data_4HKY
#
_model_server_result.job_id            1aD9LciGWbmT2CEGwacVBg 
_model_server_result.datetime_utc      '2024-11-02 12:30:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":303}' 
#
_entry.id    4HKY 
#
_exptl.entry_id    4HKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.96 
_cell.angle_gamma         90 
_cell.entry_id            4HKY 
_cell.length_a            145.627 
_cell.length_b            39.324 
_cell.length_c            75.37 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,S 1 1 
B,J,K,L,M,N,O,P,Q,R,T 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 93 A HIS 120 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc2 A ND1 HIS 95 A HIS 122 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? 
metalc ? metalc3 A NE2 HIS 162 A HIS 189 1_555 E CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc4 A SG CYS 181 A CYS 208 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc5 A OD2 ASP 196 A ASP 223 1_555 G CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc6 A NE2 HIS 223 A HIS 250 1_555 F CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc7 C O31 FPM . A FPM 301 1_555 F CD CD . A CD 304 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.778 ? 
metalc ? metalc8 D N4 SFR . A SFR 302 1_555 F CD CD . A CD 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc9 D O31 SFR . A SFR 302 1_555 F CD CD . A CD 304 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc10 G CD CD . A CD 305 1_555 S O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc11 G CD CD . A CD 305 1_555 B OE2 GLU 200 B GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc12 B NE2 HIS 93 B HIS 120 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc13 B ND1 HIS 95 B HIS 122 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc14 B OE1 GLU 125 B GLU 152 1_555 P CD CD . B CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc15 B NE2 HIS 162 B HIS 189 1_555 N CD CD . B CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc16 B SG CYS 181 B CYS 208 1_555 O CD CD . B CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? 
metalc ? metalc17 B OD2 ASP 196 B ASP 223 1_555 P CD CD . B CD 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc18 B NE2 HIS 223 B HIS 250 1_555 O CD CD . B CD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc19 J O71 SFR . B SFR 301 1_555 N CD CD . B CD 305 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc20 J N4 SFR . B SFR 301 1_555 O CD CD . B CD 306 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc21 J O71 SFR . B SFR 301 1_555 O CD CD . B CD 306 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc22 K O31 FPM . B FPM 302 1_555 O CD CD . B CD 306 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 165 n n 
C1 C2 GOL sing 166 n n 
C1 H11 GOL sing 167 n n 
C1 H12 GOL sing 168 n n 
O1 HO1 GOL sing 169 n n 
C2 O2 GOL sing 170 n n 
C2 C3 GOL sing 171 n n 
C2 H2 GOL sing 172 n n 
O2 HO2 GOL sing 173 n n 
C3 O3 GOL sing 174 n n 
C3 H31 GOL sing 175 n n 
C3 H32 GOL sing 176 n n 
O3 HO3 GOL sing 177 n n 
#
_atom_sites.entry_id                     4HKY 
_atom_sites.fract_transf_matrix[1][1]    0.006867 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001206 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02543 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013471 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FPM A 1 301 280 FPM FPM . 
D 3 SFR A 1 302 280 SFR SFR . 
E 4 CD A 1 303 281 CD CD . 
F 4 CD A 1 304 282 CD CD . 
G 4 CD A 1 305 283 CD CD . 
H 5 CL A 1 306 284 CL CL . 
I 5 CL A 1 307 285 CL CL . 
J 3 SFR B 1 301 280 SFR SFR . 
K 2 FPM B 1 302 280 FPM FPM . 
L 6 GOL B 1 303 286 GOL GOL . 
M 6 GOL B 1 304 287 GOL GOL . 
N 4 CD B 1 305 281 CD CD . 
O 4 CD B 1 306 282 CD CD . 
P 4 CD B 1 307 283 CD CD . 
Q 5 CL B 1 308 284 CL CL . 
R 5 CL B 1 309 285 CL CL . 
S 7 HOH A 1 401 3 HOH HOH . 
S 7 HOH A 2 402 7 HOH HOH . 
S 7 HOH A 3 403 8 HOH HOH . 
S 7 HOH A 4 404 11 HOH HOH . 
S 7 HOH A 5 405 19 HOH HOH . 
S 7 HOH A 6 406 20 HOH HOH . 
S 7 HOH A 7 407 23 HOH HOH . 
