data_4HKY # _model_server_result.job_id tgedPUExlUpG34RIHLauVw _model_server_result.datetime_utc '2024-11-24 03:36:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 4HKY # _exptl.entry_id 4HKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.96 _cell.angle_gamma 90 _cell.entry_id 4HKY _cell.length_a 145.627 _cell.length_b 39.324 _cell.length_c 75.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,S 1 1 B,J,K,L,M,N,O,P,Q,R,T 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc3 A NE2 HIS 162 A HIS 189 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc4 A SG CYS 181 A CYS 208 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc5 A OD2 ASP 196 A ASP 223 1_555 G CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 A NE2 HIS 223 A HIS 250 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc7 C O31 FPM . A FPM 301 1_555 F CD CD . A CD 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.778 ? metalc ? metalc8 D N4 SFR . A SFR 302 1_555 F CD CD . A CD 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.86 ? metalc ? metalc9 D O31 SFR . A SFR 302 1_555 F CD CD . A CD 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc10 G CD CD . A CD 305 1_555 S O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc11 G CD CD . A CD 305 1_555 B OE2 GLU 200 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc12 B NE2 HIS 93 B HIS 120 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc13 B ND1 HIS 95 B HIS 122 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc14 B OE1 GLU 125 B GLU 152 1_555 P CD CD . B CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc15 B NE2 HIS 162 B HIS 189 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc16 B SG CYS 181 B CYS 208 1_555 O CD CD . B CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc17 B OD2 ASP 196 B ASP 223 1_555 P CD CD . B CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc18 B NE2 HIS 223 B HIS 250 1_555 O CD CD . B CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc19 J O71 SFR . B SFR 301 1_555 N CD CD . B CD 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc20 J N4 SFR . B SFR 301 1_555 O CD CD . B CD 306 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc21 J O71 SFR . B SFR 301 1_555 O CD CD . B CD 306 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc22 K O31 FPM . B FPM 302 1_555 O CD CD . B CD 306 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.203 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 165 n n C1 C2 GOL sing 166 n n C1 H11 GOL sing 167 n n C1 H12 GOL sing 168 n n O1 HO1 GOL sing 169 n n C2 O2 GOL sing 170 n n C2 C3 GOL sing 171 n n C2 H2 GOL sing 172 n n O2 HO2 GOL sing 173 n n C3 O3 GOL sing 174 n n C3 H31 GOL sing 175 n n C3 H32 GOL sing 176 n n O3 HO3 GOL sing 177 n n # _atom_sites.entry_id 4HKY _atom_sites.fract_transf_matrix[1][1] 0.006867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FPM A 1 301 280 FPM FPM . D 3 SFR A 1 302 280 SFR SFR . E 4 CD A 1 303 281 CD CD . F 4 CD A 1 304 282 CD CD . G 4 CD A 1 305 283 CD CD . H 5 CL A 1 306 284 CL CL . I 5 CL A 1 307 285 CL CL . J 3 SFR B 1 301 280 SFR SFR . K 2 FPM B 1 302 280 FPM FPM . L 6 GOL B 1 303 286 GOL GOL . M 6 GOL B 1 304 287 GOL GOL . N 4 CD B 1 305 281 CD CD . O 4 CD B 1 306 282 CD CD . P 4 CD B 1 307 283 CD CD . Q 5 CL B 1 308 284 CL CL . R 5 CL B 1 309 285 CL CL . S 7 HOH A 1 401 3 HOH HOH . S 7 HOH A 2 402 7 HOH HOH . S 7 HOH A 3 403 8 HOH HOH . S 7 HOH A 4 404 11 HOH HOH . S 7 HOH A 5 405 19 HOH HOH . S 7 HOH A 6 406 20 HOH HOH . S 7 HOH A 7 407 23 HOH HOH . S 7 HOH A 8 408 24 HOH HOH . S 7 HOH A 9 409 25 HOH HOH . S 7 HOH A 10 410 30 HOH HOH . S 7 HOH A 11 411 32 HOH HOH . S 7 HOH A 12 412 35 HOH HOH . S 7 HOH A 13 413 36 HOH HOH . S 7 HOH A 14 414 37 HOH HOH . S 7 HOH A 15 415 41 HOH HOH . S 7 HOH A 16 416 42 HOH HOH . S 7 HOH A 17 417 53 HOH HOH . S 7 HOH A 18 418 55 HOH HOH . S 7 HOH A 19 419 57 HOH HOH . S 7 HOH A 20 420 58 HOH HOH . S 7 HOH A 21 421 59 HOH HOH . S 7 HOH A 22 422 60 HOH HOH . S 7 HOH A 23 423 62 HOH HOH . S 7 HOH A 24 424 63 HOH HOH . S 7 HOH A 25 425 64 HOH HOH . S 7 HOH A 26 426 70 HOH HOH . S 7 HOH A 27 427 72 HOH HOH . S 7 HOH A 28 428 73 HOH HOH . S 7 HOH A 29 429 78 HOH HOH . S 7 HOH A 30 430 80 HOH HOH . S 7 HOH A 31 431 83 HOH HOH . S 7 HOH A 32 432 85 HOH HOH . S 7 HOH A 33 433 87 HOH HOH . S 7 HOH A 34 434 92 HOH HOH . S 7 HOH A 35 435 94 HOH HOH . S 7 HOH A 36 436 95 HOH HOH . S 7 HOH A 37 437 100 HOH HOH . S 7 HOH A 38 438 101 HOH HOH . S 7 HOH A 39 439 102 HOH HOH . S 7 HOH A 40 440 104 HOH HOH . S 7 HOH A 41 441 105 HOH HOH . S 7 HOH A 42 442 106 HOH HOH . S 7 HOH A 43 443 107 HOH HOH . S 7 HOH A 44 444 113 HOH HOH . S 7 HOH A 45 445 119 HOH HOH . S 7 HOH A 46 446 124 HOH HOH . S 7 HOH A 47 447 127 HOH HOH . S 7 HOH A 48 448 128 HOH HOH . S 7 HOH A 49 449 132 HOH HOH . T 7 HOH B 1 401 1 HOH HOH . T 7 HOH B 2 402 2 HOH HOH . T 7 HOH B 3 403 4 HOH HOH . T 7 HOH B 4 404 5 HOH HOH . T 7 HOH B 5 405 6 HOH HOH . T 7 HOH B 6 406 9 HOH HOH . T 7 HOH B 7 407 10 HOH HOH . T 7 HOH B 8 408 12 HOH HOH . T 7 HOH B 9 409 13 HOH HOH . T 7 HOH B 10 410 14 HOH HOH . T 7 HOH B 11 411 15 HOH HOH . T 7 HOH B 12 412 16 HOH HOH . T 7 HOH B 13 413 17 HOH HOH . T 7 HOH B 14 414 18 HOH HOH . T 7 HOH B 15 415 21 HOH HOH . T 7 HOH B 16 416 22 HOH HOH . T 7 HOH B 17 417 26 HOH HOH . T 7 HOH B 18 418 27 HOH HOH . T 7 HOH B 19 419 28 HOH HOH . T 7 HOH B 20 420 29 HOH HOH . T 7 HOH B 21 421 31 HOH HOH . T 7 HOH B 22 422 33 HOH HOH . T 7 HOH B 23 423 34 HOH HOH . T 7 HOH B 24 424 38 HOH HOH . T 7 HOH B 25 425 39 HOH HOH . T 7 HOH B 26 426 40 HOH HOH . T 7 HOH B 27 427 43 HOH HOH . T 7 HOH B 28 428 44 HOH HOH . T 7 HOH B 29 429 45 HOH HOH . T 7 HOH B 30 430 46 HOH HOH . T 7 HOH B 31 431 47 HOH HOH . T 7 HOH B 32 432 48 HOH HOH . T 7 HOH B 33 433 49 HOH HOH . T 7 HOH B 34 434 50 HOH HOH . T 7 HOH B 35 435 51 HOH HOH . T 7 HOH B 36 436 52 HOH HOH . T 7 HOH B 37 437 54 HOH HOH . T 7 HOH B 38 438 56 HOH HOH . T 7 HOH B 39 439 61 HOH HOH . T 7 HOH B 40 440 65 HOH HOH . T 7 HOH B 41 441 66 HOH HOH . T 7 HOH B 42 442 67 HOH HOH . T 7 HOH B 43 443 68 HOH HOH . T 7 HOH B 44 444 69 HOH HOH . T 7 HOH B 45 445 71 HOH HOH . T 7 HOH B 46 446 74 HOH HOH . T 7 HOH B 47 447 75 HOH HOH . T 7 HOH B 48 448 76 HOH HOH . T 7 HOH B 49 449 77 HOH HOH . T 7 HOH B 50 450 79 HOH HOH . T 7 HOH B 51 451 81 HOH HOH . T 7 HOH B 52 452 82 HOH HOH . T 7 HOH B 53 453 84 HOH HOH . T 7 HOH B 54 454 86 HOH HOH . T 7 HOH B 55 455 88 HOH HOH . T 7 HOH B 56 456 89 HOH HOH . T 7 HOH B 57 457 90 HOH HOH . T 7 HOH B 58 458 91 HOH HOH . T 7 HOH B 59 459 93 HOH HOH . T 7 HOH B 60 460 96 HOH HOH . T 7 HOH B 61 461 97 HOH HOH . T 7 HOH B 62 462 98 HOH HOH . T 7 HOH B 63 463 99 HOH HOH . T 7 HOH B 64 464 103 HOH HOH . T 7 HOH B 65 465 108 HOH HOH . T 7 HOH B 66 466 109 HOH HOH . T 7 HOH B 67 467 110 HOH HOH . T 7 HOH B 68 468 111 HOH HOH . T 7 HOH B 69 469 112 HOH HOH . T 7 HOH B 70 470 114 HOH HOH . T 7 HOH B 71 471 115 HOH HOH . T 7 HOH B 72 472 116 HOH HOH . T 7 HOH B 73 473 117 HOH HOH . T 7 HOH B 74 474 118 HOH HOH . T 7 HOH B 75 475 120 HOH HOH . T 7 HOH B 76 476 121 HOH HOH . T 7 HOH B 77 477 122 HOH HOH . T 7 HOH B 78 478 123 HOH HOH . T 7 HOH B 79 479 125 HOH HOH . T 7 HOH B 80 480 126 HOH HOH . T 7 HOH B 81 481 129 HOH HOH . T 7 HOH B 82 482 130 HOH HOH . T 7 HOH B 83 483 131 HOH HOH . T 7 HOH B 84 484 133 HOH HOH . T 7 HOH B 85 485 134 HOH HOH . T 7 HOH B 86 486 135 HOH HOH . T 7 HOH B 87 487 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 6 -2.102 22.837 22.177 1 65.72 ? C1 GOL 303 B 1 HETATM 2 O O1 GOL . . . L 6 -3.147 23.548 21.549 1 65.5 ? O1 GOL 303 B 1 HETATM 3 C C2 GOL . . . L 6 -1.087 23.836 22.656 1 66.57 ? C2 GOL 303 B 1 HETATM 4 O O2 GOL . . . L 6 -1.524 24.352 23.933 1 65.92 ? O2 GOL 303 B 1 HETATM 5 C C3 GOL . . . L 6 0.222 23.075 22.718 1 65.81 ? C3 GOL 303 B 1 HETATM 6 O O3 GOL . . . L 6 0.026 21.829 23.4 1 65.39 ? O3 GOL 303 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #