data_4HMK
#
_model_server_result.job_id            qbCrrHz0IyMDx6yQCVauMg 
_model_server_result.datetime_utc      '2025-07-01 21:14:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hmk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":603}' 
#
_entry.id    4HMK 
#
_exptl.entry_id    4HMK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.25 
_cell.angle_gamma         90 
_cell.entry_id            4HMK 
_cell.length_a            84.14 
_cell.length_b            92.32 
_cell.length_c            87.21 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HMK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,CA 1 1 
B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,DA 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? 
metalc ? metalc5 A O THR 254 A THR 254 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 D NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? 
metalc ? metalc10 C OXT LEU . A LEU 601 1_555 E NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? 
metalc ? metalc11 B O GLY 20 B GLY 20 1_555 T NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc12 B O ALA 22 B ALA 22 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? 
metalc ? metalc13 B O VAL 23 B VAL 23 1_555 T NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc14 B OD1 ASN 27 B ASN 27 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? 
metalc ? metalc15 B O THR 254 B THR 254 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? 
metalc ? metalc16 B OG1 THR 254 B THR 254 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? 
metalc ? metalc17 B OD1 ASN 286 B ASN 286 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.159 ? 
metalc ? metalc18 B O ALA 351 B ALA 351 1_555 T NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc19 B OG1 THR 354 B THR 354 1_555 T NA NA . B NA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc20 S OXT LEU . B LEU 603 1_555 U NA NA . B NA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4HMK 
_atom_sites.fract_transf_matrix[1][1]    0.011885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000883 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011498 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LEU A 1 601 601 LEU LEU . 
D 3 NA A 1 602 751 NA NA . 
E 3 NA A 1 603 752 NA NA . 
F 4 BR A 1 604 753 BR BR . 
G 4 BR A 1 605 754 BR BR . 
H 5 BOG A 1 606 702 BOG BOG . 
I 5 BOG A 1 607 703 BOG BOG . 
J 5 BOG A 1 608 704 BOG BOG . 
K 5 BOG A 1 609 706 BOG BOG . 
L 5 BOG A 1 610 708 BOG BOG . 
M 4 BR A 1 611 755 BR BR . 
N 4 BR A 1 612 757 BR BR . 
O 4 BR A 1 613 758 BR BR . 
P 4 BR A 1 614 759 BR BR . 
Q 5 BOG B 1 601 705 BOG BOG . 
R 5 BOG B 1 602 707 BOG BOG . 
S 2 LEU B 1 603 601 LEU LEU . 
T 3 NA B 1 604 751 NA NA . 
U 3 NA B 1 605 752 NA NA . 
V 4 BR B 1 606 753 BR BR . 
W 4 BR B 1 607 754 BR BR . 
X 5 BOG B 1 608 703 BOG BOG . 
Y 5 BOG B 1 609 704 BOG BOG . 
Z 4 BR B 1 610 755 BR BR . 
AA 4 BR B 1 611 756 BR BR . 
BA 4 BR B 1 612 757 BR BR . 
CA 6 HOH A 1 701 1 HOH HOH . 
CA 6 HOH A 2 702 2 HOH HOH . 
CA 6 HOH A 3 703 3 HOH HOH . 
CA 6 HOH A 4 704 4 HOH HOH . 
CA 6 HOH A 5 705 5 HOH HOH . 
CA 6 HOH A 6 706 6 HOH HOH . 
CA 6 HOH A 7 707 7 HOH HOH . 
DA 6 HOH B 1 701 1 HOH HOH . 
DA 6 HOH B 2 702 2 HOH HOH . 
DA 6 HOH B 3 703 3 HOH HOH . 
DA 6 HOH B 4 704 4 HOH HOH . 
DA 6 HOH B 5 705 5 HOH HOH . 
DA 6 HOH B 6 706 6 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -14.58 
_atom_site.Cartn_y               14.584 
_atom_site.Cartn_z               -4.445 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        46.62 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           603 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#