S 7 HOH A 8 408 24 HOH HOH . 
S 7 HOH A 9 409 25 HOH HOH . 
S 7 HOH A 10 410 30 HOH HOH . 
S 7 HOH A 11 411 32 HOH HOH . 
S 7 HOH A 12 412 35 HOH HOH . 
S 7 HOH A 13 413 36 HOH HOH . 
S 7 HOH A 14 414 37 HOH HOH . 
S 7 HOH A 15 415 41 HOH HOH . 
S 7 HOH A 16 416 42 HOH HOH . 
S 7 HOH A 17 417 53 HOH HOH . 
S 7 HOH A 18 418 55 HOH HOH . 
S 7 HOH A 19 419 57 HOH HOH . 
S 7 HOH A 20 420 58 HOH HOH . 
S 7 HOH A 21 421 59 HOH HOH . 
S 7 HOH A 22 422 60 HOH HOH . 
S 7 HOH A 23 423 62 HOH HOH . 
S 7 HOH A 24 424 63 HOH HOH . 
S 7 HOH A 25 425 64 HOH HOH . 
S 7 HOH A 26 426 70 HOH HOH . 
S 7 HOH A 27 427 72 HOH HOH . 
S 7 HOH A 28 428 73 HOH HOH . 
S 7 HOH A 29 429 78 HOH HOH . 
S 7 HOH A 30 430 80 HOH HOH . 
S 7 HOH A 31 431 83 HOH HOH . 
S 7 HOH A 32 432 85 HOH HOH . 
S 7 HOH A 33 433 87 HOH HOH . 
S 7 HOH A 34 434 92 HOH HOH . 
S 7 HOH A 35 435 94 HOH HOH . 
S 7 HOH A 36 436 95 HOH HOH . 
S 7 HOH A 37 437 100 HOH HOH . 
S 7 HOH A 38 438 101 HOH HOH . 
S 7 HOH A 39 439 102 HOH HOH . 
S 7 HOH A 40 440 104 HOH HOH . 
S 7 HOH A 41 441 105 HOH HOH . 
S 7 HOH A 42 442 106 HOH HOH . 
S 7 HOH A 43 443 107 HOH HOH . 
S 7 HOH A 44 444 113 HOH HOH . 
S 7 HOH A 45 445 119 HOH HOH . 
S 7 HOH A 46 446 124 HOH HOH . 
S 7 HOH A 47 447 127 HOH HOH . 
S 7 HOH A 48 448 128 HOH HOH . 
S 7 HOH A 49 449 132 HOH HOH . 
T 7 HOH B 1 401 1 HOH HOH . 
T 7 HOH B 2 402 2 HOH HOH . 
T 7 HOH B 3 403 4 HOH HOH . 
T 7 HOH B 4 404 5 HOH HOH . 
T 7 HOH B 5 405 6 HOH HOH . 
T 7 HOH B 6 406 9 HOH HOH . 
T 7 HOH B 7 407 10 HOH HOH . 
T 7 HOH B 8 408 12 HOH HOH . 
T 7 HOH B 9 409 13 HOH HOH . 
T 7 HOH B 10 410 14 HOH HOH . 
T 7 HOH B 11 411 15 HOH HOH . 
T 7 HOH B 12 412 16 HOH HOH . 
T 7 HOH B 13 413 17 HOH HOH . 
T 7 HOH B 14 414 18 HOH HOH . 
T 7 HOH B 15 415 21 HOH HOH . 
T 7 HOH B 16 416 22 HOH HOH . 
T 7 HOH B 17 417 26 HOH HOH . 
T 7 HOH B 18 418 27 HOH HOH . 
T 7 HOH B 19 419 28 HOH HOH . 
T 7 HOH B 20 420 29 HOH HOH . 
T 7 HOH B 21 421 31 HOH HOH . 
T 7 HOH B 22 422 33 HOH HOH . 
T 7 HOH B 23 423 34 HOH HOH . 
T 7 HOH B 24 424 38 HOH HOH . 
T 7 HOH B 25 425 39 HOH HOH . 
T 7 HOH B 26 426 40 HOH HOH . 
T 7 HOH B 27 427 43 HOH HOH . 
T 7 HOH B 28 428 44 HOH HOH . 
T 7 HOH B 29 429 45 HOH HOH . 
T 7 HOH B 30 430 46 HOH HOH . 
T 7 HOH B 31 431 47 HOH HOH . 
T 7 HOH B 32 432 48 HOH HOH . 
T 7 HOH B 33 433 49 HOH HOH . 
T 7 HOH B 34 434 50 HOH HOH . 
T 7 HOH B 35 435 51 HOH HOH . 
T 7 HOH B 36 436 52 HOH HOH . 
T 7 HOH B 37 437 54 HOH HOH . 
T 7 HOH B 38 438 56 HOH HOH . 
T 7 HOH B 39 439 61 HOH HOH . 
T 7 HOH B 40 440 65 HOH HOH . 
T 7 HOH B 41 441 66 HOH HOH . 
T 7 HOH B 42 442 67 HOH HOH . 
T 7 HOH B 43 443 68 HOH HOH . 
T 7 HOH B 44 444 69 HOH HOH . 
T 7 HOH B 45 445 71 HOH HOH . 
T 7 HOH B 46 446 74 HOH HOH . 
T 7 HOH B 47 447 75 HOH HOH . 
T 7 HOH B 48 448 76 HOH HOH . 
T 7 HOH B 49 449 77 HOH HOH . 
T 7 HOH B 50 450 79 HOH HOH . 
T 7 HOH B 51 451 81 HOH HOH . 
T 7 HOH B 52 452 82 HOH HOH . 
T 7 HOH B 53 453 84 HOH HOH . 
T 7 HOH B 54 454 86 HOH HOH . 
T 7 HOH B 55 455 88 HOH HOH . 
T 7 HOH B 56 456 89 HOH HOH . 
T 7 HOH B 57 457 90 HOH HOH . 
T 7 HOH B 58 458 91 HOH HOH . 
T 7 HOH B 59 459 93 HOH HOH . 
T 7 HOH B 60 460 96 HOH HOH . 
T 7 HOH B 61 461 97 HOH HOH . 
T 7 HOH B 62 462 98 HOH HOH . 
T 7 HOH B 63 463 99 HOH HOH . 
T 7 HOH B 64 464 103 HOH HOH . 
T 7 HOH B 65 465 108 HOH HOH . 
T 7 HOH B 66 466 109 HOH HOH . 
T 7 HOH B 67 467 110 HOH HOH . 
T 7 HOH B 68 468 111 HOH HOH . 
T 7 HOH B 69 469 112 HOH HOH . 
T 7 HOH B 70 470 114 HOH HOH . 
T 7 HOH B 71 471 115 HOH HOH . 
T 7 HOH B 72 472 116 HOH HOH . 
T 7 HOH B 73 473 117 HOH HOH . 
T 7 HOH B 74 474 118 HOH HOH . 
T 7 HOH B 75 475 120 HOH HOH . 
T 7 HOH B 76 476 121 HOH HOH . 
T 7 HOH B 77 477 122 HOH HOH . 
T 7 HOH B 78 478 123 HOH HOH . 
T 7 HOH B 79 479 125 HOH HOH . 
T 7 HOH B 80 480 126 HOH HOH . 
T 7 HOH B 81 481 129 HOH HOH . 
T 7 HOH B 82 482 130 HOH HOH . 
T 7 HOH B 83 483 131 HOH HOH . 
T 7 HOH B 84 484 133 HOH HOH . 
T 7 HOH B 85 485 134 HOH HOH . 
T 7 HOH B 86 486 135 HOH HOH . 
T 7 HOH B 87 487 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 6 -2.102 22.837 22.177 1 65.72 ? C1 GOL 303 B 1 
HETATM 2 O O1 GOL . . . L 6 -3.147 23.548 21.549 1 65.5 ? O1 GOL 303 B 1 
HETATM 3 C C2 GOL . . . L 6 -1.087 23.836 22.656 1 66.57 ? C2 GOL 303 B 1 
HETATM 4 O O2 GOL . . . L 6 -1.524 24.352 23.933 1 65.92 ? O2 GOL 303 B 1 
HETATM 5 C C3 GOL . . . L 6 0.222 23.075 22.718 1 65.81 ? C3 GOL 303 B 1 
HETATM 6 O O3 GOL . . . L 6 0.026 21.829 23.4 1 65.39 ? O3 GOL 303 B 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#