data_4HMH # _model_server_result.job_id TulU9DKVevQUGNP-5Ncnjw _model_server_result.datetime_utc '2025-02-18 00:35:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1204}' # _entry.id 4HMH # _exptl.entry_id 4HMH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 254.237 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-hydroxy-2-(3-hydroxyphenyl)-4H-chromen-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HMH _cell.length_a 67.294 _cell.length_b 67.294 _cell.length_c 117.005 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 C ZN ZN . A ZN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? # _chem_comp.formula 'C15 H10 O4' _chem_comp.formula_weight 254.237 _chem_comp.id F94 _chem_comp.mon_nstd_flag . _chem_comp.name 7-hydroxy-2-(3-hydroxyphenyl)-4H-chromen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,3-dihydroxyflavone # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAP CAQ F94 doub 83 n y CAP CAO F94 sing 84 n y CAQ CAC F94 sing 85 n y OAR CAO F94 sing 86 n n CAO CAN F94 doub 87 n y OAG CAD F94 doub 88 n n CAC CAD F94 sing 89 n n CAC CAB F94 doub 90 n y CAD CAE F94 sing 91 n n CAN CAB F94 sing 92 n y CAB OAA F94 sing 93 n n CAE CAF F94 doub 94 n n OAA CAF F94 sing 95 n n CAF CAH F94 sing 96 n n CAH CAK F94 doub 97 n y CAH CAJ F94 sing 98 n y CAK CAL F94 sing 99 n y CAJ CAI F94 doub 100 n y CAL OAS F94 sing 101 n n CAL CAM F94 doub 102 n y CAI CAM F94 sing 103 n y CAK H1 F94 sing 104 n n OAS H2 F94 sing 105 n n CAM H3 F94 sing 106 n n CAI H4 F94 sing 107 n n CAJ H5 F94 sing 108 n n CAN H6 F94 sing 109 n n OAR H7 F94 sing 110 n n CAP H8 F94 sing 111 n n CAQ H9 F94 sing 112 n n CAE H10 F94 sing 113 n n # _atom_sites.entry_id 4HMH _atom_sites.fract_transf_matrix[1][1] 0.01486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01486 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 1201 1 ZN ZN . D 4 SO4 A 1 1202 2 SO4 SO4 . E 5 GOL A 1 1203 1 GOL GOL . F 6 F94 A 1 1204 1 F94 F94 . G 7 PEG A 1 1205 1 PEG PEG . H 4 SO4 C 1 1201 1 SO4 SO4 . I 8 HOH A 1 1301 1 HOH HOH . I 8 HOH A 2 1302 2 HOH HOH . I 8 HOH A 3 1303 3 HOH HOH . I 8 HOH A 4 1304 4 HOH HOH . I 8 HOH A 5 1305 5 HOH HOH . I 8 HOH A 6 1306 6 HOH HOH . I 8 HOH A 7 1307 7 HOH HOH . I 8 HOH A 8 1308 10 HOH HOH . I 8 HOH A 9 1309 14 HOH HOH . I 8 HOH A 10 1310 15 HOH HOH . I 8 HOH A 11 1311 16 HOH HOH . I 8 HOH A 12 1312 17 HOH HOH . I 8 HOH A 13 1313 18 HOH HOH . I 8 HOH A 14 1314 19 HOH HOH . I 8 HOH A 15 1315 21 HOH HOH . I 8 HOH A 16 1316 22 HOH HOH . I 8 HOH A 17 1317 23 HOH HOH . I 8 HOH A 18 1318 24 HOH HOH . I 8 HOH A 19 1319 25 HOH HOH . I 8 HOH A 20 1320 26 HOH HOH . I 8 HOH A 21 1321 27 HOH HOH . I 8 HOH A 22 1322 28 HOH HOH . I 8 HOH A 23 1323 29 HOH HOH . I 8 HOH A 24 1324 30 HOH HOH . I 8 HOH A 25 1325 31 HOH HOH . I 8 HOH A 26 1326 32 HOH HOH . I 8 HOH A 27 1327 33 HOH HOH . I 8 HOH A 28 1328 35 HOH HOH . I 8 HOH A 29 1329 36 HOH HOH . I 8 HOH A 30 1330 38 HOH HOH . I 8 HOH A 31 1331 40 HOH HOH . I 8 HOH A 32 1332 41 HOH HOH . I 8 HOH A 33 1333 42 HOH HOH . I 8 HOH A 34 1334 43 HOH HOH . J 8 HOH C 1 1301 8 HOH HOH . J 8 HOH C 2 1302 12 HOH HOH . J 8 HOH C 3 1303 13 HOH HOH . J 8 HOH C 4 1304 34 HOH HOH . J 8 HOH C 5 1305 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAK F94 . . . F 6 1.469 -11.114 -9.496 1 14.57 ? CAK F94 1204 A 1 HETATM 2 C CAL F94 . . . F 6 1.457 -10.901 -8.095 1 15.13 ? CAL F94 1204 A 1 HETATM 3 O OAS F94 . . . F 6 0.37 -10.346 -7.491 1 15.94 ? OAS F94 1204 A 1 HETATM 4 C CAM F94 . . . F 6 2.553 -11.226 -7.306 1 14.29 ? CAM F94 1204 A 1 HETATM 5 C CAI F94 . . . F 6 3.662 -11.769 -7.926 1 14.25 ? CAI F94 1204 A 1 HETATM 6 C CAJ F94 . . . F 6 3.692 -11.982 -9.307 1 14.01 ? CAJ F94 1204 A 1 HETATM 7 C CAH F94 . . . F 6 2.595 -11.658 -10.108 1 14.14 ? CAH F94 1204 A 1 HETATM 8 C CAF F94 . . . F 6 2.681 -11.87 -11.491 1 14.08 ? CAF F94 1204 A 1 HETATM 9 O OAA F94 . . . F 6 3.938 -12.084 -11.938 1 14 ? OAA F94 1204 A 1 HETATM 10 C CAB F94 . . . F 6 4.224 -12.213 -13.245 1 13.59 ? CAB F94 1204 A 1 HETATM 11 C CAN F94 . . . F 6 5.565 -12.309 -13.629 1 13.38 ? CAN F94 1204 A 1 HETATM 12 C CAO F94 . . . F 6 5.882 -12.419 -14.976 1 13.36 ? CAO F94 1204 A 1 HETATM 13 O OAR F94 . . . F 6 7.18 -12.475 -15.369 1 13 ? OAR F94 1204 A 1 HETATM 14 C CAP F94 . . . F 6 4.847 -12.432 -15.915 1 13.55 ? CAP F94 1204 A 1 HETATM 15 C CAQ F94 . . . F 6 3.52 -12.352 -15.508 1 13.51 ? CAQ F94 1204 A 1 HETATM 16 C CAC F94 . . . F 6 3.186 -12.262 -14.156 1 13.35 ? CAC F94 1204 A 1 HETATM 17 C CAD F94 . . . F 6 1.858 -12.161 -13.729 1 13.52 ? CAD F94 1204 A 1 HETATM 18 O OAG F94 . . . F 6 0.894 -12.224 -14.508 1 12.83 ? OAG F94 1204 A 1 HETATM 19 C CAE F94 . . . F 6 1.62 -11.937 -12.383 1 13.83 ? CAE F94 1204 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #