data_4HLZ # _model_server_result.job_id -bm-KLcuEMcNdxyxJtX8TA _model_server_result.datetime_utc '2024-12-21 14:55:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":202}' # _entry.id 4HLZ # _exptl.entry_id 4HLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HLZ _cell.length_a 136.58 _cell.length_b 150.78 _cell.length_c 217.78 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 R N N ? 8 S N N ? 8 U N N ? 8 W N N ? 8 Z N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n M NAG 1 M 1 NAG M 2 NAG 5 n M NAG 2 M 2 NAG M 3 NAG 5 n M BMA 3 M 3 BMA M 4 BMA 6 n N NAG 1 N 1 NAG N 2 NAG 6 n N NAG 2 N 2 NAG N 3 NAG 6 n N BMA 3 N 3 BMA N 4 BMA 6 n N MAN 4 N 4 MAN N 10 MAN 7 n O NAG 1 O 1 NAG A 2 NAG 7 n O NAG 2 O 2 NAG A 3 NAG 5 n P NAG 1 P 1 NAG O 2 NAG 5 n P NAG 2 P 2 NAG O 3 NAG 5 n P BMA 3 P 3 BMA O 4 BMA 7 n Q NAG 1 Q 1 NAG T 2 NAG 7 n Q NAG 2 Q 2 NAG T 3 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 14 1_555 B SG CYS 137 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 A SG CYS 44 A CYS 52 1_555 A SG CYS 275 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 57 A CYS 64 1_555 A SG CYS 69 A CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf4 A SG CYS 279 A CYS 281 1_555 A SG CYS 303 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf5 B SG CYS 144 B CYS 144 1_555 B SG CYS 148 B CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 C SG CYS 6 C CYS 14 1_555 D SG CYS 137 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf7 C SG CYS 44 C CYS 52 1_555 C SG CYS 275 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 C SG CYS 57 C CYS 64 1_555 C SG CYS 69 C CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf9 C SG CYS 279 C CYS 281 1_555 C SG CYS 303 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 D SG CYS 144 D CYS 144 1_555 D SG CYS 148 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf11 E SG CYS 6 E CYS 14 1_555 F SG CYS 137 F CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf12 E SG CYS 44 E CYS 52 1_555 E SG CYS 275 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? disulf ? disulf13 E SG CYS 57 E CYS 64 1_555 E SG CYS 69 E CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 E SG CYS 279 E CYS 281 1_555 E SG CYS 303 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf15 F SG CYS 144 F CYS 144 1_555 F SG CYS 148 F CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf16 G SG CYS 22 G CYS 22 1_555 G SG CYS 98 G CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf17 G SG CYS 149 G CYS 140 1_555 G SG CYS 204 G CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf18 H SG CYS 23 H CYS 25 1_555 H SG CYS 88 H CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 H SG CYS 134 H CYS 136 1_555 H SG CYS 194 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf20 I SG CYS 22 I CYS 22 1_555 I SG CYS 98 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 I SG CYS 149 I CYS 140 1_555 I SG CYS 204 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf22 J SG CYS 23 J CYS 25 1_555 J SG CYS 88 J CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf23 J SG CYS 134 J CYS 136 1_555 J SG CYS 194 J CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf24 K SG CYS 22 K CYS 22 1_555 K SG CYS 98 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf25 K SG CYS 149 K CYS 140 1_555 K SG CYS 204 K CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf26 L SG CYS 23 L CYS 25 1_555 L SG CYS 88 L CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf27 L SG CYS 134 L CYS 136 1_555 L SG CYS 194 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 13 A ASN 21 1_555 S C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 166 A ASN 169 1_555 R C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 A ND2 ASN 287 A ASN 289 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 154 B ASN 154 1_555 U C1 NAG . B NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 C ND2 ASN 166 C ASN 169 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale6 C ND2 ASN 287 C ASN 289 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale7 E ND2 ASN 13 E ASN 21 1_555 Q C1 NAG . Q NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 E ND2 ASN 166 E ASN 169 1_555 W C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale9 E ND2 ASN 287 E ASN 289 1_555 P C1 NAG . P NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 F ND2 ASN 154 F ASN 154 1_555 Z C1 NAG . F NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale11 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 M O4 NAG . M NAG 2 1_555 M C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 N O4 NAG . N NAG 2 1_555 N C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale15 N O3 BMA . N BMA 3 1_555 N C1 MAN . N MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale17 P O4 NAG . P NAG 1 1_555 P C1 NAG . P NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale18 P O4 NAG . P NAG 2 1_555 P C1 BMA . P BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale19 Q O4 NAG . Q NAG 1 1_555 Q C1 NAG . Q NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 292 n n C1 O1 NAG sing 293 n n C1 O5 NAG sing 294 n n C1 H1 NAG sing 295 n n C2 C3 NAG sing 296 n n C2 N2 NAG sing 297 n n C2 H2 NAG sing 298 n n C3 C4 NAG sing 299 n n C3 O3 NAG sing 300 n n C3 H3 NAG sing 301 n n C4 C5 NAG sing 302 n n C4 O4 NAG sing 303 n n C4 H4 NAG sing 304 n n C5 C6 NAG sing 305 n n C5 O5 NAG sing 306 n n C5 H5 NAG sing 307 n n C6 O6 NAG sing 308 n n C6 H61 NAG sing 309 n n C6 H62 NAG sing 310 n n C7 C8 NAG sing 311 n n C7 N2 NAG sing 312 n n C7 O7 NAG doub 313 n n C8 H81 NAG sing 314 n n C8 H82 NAG sing 315 n n C8 H83 NAG sing 316 n n N2 HN2 NAG sing 317 n n O1 HO1 NAG sing 318 n n O3 HO3 NAG sing 319 n n O4 HO4 NAG sing 320 n n O6 HO6 NAG sing 321 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4HLZ _atom_sites.fract_transf_matrix[1][1] 0.007322 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006632 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004592 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code R 8 NAG A 1 401 2 NAG NAG . S 8 NAG A 1 405 2 NAG NAG . T 9 SO4 B 1 201 1 SO4 SO4 . U 8 NAG B 1 202 2 NAG NAG . V 9 SO4 D 1 201 2 SO4 SO4 . W 8 NAG E 1 401 2 NAG NAG . X 9 SO4 E 1 402 1 SO4 SO4 . Y 9 SO4 F 1 201 3 SO4 SO4 . Z 8 NAG F 1 202 2 NAG NAG . AA 9 SO4 H 1 301 1 SO4 SO4 . BA 9 SO4 J 1 301 1 SO4 SO4 . CA 10 EDO J 1 302 1 EDO EDO . DA 9 SO4 L 1 301 1 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Z 8 -10.386 66.753 6.747 1 101.47 ? C1 NAG 202 F 1 HETATM 2 C C2 NAG . . . Z 8 -10.666 68.241 6.542 1 105.93 ? C2 NAG 202 F 1 HETATM 3 C C3 NAG . . . Z 8 -10.644 69.048 7.836 1 108.21 ? C3 NAG 202 F 1 HETATM 4 C C4 NAG . . . Z 8 -11.394 68.326 8.962 1 118.45 ? C4 NAG 202 F 1 HETATM 5 C C5 NAG . . . Z 8 -10.947 66.863 9.037 1 117.15 ? C5 NAG 202 F 1 HETATM 6 C C6 NAG . . . Z 8 -11.661 66.077 10.141 1 118.02 ? C6 NAG 202 F 1 HETATM 7 C C7 NAG . . . Z 8 -9.863 68.806 4.359 1 117.53 ? C7 NAG 202 F 1 HETATM 8 C C8 NAG . . . Z 8 -8.688 69.224 3.509 1 105.72 ? C8 NAG 202 F 1 HETATM 9 N N2 NAG . . . Z 8 -9.653 68.781 5.665 1 116.05 ? N2 NAG 202 F 1 HETATM 10 O O3 NAG . . . Z 8 -11.15 70.351 7.567 1 100.35 ? O3 NAG 202 F 1 HETATM 11 O O4 NAG . . . Z 8 -11.163 68.966 10.205 1 125.4 ? O4 NAG 202 F 1 HETATM 12 O O5 NAG . . . Z 8 -11.195 66.245 7.789 1 114.86 ? O5 NAG 202 F 1 HETATM 13 O O6 NAG . . . Z 8 -10.738 65.323 10.904 1 109.97 ? O6 NAG 202 F 1 HETATM 14 O O7 NAG . . . Z 8 -10.965 68.49 3.888 1 121.63 ? O7 NAG 202 F 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 14 #