data_4HMN # _model_server_result.job_id YqdNeBoiwuaNzbLZDa9iIA _model_server_result.datetime_utc '2024-11-22 05:04:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4HMN # _exptl.entry_id 4HMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HMN _cell.length_a 57.956 _cell.length_b 64.068 _cell.length_c 96.404 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 289 n n PA O2A NAP sing 290 n n PA O5B NAP sing 291 n n PA O3 NAP sing 292 n n O2A HOA2 NAP sing 293 n n O5B C5B NAP sing 294 n n C5B C4B NAP sing 295 n n C5B H51A NAP sing 296 n n C5B H52A NAP sing 297 n n C4B O4B NAP sing 298 n n C4B C3B NAP sing 299 n n C4B H4B NAP sing 300 n n O4B C1B NAP sing 301 n n C3B O3B NAP sing 302 n n C3B C2B NAP sing 303 n n C3B H3B NAP sing 304 n n O3B HO3A NAP sing 305 n n C2B O2B NAP sing 306 n n C2B C1B NAP sing 307 n n C2B H2B NAP sing 308 n n O2B P2B NAP sing 309 n n C1B N9A NAP sing 310 n n C1B H1B NAP sing 311 n n N9A C8A NAP sing 312 n y N9A C4A NAP sing 313 n y C8A N7A NAP doub 314 n y C8A H8A NAP sing 315 n n N7A C5A NAP sing 316 n y C5A C6A NAP sing 317 n y C5A C4A NAP doub 318 n y C6A N6A NAP sing 319 n n C6A N1A NAP doub 320 n y N6A H61A NAP sing 321 n n N6A H62A NAP sing 322 n n N1A C2A NAP sing 323 n y C2A N3A NAP doub 324 n y C2A H2A NAP sing 325 n n N3A C4A NAP sing 326 n y O3 PN NAP sing 327 n n PN O1N NAP doub 328 n n PN O2N NAP sing 329 n n PN O5D NAP sing 330 n n O5D C5D NAP sing 331 n n C5D C4D NAP sing 332 n n C5D H51N NAP sing 333 n n C5D H52N NAP sing 334 n n C4D O4D NAP sing 335 n n C4D C3D NAP sing 336 n n C4D H4D NAP sing 337 n n O4D C1D NAP sing 338 n n C3D O3D NAP sing 339 n n C3D C2D NAP sing 340 n n C3D H3D NAP sing 341 n n O3D HO3N NAP sing 342 n n C2D O2D NAP sing 343 n n C2D C1D NAP sing 344 n n C2D H2D NAP sing 345 n n O2D HO2N NAP sing 346 n n C1D N1N NAP sing 347 n n C1D H1D NAP sing 348 n n N1N C2N NAP sing 349 n y N1N C6N NAP doub 350 n y C2N C3N NAP doub 351 n y C2N H2N NAP sing 352 n n C3N C7N NAP sing 353 n n C3N C4N NAP sing 354 n y C7N O7N NAP doub 355 n n C7N N7N NAP sing 356 n n N7N H71N NAP sing 357 n n N7N H72N NAP sing 358 n n C4N C5N NAP doub 359 n y C4N H4N NAP sing 360 n n C5N C6N NAP sing 361 n y C5N H5N NAP sing 362 n n C6N H6N NAP sing 363 n n P2B O1X NAP doub 364 n n P2B O2X NAP sing 365 n n P2B O3X NAP sing 366 n n O2X HOP2 NAP sing 367 n n O3X HOP3 NAP sing 368 n n # _atom_sites.entry_id 4HMN _atom_sites.fract_transf_matrix[1][1] 0.017254 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 401 700 NAP NAP . C 3 16J A 1 402 1 16J DRG . D 4 EDO A 1 403 1 EDO EDO . E 5 HOH A 1 501 1 HOH HOH . E 5 HOH A 2 502 2 HOH HOH . E 5 HOH A 3 503 3 HOH HOH . E 5 HOH A 4 504 5 HOH HOH . E 5 HOH A 5 505 6 HOH HOH . E 5 HOH A 6 506 7 HOH HOH . E 5 HOH A 7 507 8 HOH HOH . E 5 HOH A 8 508 9 HOH HOH . E 5 HOH A 9 509 10 HOH HOH . E 5 HOH A 10 510 11 HOH HOH . E 5 HOH A 11 511 12 HOH HOH . E 5 HOH A 12 512 13 HOH HOH . E 5 HOH A 13 513 14 HOH HOH . E 5 HOH A 14 514 15 HOH HOH . E 5 HOH A 15 515 16 HOH HOH . E 5 HOH A 16 516 18 HOH HOH . E 5 HOH A 17 517 19 HOH HOH . E 5 HOH A 18 518 20 HOH HOH . E 5 HOH A 19 519 21 HOH HOH . E 5 HOH A 20 520 22 HOH HOH . E 5 HOH A 21 521 23 HOH HOH . E 5 HOH A 22 522 24 HOH HOH . E 5 HOH A 23 523 25 HOH HOH . E 5 HOH A 24 524 26 HOH HOH . E 5 HOH A 25 525 27 HOH HOH . E 5 HOH A 26 526 28 HOH HOH . E 5 HOH A 27 527 29 HOH HOH . E 5 HOH A 28 528 30 HOH HOH . E 5 HOH A 29 529 31 HOH HOH . E 5 HOH A 30 530 32 HOH HOH . E 5 HOH A 31 531 33 HOH HOH . E 5 HOH A 32 532 34 HOH HOH . E 5 HOH A 33 533 36 HOH HOH . E 5 HOH A 34 534 37 HOH HOH . E 5 HOH A 35 535 38 HOH HOH . E 5 HOH A 36 536 39 HOH HOH . E 5 HOH A 37 537 40 HOH HOH . E 5 HOH A 38 538 41 HOH HOH . E 5 HOH A 39 539 42 HOH HOH . E 5 HOH A 40 540 43 HOH HOH . E 5 HOH A 41 541 44 HOH HOH . E 5 HOH A 42 542 45 HOH HOH . E 5 HOH A 43 543 46 HOH HOH . E 5 HOH A 44 544 47 HOH HOH . E 5 HOH A 45 545 48 HOH HOH . E 5 HOH A 46 546 49 HOH HOH . E 5 HOH A 47 547 51 HOH HOH . E 5 HOH A 48 548 52 HOH HOH . E 5 HOH A 49 549 53 HOH HOH . E 5 HOH A 50 550 54 HOH HOH . E 5 HOH A 51 551 55 HOH HOH . E 5 HOH A 52 552 57 HOH HOH . E 5 HOH A 53 553 58 HOH HOH . E 5 HOH A 54 554 60 HOH HOH . E 5 HOH A 55 555 61 HOH HOH . E 5 HOH A 56 556 64 HOH HOH . E 5 HOH A 57 557 65 HOH HOH . E 5 HOH A 58 558 66 HOH HOH . E 5 HOH A 59 559 67 HOH HOH . E 5 HOH A 60 560 69 HOH HOH . E 5 HOH A 61 561 70 HOH HOH . E 5 HOH A 62 562 71 HOH HOH . E 5 HOH A 63 563 72 HOH HOH . E 5 HOH A 64 564 73 HOH HOH . E 5 HOH A 65 565 74 HOH HOH . E 5 HOH A 66 566 75 HOH HOH . E 5 HOH A 67 567 76 HOH HOH . E 5 HOH A 68 568 77 HOH HOH . E 5 HOH A 69 569 78 HOH HOH . E 5 HOH A 70 570 79 HOH HOH . E 5 HOH A 71 571 80 HOH HOH . E 5 HOH A 72 572 81 HOH HOH . E 5 HOH A 73 573 82 HOH HOH . E 5 HOH A 74 574 83 HOH HOH . E 5 HOH A 75 575 84 HOH HOH . E 5 HOH A 76 576 85 HOH HOH . E 5 HOH A 77 577 86 HOH HOH . E 5 HOH A 78 578 87 HOH HOH . E 5 HOH A 79 579 88 HOH HOH . E 5 HOH A 80 580 90 HOH HOH . E 5 HOH A 81 581 91 HOH HOH . E 5 HOH A 82 582 92 HOH HOH . E 5 HOH A 83 583 93 HOH HOH . E 5 HOH A 84 584 94 HOH HOH . E 5 HOH A 85 585 96 HOH HOH . E 5 HOH A 86 586 97 HOH HOH . E 5 HOH A 87 587 98 HOH HOH . E 5 HOH A 88 588 99 HOH HOH . E 5 HOH A 89 589 100 HOH HOH . E 5 HOH A 90 590 101 HOH HOH . E 5 HOH A 91 591 102 HOH HOH . E 5 HOH A 92 592 103 HOH HOH . E 5 HOH A 93 593 104 HOH HOH . E 5 HOH A 94 594 105 HOH HOH . E 5 HOH A 95 595 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 1.633 3.507 2.781 1 20.26 ? PA NAP 401 A 1 HETATM 2 O O1A NAP . . . B 2 3.072 3.276 2.771 1 18.53 ? O1A NAP 401 A 1 HETATM 3 O O2A NAP . . . B 2 1.18 4.877 2.733 1 20.16 ? O2A NAP 401 A 1 HETATM 4 O O5B NAP . . . B 2 0.983 2.545 1.582 1 19.6 ? O5B NAP 401 A 1 HETATM 5 C C5B NAP . . . B 2 -0.391 2.679 1.198 1 21.41 ? C5B NAP 401 A 1 HETATM 6 C C4B NAP . . . B 2 -0.785 1.602 0.115 1 21.43 ? C4B NAP 401 A 1 HETATM 7 O O4B NAP . . . B 2 0.123 1.824 -0.915 1 20.46 ? O4B NAP 401 A 1 HETATM 8 C C3B NAP . . . B 2 -0.396 0.271 0.692 1 20.22 ? C3B NAP 401 A 1 HETATM 9 O O3B NAP . . . B 2 -1.536 -0.314 1.31 1 18.37 ? O3B NAP 401 A 1 HETATM 10 C C2B NAP . . . B 2 0.085 -0.491 -0.514 1 20.75 ? C2B NAP 401 A 1 HETATM 11 O O2B NAP . . . B 2 -0.933 -1.375 -1.044 1 21.19 ? O2B NAP 401 A 1 HETATM 12 C C1B NAP . . . B 2 0.313 0.591 -1.524 1 21.99 ? C1B NAP 401 A 1 HETATM 13 N N9A NAP . . . B 2 1.639 0.513 -2.262 1 23.13 ? N9A NAP 401 A 1 HETATM 14 C C8A NAP . . . B 2 2.854 0.183 -1.875 1 24.23 ? C8A NAP 401 A 1 HETATM 15 N N7A NAP . . . B 2 3.705 0.273 -2.903 1 24.06 ? N7A NAP 401 A 1 HETATM 16 C C5A NAP . . . B 2 2.998 0.682 -3.952 1 25.57 ? C5A NAP 401 A 1 HETATM 17 C C6A NAP . . . B 2 3.334 0.92 -5.291 1 25.29 ? C6A NAP 401 A 1 HETATM 18 N N6A NAP . . . B 2 4.61 0.815 -5.747 1 24.67 ? N6A NAP 401 A 1 HETATM 19 N N1A NAP . . . B 2 2.331 1.25 -6.183 1 24.51 ? N1A NAP 401 A 1 HETATM 20 C C2A NAP . . . B 2 0.903 1.372 -5.83 1 26.92 ? C2A NAP 401 A 1 HETATM 21 N N3A NAP . . . B 2 0.636 1.232 -4.383 1 26.02 ? N3A NAP 401 A 1 HETATM 22 C C4A NAP . . . B 2 1.688 0.825 -3.525 1 24.94 ? C4A NAP 401 A 1 HETATM 23 O O3 NAP . . . B 2 0.869 2.716 3.932 1 22.18 ? O3 NAP 401 A 1 HETATM 24 P PN NAP . . . B 2 0.803 3.043 5.567 1 20.46 ? PN NAP 401 A 1 HETATM 25 O O1N NAP . . . B 2 0.579 1.645 6.077 1 19.41 ? O1N NAP 401 A 1 HETATM 26 O O2N NAP . . . B 2 -0.166 4.133 5.894 1 17.99 ? O2N NAP 401 A 1 HETATM 27 O O5D NAP . . . B 2 2.235 3.539 5.961 1 21.65 ? O5D NAP 401 A 1 HETATM 28 C C5D NAP . . . B 2 3.394 2.735 5.991 1 24.33 ? C5D NAP 401 A 1 HETATM 29 C C4D NAP . . . B 2 3.922 2.372 7.436 1 24.36 ? C4D NAP 401 A 1 HETATM 30 O O4D NAP . . . B 2 4.238 3.468 8.369 1 23.2 ? O4D NAP 401 A 1 HETATM 31 C C3D NAP . . . B 2 2.807 1.614 8.079 1 23.05 ? C3D NAP 401 A 1 HETATM 32 O O3D NAP . . . B 2 2.807 0.33 7.433 1 25.64 ? O3D NAP 401 A 1 HETATM 33 C C2D NAP . . . B 2 3.349 1.548 9.509 1 22.98 ? C2D NAP 401 A 1 HETATM 34 O O2D NAP . . . B 2 4.527 0.719 9.56 1 22.24 ? O2D NAP 401 A 1 HETATM 35 C C1D NAP . . . B 2 3.815 3.012 9.656 1 22.87 ? C1D NAP 401 A 1 HETATM 36 N N1N NAP . . . B 2 2.737 3.9 10.086 1 21.72 ? N1N NAP 401 A 1 HETATM 37 C C2N NAP . . . B 2 2.866 4.463 11.338 1 22.47 ? C2N NAP 401 A 1 HETATM 38 C C3N NAP . . . B 2 1.926 5.306 11.879 1 20.69 ? C3N NAP 401 A 1 HETATM 39 C C7N NAP . . . B 2 2.134 5.951 13.261 1 20.08 ? C7N NAP 401 A 1 HETATM 40 O O7N NAP . . . B 2 1.204 6.487 13.859 1 19.62 ? O7N NAP 401 A 1 HETATM 41 N N7N NAP . . . B 2 3.393 6.025 13.696 1 19.97 ? N7N NAP 401 A 1 HETATM 42 C C4N NAP . . . B 2 0.813 5.556 11.116 1 21.72 ? C4N NAP 401 A 1 HETATM 43 C C5N NAP . . . B 2 0.668 5.003 9.842 1 22.75 ? C5N NAP 401 A 1 HETATM 44 C C6N NAP . . . B 2 1.617 4.164 9.311 1 22.22 ? C6N NAP 401 A 1 HETATM 45 P P2B NAP . . . B 2 -0.509 -2.947 -1.198 1 23.51 ? P2B NAP 401 A 1 HETATM 46 O O1X NAP . . . B 2 -1.688 -3.608 -1.988 1 23.77 ? O1X NAP 401 A 1 HETATM 47 O O2X NAP . . . B 2 0.791 -3.03 -2.213 1 19.39 ? O2X NAP 401 A 1 HETATM 48 O O3X NAP . . . B 2 -0.144 -3.59 0.148 1 23.01 ? O3X NAP 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #