data_4HNA # _model_server_result.job_id wKe5CwaPV_pgI3R5wmxbOQ _model_server_result.datetime_utc '2024-11-15 10:37:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hna # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 4HNA # _exptl.entry_id 4HNA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HNA _cell.length_a 77.05 _cell.length_b 160.54 _cell.length_c 174.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O1G GTP . A GTP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 E O1B GTP . A GTP 600 1_555 F MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 G O2B GDP . B GDP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc4 G O3B GDP . B GDP 501 1_555 I AL ALF . B ALF 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 H MG MG . B MG 502 1_555 I F3 ALF . B ALF 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc6 D OG1 THR 92 K THR 92 1_555 K MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc7 D OG SER 202 K SER 202 1_555 K MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? metalc ? metalc8 J O2B ADP . K ADP 401 1_555 K MG MG . K MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 J O3B ADP . K ADP 401 1_555 L AL ALF . K ALF 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc10 K MG MG . K MG 402 1_555 L F4 ALF . K ALF 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 K MG MG . K MG 402 1_555 M O HOH . K HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc12 K MG MG . K MG 402 1_555 M O HOH . K HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 222 n n PG O2G GTP sing 223 n n PG O3G GTP sing 224 n n PG O3B GTP sing 225 n n O2G HOG2 GTP sing 226 n n O3G HOG3 GTP sing 227 n n O3B PB GTP sing 228 n n PB O1B GTP doub 229 n n PB O2B GTP sing 230 n n PB O3A GTP sing 231 n n O2B HOB2 GTP sing 232 n n O3A PA GTP sing 233 n n PA O1A GTP doub 234 n n PA O2A GTP sing 235 n n PA O5' GTP sing 236 n n O2A HOA2 GTP sing 237 n n O5' C5' GTP sing 238 n n C5' C4' GTP sing 239 n n C5' H5' GTP sing 240 n n C5' "H5''" GTP sing 241 n n C4' O4' GTP sing 242 n n C4' C3' GTP sing 243 n n C4' H4' GTP sing 244 n n O4' C1' GTP sing 245 n n C3' O3' GTP sing 246 n n C3' C2' GTP sing 247 n n C3' H3' GTP sing 248 n n O3' HO3' GTP sing 249 n n C2' O2' GTP sing 250 n n C2' C1' GTP sing 251 n n C2' H2' GTP sing 252 n n O2' HO2' GTP sing 253 n n C1' N9 GTP sing 254 n n C1' H1' GTP sing 255 n n N9 C8 GTP sing 256 n y N9 C4 GTP sing 257 n y C8 N7 GTP doub 258 n y C8 H8 GTP sing 259 n n N7 C5 GTP sing 260 n y C5 C6 GTP sing 261 n n C5 C4 GTP doub 262 n y C6 O6 GTP doub 263 n n C6 N1 GTP sing 264 n n N1 C2 GTP sing 265 n n N1 HN1 GTP sing 266 n n C2 N2 GTP sing 267 n n C2 N3 GTP doub 268 n n N2 HN21 GTP sing 269 n n N2 HN22 GTP sing 270 n n N3 C4 GTP sing 271 n n # _atom_sites.entry_id 4HNA _atom_sites.fract_transf_matrix[1][1] 0.012979 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 GTP A 1 600 600 GTP GTP . F 6 MG A 1 601 601 MG MG . G 7 GDP B 1 501 600 GDP GDP . H 6 MG B 1 502 601 MG MG . I 8 ALF B 1 503 650 ALF ALF . J 9 ADP K 1 401 600 ADP ADP . K 6 MG K 1 402 601 MG MG . L 8 ALF K 1 403 650 ALF ALF . M 10 HOH K 1 501 610 HOH HOH . M 10 HOH K 2 502 611 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . E 5 -7.381 54.385 25.168 1 65.88 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . E 5 -8.342 53.65 24.282 1 65.64 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . E 5 -8.039 55.614 25.72 1 70.42 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . E 5 -6.084 54.7 24.481 1 59.15 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . E 5 -7.035 53.485 26.451 1 68.73 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . E 5 -7.601 52.171 26.899 1 69.64 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . E 5 -9.09 52.128 26.696 1 70.12 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . E 5 -7.23 51.971 28.34 1 69.62 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . E 5 -6.923 51.032 25.998 1 68.51 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . E 5 -6.762 49.553 26.158 1 68.45 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . E 5 -7.561 48.872 25.087 1 69.73 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . E 5 -7.254 49.122 27.512 1 74.05 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . E 5 -5.203 49.203 26.015 1 66.49 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . E 5 -4.727 48.329 24.978 1 64.98 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . E 5 -3.897 47.26 25.643 1 61.22 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . E 5 -4.717 46.499 26.556 1 58.55 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . E 5 -3.322 46.235 24.675 1 63.26 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . E 5 -2.191 45.615 25.262 1 63.96 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . E 5 -4.454 45.22 24.578 1 64.53 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . E 5 -3.989 43.935 24.173 1 68.1 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . E 5 -4.97 45.212 26.018 1 58.48 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . E 5 -6.406 44.908 26.131 1 53.33 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . E 5 -7.467 45.63 25.656 1 51.94 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . E 5 -8.624 45.059 25.877 1 52.73 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . E 5 -8.308 43.889 26.548 1 54.23 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . E 5 -9.146 42.847 27.141 1 58.22 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . E 5 -10.368 42.799 27.144 1 61.4 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . E 5 -8.41 41.865 27.781 1 58.03 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . E 5 -7.044 41.844 27.862 1 58.1 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . E 5 -6.492 40.821 28.516 1 59.27 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . E 5 -6.259 42.788 27.329 1 56.64 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . E 5 -6.948 43.78 26.705 1 53.89 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #