data_4HMO # _model_server_result.job_id Tgols4MHrdUQ5dFqebLnOg _model_server_result.datetime_utc '2024-10-16 22:24:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hmo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 4HMO # _exptl.entry_id 4HMO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HMO _cell.length_a 43.644 _cell.length_b 63.442 _cell.length_c 135.803 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HMO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H26 N2 O6' _chem_comp.formula_weight 282.334 _chem_comp.id B3P _chem_comp.mon_nstd_flag . _chem_comp.name 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 B3P sing 70 n n C1 C3 B3P sing 71 n n C1 H11 B3P sing 72 n n C1 H12 B3P sing 73 n n C2 N2 B3P sing 74 n n C2 H21 B3P sing 75 n n C2 H22 B3P sing 76 n n C3 N1 B3P sing 77 n n C3 H31 B3P sing 78 n n C3 H32 B3P sing 79 n n N1 C4 B3P sing 80 n n N1 HN1 B3P sing 81 n n C4 C5 B3P sing 82 n n C4 C6 B3P sing 83 n n C4 C7 B3P sing 84 n n C5 O4 B3P sing 85 n n C5 H51 B3P sing 86 n n C5 H52 B3P sing 87 n n C6 O5 B3P sing 88 n n C6 H61 B3P sing 89 n n C6 H62 B3P sing 90 n n C7 O6 B3P sing 91 n n C7 H71 B3P sing 92 n n C7 H72 B3P sing 93 n n N2 C8 B3P sing 94 n n N2 HN2 B3P sing 95 n n C8 C9 B3P sing 96 n n C8 C10 B3P sing 97 n n C8 C11 B3P sing 98 n n C9 O1 B3P sing 99 n n C9 H91 B3P sing 100 n n C9 H92 B3P sing 101 n n C10 O2 B3P sing 102 n n C10 H101 B3P sing 103 n n C10 H102 B3P sing 104 n n C11 O3 B3P sing 105 n n C11 H111 B3P sing 106 n n C11 H112 B3P sing 107 n n O1 HO1 B3P sing 108 n n O2 HO2 B3P sing 109 n n O3 HO3 B3P sing 110 n n O4 HO4 B3P sing 111 n n O5 HO5 B3P sing 112 n n O6 HO6 B3P sing 113 n n # _atom_sites.entry_id 4HMO _atom_sites.fract_transf_matrix[1][1] 0.022913 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 B3P A 1 403 1 B3P B3P . E 4 HOH A 1 501 1 HOH HOH . E 4 HOH A 2 502 2 HOH HOH . E 4 HOH A 3 503 3 HOH HOH . E 4 HOH A 4 504 4 HOH HOH . E 4 HOH A 5 505 5 HOH HOH . E 4 HOH A 6 506 6 HOH HOH . E 4 HOH A 7 507 7 HOH HOH . E 4 HOH A 8 508 8 HOH HOH . E 4 HOH A 9 509 9 HOH HOH . E 4 HOH A 10 510 10 HOH HOH . E 4 HOH A 11 511 11 HOH HOH . E 4 HOH A 12 512 12 HOH HOH . E 4 HOH A 13 513 13 HOH HOH . E 4 HOH A 14 514 14 HOH HOH . E 4 HOH A 15 515 15 HOH HOH . E 4 HOH A 16 516 16 HOH HOH . E 4 HOH A 17 517 17 HOH HOH . E 4 HOH A 18 518 18 HOH HOH . E 4 HOH A 19 519 19 HOH HOH . E 4 HOH A 20 520 20 HOH HOH . E 4 HOH A 21 521 21 HOH HOH . E 4 HOH A 22 522 22 HOH HOH . E 4 HOH A 23 523 23 HOH HOH . E 4 HOH A 24 524 24 HOH HOH . E 4 HOH A 25 525 25 HOH HOH . E 4 HOH A 26 526 26 HOH HOH . E 4 HOH A 27 527 27 HOH HOH . E 4 HOH A 28 528 28 HOH HOH . E 4 HOH A 29 529 29 HOH HOH . E 4 HOH A 30 530 30 HOH HOH . E 4 HOH A 31 531 31 HOH HOH . E 4 HOH A 32 532 32 HOH HOH . E 4 HOH A 33 533 33 HOH HOH . E 4 HOH A 34 534 34 HOH HOH . E 4 HOH A 35 535 35 HOH HOH . E 4 HOH A 36 536 36 HOH HOH . E 4 HOH A 37 537 37 HOH HOH . E 4 HOH A 38 538 38 HOH HOH . E 4 HOH A 39 539 39 HOH HOH . E 4 HOH A 40 540 40 HOH HOH . E 4 HOH A 41 541 41 HOH HOH . E 4 HOH A 42 542 42 HOH HOH . E 4 HOH A 43 543 43 HOH HOH . E 4 HOH A 44 544 44 HOH HOH . E 4 HOH A 45 545 45 HOH HOH . E 4 HOH A 46 546 46 HOH HOH . E 4 HOH A 47 547 47 HOH HOH . E 4 HOH A 48 548 48 HOH HOH . E 4 HOH A 49 549 49 HOH HOH . E 4 HOH A 50 550 50 HOH HOH . E 4 HOH A 51 551 51 HOH HOH . E 4 HOH A 52 552 52 HOH HOH . E 4 HOH A 53 553 53 HOH HOH . E 4 HOH A 54 554 54 HOH HOH . E 4 HOH A 55 555 55 HOH HOH . E 4 HOH A 56 556 56 HOH HOH . E 4 HOH A 57 557 57 HOH HOH . E 4 HOH A 58 558 58 HOH HOH . E 4 HOH A 59 559 59 HOH HOH . E 4 HOH A 60 560 60 HOH HOH . E 4 HOH A 61 561 61 HOH HOH . E 4 HOH A 62 562 62 HOH HOH . E 4 HOH A 63 563 63 HOH HOH . E 4 HOH A 64 564 64 HOH HOH . E 4 HOH A 65 565 65 HOH HOH . E 4 HOH A 66 566 66 HOH HOH . E 4 HOH A 67 567 67 HOH HOH . E 4 HOH A 68 568 68 HOH HOH . E 4 HOH A 69 569 69 HOH HOH . E 4 HOH A 70 570 70 HOH HOH . E 4 HOH A 71 571 71 HOH HOH . E 4 HOH A 72 572 72 HOH HOH . E 4 HOH A 73 573 73 HOH HOH . E 4 HOH A 74 574 74 HOH HOH . E 4 HOH A 75 575 75 HOH HOH . E 4 HOH A 76 576 76 HOH HOH . E 4 HOH A 77 577 77 HOH HOH . E 4 HOH A 78 578 78 HOH HOH . E 4 HOH A 79 579 79 HOH HOH . E 4 HOH A 80 580 80 HOH HOH . E 4 HOH A 81 581 81 HOH HOH . E 4 HOH A 82 582 82 HOH HOH . E 4 HOH A 83 583 83 HOH HOH . E 4 HOH A 84 584 84 HOH HOH . E 4 HOH A 85 585 85 HOH HOH . E 4 HOH A 86 586 86 HOH HOH . E 4 HOH A 87 587 87 HOH HOH . E 4 HOH A 88 588 88 HOH HOH . E 4 HOH A 89 589 89 HOH HOH . E 4 HOH A 90 590 90 HOH HOH . E 4 HOH A 91 591 91 HOH HOH . E 4 HOH A 92 592 92 HOH HOH . E 4 HOH A 93 593 93 HOH HOH . E 4 HOH A 94 594 94 HOH HOH . E 4 HOH A 95 595 95 HOH HOH . E 4 HOH A 96 596 96 HOH HOH . E 4 HOH A 97 597 97 HOH HOH . E 4 HOH A 98 598 98 HOH HOH . E 4 HOH A 99 599 99 HOH HOH . E 4 HOH A 100 600 100 HOH HOH . E 4 HOH A 101 601 101 HOH HOH . E 4 HOH A 102 602 102 HOH HOH . E 4 HOH A 103 603 103 HOH HOH . E 4 HOH A 104 604 104 HOH HOH . E 4 HOH A 105 605 105 HOH HOH . E 4 HOH A 106 606 106 HOH HOH . E 4 HOH A 107 607 107 HOH HOH . E 4 HOH A 108 608 108 HOH HOH . E 4 HOH A 109 609 109 HOH HOH . E 4 HOH A 110 610 110 HOH HOH . E 4 HOH A 111 611 111 HOH HOH . E 4 HOH A 112 612 112 HOH HOH . E 4 HOH A 113 613 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 B3P . A . D 3 19.656 -9.027 -22.639 0.46 47.82 ? C1 B3P 403 A 1 HETATM 2 C C1 B3P . B . D 3 16.931 -4.796 -20.993 0.54 42.87 ? C1 B3P 403 A 1 HETATM 3 C C2 B3P . A . D 3 18.292 -8.365 -22.583 0.46 48.41 ? C2 B3P 403 A 1 HETATM 4 C C2 B3P . B . D 3 16.749 -5.31 -22.414 0.54 42.89 ? C2 B3P 403 A 1 HETATM 5 C C3 B3P . A . D 3 20.633 -8.71 -21.524 0.46 48.27 ? C3 B3P 403 A 1 HETATM 6 C C3 B3P . B . D 3 17.6 -3.449 -20.802 0.54 39.7 ? C3 B3P 403 A 1 HETATM 7 N N1 B3P . A . D 3 21.259 -9.845 -20.839 0.46 48.77 ? N1 B3P 403 A 1 HETATM 8 N N1 B3P . B . D 3 17.575 -2.52 -21.939 0.54 42.94 ? N1 B3P 403 A 1 HETATM 9 C C4 B3P . A . D 3 21.986 -9.432 -19.597 0.46 47.72 ? C4 B3P 403 A 1 HETATM 10 C C4 B3P . B . D 3 18.883 -2.492 -22.671 0.54 46.36 ? C4 B3P 403 A 1 HETATM 11 C C5 B3P . A . D 3 21.463 -8.079 -19.107 0.46 46.29 ? C5 B3P 403 A 1 HETATM 12 C C5 B3P . B . D 3 19.946 -3.246 -21.867 0.54 45.08 ? C5 B3P 403 A 1 HETATM 13 C C6 B3P . A . D 3 23.518 -9.339 -19.857 0.46 44.92 ? C6 B3P 403 A 1 HETATM 14 C C6 B3P . B . D 3 18.751 -3.113 -24.091 0.54 45.61 ? C6 B3P 403 A 1 HETATM 15 C C7 B3P . A . D 3 21.743 -10.471 -18.521 0.46 45.77 ? C7 B3P 403 A 1 HETATM 16 C C7 B3P . B . D 3 19.29 -1.047 -22.826 0.54 43.1 ? C7 B3P 403 A 1 HETATM 17 N N2 B3P . A . D 3 18.197 -7.001 -23.084 0.46 48.33 ? N2 B3P 403 A 1 HETATM 18 N N2 B3P . B . D 3 16.888 -6.744 -22.644 0.54 42.96 ? N2 B3P 403 A 1 HETATM 19 C C8 B3P . A . D 3 18.616 -6.897 -24.495 0.46 48.49 ? C8 B3P 403 A 1 HETATM 20 C C8 B3P . B . D 3 18.256 -7.155 -23.033 0.54 46.8 ? C8 B3P 403 A 1 HETATM 21 C C9 B3P . A . D 3 18.485 -8.28 -25.144 0.46 50.91 ? C9 B3P 403 A 1 HETATM 22 C C9 B3P . B . D 3 19.236 -6.798 -21.905 0.54 48.15 ? C9 B3P 403 A 1 HETATM 23 C C10 B3P . A . D 3 17.74 -5.936 -25.231 0.46 49.74 ? C10 B3P 403 A 1 HETATM 24 C C10 B3P . B . D 3 18.335 -8.637 -23.224 0.54 48.71 ? C10 B3P 403 A 1 HETATM 25 C C11 B3P . A . D 3 20.072 -6.449 -24.594 0.46 50.34 ? C11 B3P 403 A 1 HETATM 26 C C11 B3P . B . D 3 18.703 -6.415 -24.297 0.54 48.86 ? C11 B3P 403 A 1 HETATM 27 O O1 B3P . A . D 3 19.485 -9.182 -24.927 0.46 51.34 ? O1 B3P 403 A 1 HETATM 28 O O1 B3P . B . D 3 19.952 -7.816 -21.34 0.54 47.2 ? O1 B3P 403 A 1 HETATM 29 O O2 B3P . A . D 3 17.6 -4.658 -24.684 0.46 48.09 ? O2 B3P 403 A 1 HETATM 30 O O2 B3P . B . D 3 19.535 -9.165 -23.721 0.54 53.26 ? O2 B3P 403 A 1 HETATM 31 O O3 B3P . A . D 3 20.674 -6.503 -25.837 0.46 50.88 ? O3 B3P 403 A 1 HETATM 32 O O3 B3P . B . D 3 17.758 -6.121 -25.267 0.54 51.23 ? O3 B3P 403 A 1 HETATM 33 O O4 B3P . A . D 3 21.288 -7.061 -20.06 0.46 43.28 ? O4 B3P 403 A 1 HETATM 34 O O4 B3P . B . D 3 21.08 -3.716 -22.548 0.54 50.32 ? O4 B3P 403 A 1 HETATM 35 O O5 B3P . A . D 3 23.959 -9.467 -21.173 0.46 39.99 ? O5 B3P 403 A 1 HETATM 36 O O5 B3P . B . D 3 19.87 -3.064 -24.92 0.54 50.75 ? O5 B3P 403 A 1 HETATM 37 O O6 B3P . A . D 3 20.932 -11.584 -18.856 0.46 29.35 ? O6 B3P 403 A 1 HETATM 38 O O6 B3P . B . D 3 18.339 -0.105 -22.363 0.54 43.1 ? O6 B3P 403 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 38 #