data_4HNT # _model_server_result.job_id nC3QzVu6_jbNrr5_BPvLlA _model_server_result.datetime_utc '2024-11-18 06:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hnt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1202}' # _entry.id 4HNT # _exptl.entry_id 4HNT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.86 _cell.angle_gamma 90 _cell.entry_id 4HNT _cell.length_a 96.23 _cell.length_b 256.283 _cell.length_c 126.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HNT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 565 A ASP 572 1_555 F MN MN . A MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A NZ LYS 735 A LYS 741 1_555 F MN MN . A MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 A NE2 HIS 764 A HIS 771 1_555 F MN MN . A MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc4 A NE2 HIS 766 A HIS 773 1_555 F MN MN . A MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 B OD1 ASP 565 B ASP 572 1_555 I MN MN . B MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc6 B NZ LYS 735 B LYS 741 1_555 I MN MN . B MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc7 B NE2 HIS 764 B HIS 771 1_555 I MN MN . B MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 B NE2 HIS 766 B HIS 773 1_555 I MN MN . B MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc9 C OD1 ASP 565 C ASP 572 1_555 J MN MN . C MN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 C NZ LYS 735 C LYS 741 1_555 J MN MN . C MN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc11 C NE2 HIS 764 C HIS 771 1_555 J MN MN . C MN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 C NE2 HIS 766 C HIS 773 1_555 J MN MN . C MN 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc13 D OD1 ASP 565 D ASP 572 1_555 M MN MN . D MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc14 D NZ LYS 735 D LYS 741 1_555 M MN MN . D MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc15 D NE2 HIS 766 D HIS 773 1_555 M MN MN . D MN 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 4HNT _atom_sites.fract_transf_matrix[1][1] 0.010392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003754 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 1201 2100 ADP ADP . F 3 MN A 1 1202 2002 MN MN . G 4 BTI A 1 1203 2000 BTI BNK . H 4 BTI B 1 1201 2000 BTI BNK . I 3 MN B 1 1202 2002 MN MN . J 3 MN C 1 1201 2002 MN MN . K 5 ATP C 1 1202 2100 ATP ATP . L 4 BTI D 1 1201 2000 BTI BNK . M 3 MN D 1 1202 2002 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 5 39.102 62.911 -18.728 1 115.97 ? PG ATP 1202 C 1 HETATM 2 O O1G ATP . . . K 5 39.172 61.894 -19.851 1 115.18 ? O1G ATP 1202 C 1 HETATM 3 O O2G ATP . . . K 5 40.448 63.475 -18.298 1 115.4 ? O2G ATP 1202 C 1 HETATM 4 O O3G ATP . . . K 5 38.247 62.459 -17.555 1 115.15 ? O3G ATP 1202 C 1 HETATM 5 P PB ATP . . . K 5 36.735 64.12 -19.834 1 113.4 ? PB ATP 1202 C 1 HETATM 6 O O1B ATP . . . K 5 36.566 64.832 -21.168 1 110.33 ? O1B ATP 1202 C 1 HETATM 7 O O2B ATP . . . K 5 35.8 64.478 -18.686 1 106.33 ? O2B ATP 1202 C 1 HETATM 8 O O3B ATP . . . K 5 38.308 64.182 -19.385 1 114.75 ? O3B ATP 1202 C 1 HETATM 9 P PA ATP . . . K 5 35.284 61.789 -20.214 1 107.32 ? PA ATP 1202 C 1 HETATM 10 O O1A ATP . . . K 5 34.402 62.7 -21.045 1 108.57 ? O1A ATP 1202 C 1 HETATM 11 O O2A ATP . . . K 5 35.583 60.373 -20.674 1 105.06 ? O2A ATP 1202 C 1 HETATM 12 O O3A ATP . . . K 5 36.689 62.528 -20.09 1 109.11 ? O3A ATP 1202 C 1 HETATM 13 O O5' ATP . . . K 5 34.773 61.821 -18.684 1 103.28 ? O5' ATP 1202 C 1 HETATM 14 C C5' ATP . . . K 5 35.51 61.059 -17.744 1 104.74 ? C5' ATP 1202 C 1 HETATM 15 C C4' ATP . . . K 5 34.556 60.462 -16.732 1 105.76 ? C4' ATP 1202 C 1 HETATM 16 O O4' ATP . . . K 5 33.213 60.912 -16.932 1 106.4 ? O4' ATP 1202 C 1 HETATM 17 C C3' ATP . . . K 5 34.497 58.943 -16.783 1 102.86 ? C3' ATP 1202 C 1 HETATM 18 O O3' ATP . . . K 5 35.516 58.378 -15.978 1 102 ? O3' ATP 1202 C 1 HETATM 19 C C2' ATP . . . K 5 33.15 58.652 -16.16 1 105.05 ? C2' ATP 1202 C 1 HETATM 20 O O2' ATP . . . K 5 33.232 58.629 -14.722 1 102.4 ? O2' ATP 1202 C 1 HETATM 21 C C1' ATP . . . K 5 32.306 59.825 -16.66 1 107.76 ? C1' ATP 1202 C 1 HETATM 22 N N9 ATP . . . K 5 31.725 59.333 -17.94 1 110.64 ? N9 ATP 1202 C 1 HETATM 23 C C8 ATP . . . K 5 32.065 59.739 -19.184 1 110.53 ? C8 ATP 1202 C 1 HETATM 24 N N7 ATP . . . K 5 31.387 59.036 -20.13 1 110.67 ? N7 ATP 1202 C 1 HETATM 25 C C5 ATP . . . K 5 30.613 58.137 -19.49 1 109.84 ? C5 ATP 1202 C 1 HETATM 26 C C6 ATP . . . K 5 29.646 57.09 -19.881 1 106.92 ? C6 ATP 1202 C 1 HETATM 27 N N6 ATP . . . K 5 29.366 56.843 -21.173 1 106.43 ? N6 ATP 1202 C 1 HETATM 28 N N1 ATP . . . K 5 29.053 56.385 -18.904 1 108.21 ? N1 ATP 1202 C 1 HETATM 29 C C2 ATP . . . K 5 29.341 56.595 -17.606 1 110.2 ? C2 ATP 1202 C 1 HETATM 30 N N3 ATP . . . K 5 30.197 57.533 -17.166 1 109.27 ? N3 ATP 1202 C 1 HETATM 31 C C4 ATP . . . K 5 30.851 58.326 -18.048 1 110.43 ? C4 ATP 1202 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #