 73 473 209 HOH HOH . M 5 HOH B 74 474 210 HOH HOH . M 5 HOH B 75 475 211 HOH HOH . M 5 HOH B 76 476 218 HOH HOH . M 5 HOH B 77 477 222 HOH HOH . M 5 HOH B 78 478 234 HOH HOH . M 5 HOH B 79 479 248 HOH HOH . M 5 HOH B 80 480 250 HOH HOH . M 5 HOH B 81 481 255 HOH HOH . M 5 HOH B 82 482 258 HOH HOH . M 5 HOH B 83 483 261 HOH HOH . M 5 HOH B 84 484 264 HOH HOH . M 5 HOH B 85 485 267 HOH HOH . M 5 HOH B 86 486 269 HOH HOH . M 5 HOH B 87 487 278 HOH HOH . M 5 HOH B 88 488 280 HOH HOH . M 5 HOH B 89 489 287 HOH HOH . M 5 HOH B 90 490 291 HOH HOH . M 5 HOH B 91 491 299 HOH HOH . M 5 HOH B 92 492 304 HOH HOH . M 5 HOH B 93 493 315 HOH HOH . M 5 HOH B 94 494 317 HOH HOH . M 5 HOH B 95 495 320 HOH HOH . M 5 HOH B 96 496 325 HOH HOH . M 5 HOH B 97 497 329 HOH HOH . M 5 HOH B 98 498 332 HOH HOH . M 5 HOH B 99 499 337 HOH HOH . M 5 HOH B 100 500 345 HOH HOH . M 5 HOH B 101 501 367 HOH HOH . M 5 HOH B 102 502 383 HOH HOH . M 5 HOH B 103 503 389 HOH HOH . M 5 HOH B 104 504 391 HOH HOH . M 5 HOH B 105 505 400 HOH HOH . M 5 HOH B 106 506 410 HOH HOH . M 5 HOH B 107 507 423 HOH HOH . M 5 HOH B 108 508 438 HOH HOH . M 5 HOH B 109 509 450 HOH HOH . M 5 HOH B 110 510 474 HOH HOH . M 5 HOH B 111 511 507 HOH HOH . M 5 HOH B 112 512 576 HOH HOH . M 5 HOH B 113 513 578 HOH HOH . M 5 HOH B 114 514 592 HOH HOH . M 5 HOH B 115 515 600 HOH HOH . M 5 HOH B 116 516 624 HOH HOH . M 5 HOH B 117 517 635 HOH HOH . M 5 HOH B 118 518 639 HOH HOH . M 5 HOH B 119 519 642 HOH HOH . M 5 HOH B 120 520 645 HOH HOH . M 5 HOH B 121 521 649 HOH HOH . M 5 HOH B 122 522 650 HOH HOH . M 5 HOH B 123 523 653 HOH HOH . M 5 HOH B 124 524 654 HOH HOH . M 5 HOH B 125 525 657 HOH HOH . M 5 HOH B 126 526 659 HOH HOH . M 5 HOH B 127 527 660 HOH HOH . M 5 HOH B 128 528 664 HOH HOH . M 5 HOH B 129 529 665 HOH HOH . M 5 HOH B 130 530 668 HOH HOH . M 5 HOH B 131 531 674 HOH HOH . M 5 HOH B 132 532 675 HOH HOH . M 5 HOH B 133 533 676 HOH HOH . M 5 HOH B 134 534 677 HOH HOH . M 5 HOH B 135 535 678 HOH HOH . M 5 HOH B 136 536 679 HOH HOH . M 5 HOH B 137 537 682 HOH HOH . M 5 HOH B 138 538 683 HOH HOH . M 5 HOH B 139 539 685 HOH HOH . M 5 HOH B 140 540 687 HOH HOH . M 5 HOH B 141 541 689 HOH HOH . M 5 HOH B 142 542 690 HOH HOH . M 5 HOH B 143 543 694 HOH HOH . M 5 HOH B 144 544 695 HOH HOH . M 5 HOH B 145 545 698 HOH HOH . M 5 HOH B 146 546 699 HOH HOH . M 5 HOH B 147 547 6 HOH HOH . M 5 HOH B 148 548 10 HOH HOH . M 5 HOH B 149 549 22 HOH HOH . M 5 HOH B 150 550 60 HOH HOH . M 5 HOH B 151 551 65 HOH HOH . M 5 HOH B 152 552 95 HOH HOH . M 5 HOH B 153 553 283 HOH HOH . M 5 HOH B 154 554 284 HOH HOH . M 5 HOH B 155 555 236 HOH HOH . M 5 HOH B 156 556 20 HOH HOH . M 5 HOH B 157 557 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 36.956 6.529 21.371 1 39.57 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 2 36.148 5.614 22.072 1 43.36 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 2 36.828 6.109 19.919 1 37.28 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 2 35.937 6.999 19.286 1 35.65 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 2 38.197 6.174 19.26 1 36.28 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 2 38.076 5.69 17.941 1 34.07 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #