data_4HMB # _model_server_result.job_id JtA1Bkr8hv37Uw3MuMgSdQ _model_server_result.datetime_utc '2024-12-26 11:41:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hmb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4HMB # _exptl.entry_id 4HMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{3-[(DIMETHYLAMINO)METHYL]-1H-INDOL-7-YL}PROPAN-1-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HMB _cell.length_a 53.077 _cell.length_b 53.077 _cell.length_c 48.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 121 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C14 H20 N2 O' _chem_comp.formula_weight 232.321 _chem_comp.id PZZ _chem_comp.mon_nstd_flag . _chem_comp.name 3-{3-[(DIMETHYLAMINO)METHYL]-1H-INDOL-7-YL}PROPAN-1-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 PZZ sing 277 n y C2 C3 PZZ doub 278 n y C2 H2 PZZ sing 279 n n C3 C8 PZZ sing 280 n y C3 C10 PZZ sing 281 n n N1 C9 PZZ sing 282 n y N1 HN1 PZZ sing 283 n n C4 C5 PZZ doub 284 n y C4 C8 PZZ sing 285 n y C4 H4 PZZ sing 286 n n C5 C6 PZZ sing 287 n y C5 H5 PZZ sing 288 n n C6 C7 PZZ doub 289 n y C6 H6 PZZ sing 290 n n C7 C14 PZZ sing 291 n n C7 C9 PZZ sing 292 n y C8 C9 PZZ doub 293 n y C10 N11 PZZ sing 294 n n C10 H101 PZZ sing 295 n n C10 H102 PZZ sing 296 n n N11 C12 PZZ sing 297 n n N11 C13 PZZ sing 298 n n C12 H121 PZZ sing 299 n n C12 H122 PZZ sing 300 n n C12 H123 PZZ sing 301 n n C13 H131 PZZ sing 302 n n C13 H132 PZZ sing 303 n n C13 H133 PZZ sing 304 n n C14 C15 PZZ sing 305 n n C14 H141 PZZ sing 306 n n C14 H142 PZZ sing 307 n n C15 C16 PZZ sing 308 n n C15 H151 PZZ sing 309 n n C15 H152 PZZ sing 310 n n C16 O17 PZZ sing 311 n n C16 H161 PZZ sing 312 n n C16 H162 PZZ sing 313 n n O17 HO17 PZZ sing 314 n n # _atom_sites.entry_id 4HMB _atom_sites.fract_transf_matrix[1][1] 0.018841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PZZ A 1 201 134 PZZ PZZ . C 3 HOH A 1 301 135 HOH HOH . C 3 HOH A 2 302 136 HOH HOH . C 3 HOH A 3 303 137 HOH HOH . C 3 HOH A 4 304 138 HOH HOH . C 3 HOH A 5 305 139 HOH HOH . C 3 HOH A 6 306 140 HOH HOH . C 3 HOH A 7 307 141 HOH HOH . C 3 HOH A 8 308 142 HOH HOH . C 3 HOH A 9 309 143 HOH HOH . C 3 HOH A 10 310 144 HOH HOH . C 3 HOH A 11 311 145 HOH HOH . C 3 HOH A 12 312 146 HOH HOH . C 3 HOH A 13 313 147 HOH HOH . C 3 HOH A 14 314 148 HOH HOH . C 3 HOH A 15 315 150 HOH HOH . C 3 HOH A 16 316 151 HOH HOH . C 3 HOH A 17 317 152 HOH HOH . C 3 HOH A 18 318 153 HOH HOH . C 3 HOH A 19 319 154 HOH HOH . C 3 HOH A 20 320 155 HOH HOH . C 3 HOH A 21 321 156 HOH HOH . C 3 HOH A 22 322 157 HOH HOH . C 3 HOH A 23 323 158 HOH HOH . C 3 HOH A 24 324 159 HOH HOH . C 3 HOH A 25 325 161 HOH HOH . C 3 HOH A 26 326 162 HOH HOH . C 3 HOH A 27 327 163 HOH HOH . C 3 HOH A 28 328 164 HOH HOH . C 3 HOH A 29 329 165 HOH HOH . C 3 HOH A 30 330 166 HOH HOH . C 3 HOH A 31 331 168 HOH HOH . C 3 HOH A 32 332 170 HOH HOH . C 3 HOH A 33 333 171 HOH HOH . C 3 HOH A 34 334 172 HOH HOH . C 3 HOH A 35 335 173 HOH HOH . C 3 HOH A 36 336 174 HOH HOH . C 3 HOH A 37 337 176 HOH HOH . C 3 HOH A 38 338 178 HOH HOH . C 3 HOH A 39 339 180 HOH HOH . C 3 HOH A 40 340 182 HOH HOH . C 3 HOH A 41 341 183 HOH HOH . C 3 HOH A 42 342 184 HOH HOH . C 3 HOH A 43 343 185 HOH HOH . C 3 HOH A 44 344 186 HOH HOH . C 3 HOH A 45 345 187 HOH HOH . C 3 HOH A 46 346 188 HOH HOH . C 3 HOH A 47 347 189 HOH HOH . C 3 HOH A 48 348 190 HOH HOH . C 3 HOH A 49 349 192 HOH HOH . C 3 HOH A 50 350 193 HOH HOH . C 3 HOH A 51 351 194 HOH HOH . C 3 HOH A 52 352 195 HOH HOH . C 3 HOH A 53 353 196 HOH HOH . C 3 HOH A 54 354 197 HOH HOH . C 3 HOH A 55 355 199 HOH HOH . C 3 HOH A 56 356 202 HOH HOH . C 3 HOH A 57 357 203 HOH HOH . C 3 HOH A 58 358 204 HOH HOH . C 3 HOH A 59 359 206 HOH HOH . C 3 HOH A 60 360 210 HOH HOH . C 3 HOH A 61 361 211 HOH HOH . C 3 HOH A 62 362 212 HOH HOH . C 3 HOH A 63 363 214 HOH HOH . C 3 HOH A 64 364 215 HOH HOH . C 3 HOH A 65 365 217 HOH HOH . C 3 HOH A 66 366 218 HOH HOH . C 3 HOH A 67 367 219 HOH HOH . C 3 HOH A 68 368 220 HOH HOH . C 3 HOH A 69 369 221 HOH HOH . C 3 HOH A 70 370 222 HOH HOH . C 3 HOH A 71 371 223 HOH HOH . C 3 HOH A 72 372 224 HOH HOH . C 3 HOH A 73 373 225 HOH HOH . C 3 HOH A 74 374 227 HOH HOH . C 3 HOH A 75 375 228 HOH HOH . C 3 HOH A 76 376 229 HOH HOH . C 3 HOH A 77 377 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PZZ . . . B 2 22.315 6.024 9.614 0.7 68.67 ? C2 PZZ 201 A 1 HETATM 2 C C3 PZZ . . . B 2 21.215 5.364 9.053 0.7 66.48 ? C3 PZZ 201 A 1 HETATM 3 N N1 PZZ . . . B 2 23.149 6.504 8.636 0.7 74.44 ? N1 PZZ 201 A 1 HETATM 4 C C4 PZZ . . . B 2 20.68 5.033 6.484 0.7 64.43 ? C4 PZZ 201 A 1 HETATM 5 C C5 PZZ . . . B 2 21.16 5.291 5.188 0.7 62.61 ? C5 PZZ 201 A 1 HETATM 6 C C6 PZZ . . . B 2 22.362 5.982 4.941 0.7 62.55 ? C6 PZZ 201 A 1 HETATM 7 C C7 PZZ . . . B 2 23.188 6.469 5.971 0.7 64.23 ? C7 PZZ 201 A 1 HETATM 8 C C8 PZZ . . . B 2 21.428 5.468 7.58 0.7 69.21 ? C8 PZZ 201 A 1 HETATM 9 C C9 PZZ . . . B 2 22.708 6.217 7.387 0.7 68.87 ? C9 PZZ 201 A 1 HETATM 10 C C10 PZZ . . . B 2 20.045 4.708 9.771 0.7 66.5 ? C10 PZZ 201 A 1 HETATM 11 N N11 PZZ . . . B 2 19.742 5.246 11.132 0.7 68.56 ? N11 PZZ 201 A 1 HETATM 12 C C12 PZZ . . . B 2 19.802 6.731 11.192 0.7 70.83 ? C12 PZZ 201 A 1 HETATM 13 C C13 PZZ . . . B 2 18.376 4.837 11.544 0.7 66.96 ? C13 PZZ 201 A 1 HETATM 14 C C14 PZZ . . . B 2 24.491 7.234 5.669 0.7 57.79 ? C14 PZZ 201 A 1 HETATM 15 C C15 PZZ . . . B 2 25.341 6.754 4.468 0.7 47.06 ? C15 PZZ 201 A 1 HETATM 16 C C16 PZZ . . . B 2 25.781 7.863 3.474 0.7 47.86 ? C16 PZZ 201 A 1 HETATM 17 O O17 PZZ . . . B 2 26.939 8.705 3.802 0.7 36.3 ? O17 PZZ 201 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #