data_4HO6
#
_model_server_result.job_id            eLu3NsA8u5q4nJRKNVrGuA 
_model_server_result.datetime_utc      '2024-11-27 23:02:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ho6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4HO6 
#
_exptl.entry_id    4HO6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              484.141 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "URIDINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HO6 
_cell.length_a            91.541 
_cell.length_b            91.541 
_cell.length_c            67.584 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HO6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 2 1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 7_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -67.584 
4 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -67.584 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C9 H15 N2 O15 P3' 
_chem_comp.formula_weight    484.141 
_chem_comp.id                UTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "URIDINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A UTP doub 424 n n 
PA O2A UTP sing 425 n n 
PA O3A UTP sing 426 n n 
PA O5' UTP sing 427 n n 
O2A H2A UTP sing 428 n n 
O3A PB UTP sing 429 n n 
O5' C5' UTP sing 430 n n 
PB O1B UTP sing 431 n n 
PB O2B UTP doub 432 n n 
PB O3B UTP sing 433 n n 
O1B H1B UTP sing 434 n n 
O3B PG UTP sing 435 n n 
PG O1G UTP sing 436 n n 
PG O2G UTP doub 437 n n 
PG O3G UTP sing 438 n n 
O1G H1G UTP sing 439 n n 
O3G H3G UTP sing 440 n n 
C5' C4' UTP sing 441 n n 
C5' "H5'1" UTP sing 442 n n 
C5' "H5'2" UTP sing 443 n n 
C4' O4' UTP sing 444 n n 
C4' C3' UTP sing 445 n n 
C4' H4' UTP sing 446 n n 
O4' C1' UTP sing 447 n n 
C1' C2' UTP sing 448 n n 
C1' N1 UTP sing 449 n n 
C1' H1' UTP sing 450 n n 
C2' O2' UTP sing 451 n n 
C2' C3' UTP sing 452 n n 
C2' H2' UTP sing 453 n n 
O2' HA UTP sing 454 n n 
C3' O3' UTP sing 455 n n 
C3' H3' UTP sing 456 n n 
O3' HB UTP sing 457 n n 
N1 C6 UTP sing 458 n y 
N1 C2 UTP sing 459 n y 
C6 C5 UTP doub 460 n y 
C6 H6 UTP sing 461 n n 
C2 O2 UTP doub 462 n n 
C2 N3 UTP sing 463 n y 
N3 C4 UTP sing 464 n y 
N3 H3 UTP sing 465 n n 
C4 O4 UTP doub 466 n n 
C4 C5 UTP sing 467 n y 
C5 H5 UTP sing 468 n n 
#
_atom_sites.entry_id                     4HO6 
_atom_sites.fract_transf_matrix[1][1]    0.010924 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010924 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UPG A 1 300 300 UPG UPG . 
C 3 UTP A 1 301 301 UTP UTP . 
D 4 SO4 A 1 302 302 SO4 SO4 . 
E 4 SO4 A 1 303 303 SO4 SO4 . 
F 5 HOH A 1 401 1 HOH HOH . 
F 5 HOH A 2 402 2 HOH HOH . 
F 5 HOH A 3 403 3 HOH HOH . 
F 5 HOH A 4 404 4 HOH HOH . 
F 5 HOH A 5 405 5 HOH HOH . 
F 5 HOH A 6 406 6 HOH HOH . 
F 5 HOH A 7 407 7 HOH HOH . 
F 5 HOH A 8 408 8 HOH HOH . 
F 5 HOH A 9 409 9 HOH HOH . 
F 5 HOH A 10 410 10 HOH HOH . 
F 5 HOH A 11 411 11 HOH HOH . 
F 5 HOH A 12 412 12 HOH HOH . 
F 5 HOH A 13 413 13 HOH HOH . 
F 5 HOH A 14 414 14 HOH HOH . 
F 5 HOH A 15 415 15 HOH HOH . 
F 5 HOH A 16 416 16 HOH HOH . 
F 5 HOH A 17 417 17 HOH HOH . 
F 5 HOH A 18 418 18 HOH HOH . 
F 5 HOH A 19 419 19 HOH HOH . 
F 5 HOH A 20 420 20 HOH HOH . 
F 5 HOH A 21 421 21 HOH HOH . 
F 5 HOH A 22 422 22 HOH HOH . 
F 5 HOH A 23 423 23 HOH HOH . 
F 5 HOH A 24 424 24 HOH HOH . 
F 5 HOH A 25 425 25 HOH HOH . 
F 5 HOH A 26 426 26 HOH HOH . 
F 5 HOH A 27 427 27 HOH HOH . 
F 5 HOH A 28 428 28 HOH HOH . 
F 5 HOH A 29 429 29 HOH HOH . 
F 5 HOH A 30 430 30 HOH HOH . 
F 5 HOH A 31 431 31 HOH HOH . 
F 5 HOH A 32 432 32 HOH HOH . 
F 5 HOH A 33 433 33 HOH HOH . 
F 5 HOH A 34 434 34 HOH HOH . 
F 5 HOH A 35 435 35 HOH HOH . 
F 5 HOH A 36 436 36 HOH HOH . 
F 5 HOH A 37 437 37 HOH HOH . 
F 5 HOH A 38 438 38 HOH HOH . 
F 5 HOH A 39 439 39 HOH HOH . 
F 5 HOH A 40 440 40 HOH HOH . 
F 5 HOH A 41 441 41 HOH HOH . 
F 5 HOH A 42 442 42 HOH HOH . 
F 5 HOH A 43 443 43 HOH HOH . 
F 5 HOH A 44 444 44 HOH HOH . 
F 5 HOH A 45 445 45 HOH HOH . 
F 5 HOH A 46 446 46 HOH HOH . 
F 5 HOH A 47 447 47 HOH HOH . 
F 5 HOH A 48 448 48 HOH HOH . 
F 5 HOH A 49 449 49 HOH HOH . 
F 5 HOH A 50 450 50 HOH HOH . 
F 5 HOH A 51 451 51 HOH HOH . 
F 5 HOH A 52 452 52 HOH HOH . 
F 5 HOH A 53 453 53 HOH HOH . 
F 5 HOH A 54 454 54 HOH HOH . 
F 5 HOH A 55 455 55 HOH HOH . 
F 5 HOH A 56 456 56 HOH HOH . 
F 5 HOH A 57 457 57 HOH HOH . 
F 5 HOH A 58 458 58 HOH HOH . 
F 5 HOH A 59 459 59 HOH HOH . 
F 5 HOH A 60 460 60 HOH HOH . 
F 5 HOH A 61 461 61 HOH HOH . 
F 5 HOH A 62 462 62 HOH HOH . 
F 5 HOH A 63 463 63 HOH HOH . 
F 5 HOH A 64 464 64 HOH HOH . 
F 5 HOH A 65 465 65 HOH HOH . 
F 5 HOH A 66 466 66 HOH HOH . 
F 5 HOH A 67 467 67 HOH HOH . 
F 5 HOH A 68 468 68 HOH HOH . 
F 5 HOH A 69 469 69 HOH HOH . 
F 5 HOH A 70 470 70 HOH HOH . 
F 5 HOH A 71 471 71 HOH HOH . 
F 5 HOH A 72 472 72 HOH HOH . 
F 5 HOH A 73 473 73 HOH HOH . 
F 5 HOH A 74 474 74 HOH HOH . 
F 5 HOH A 75 475 75 HOH HOH . 
F 5 HOH A 76 476 76 HOH HOH . 
F 5 HOH A 77 477 77 HOH HOH . 
F 5 HOH A 78 478 78 HOH HOH . 
F 5 HOH A 79 479 79 HOH HOH . 
F 5 HOH A 80 480 80 HOH HOH . 
F 5 HOH A 81 481 81 HOH HOH . 
F 5 HOH A 82 482 82 HOH HOH . 
F 5 HOH A 83 483 83 HOH HOH . 
F 5 HOH A 84 484 84 HOH HOH . 
F 5 HOH A 85 485 85 HOH HOH . 
F 5 HOH A 86 486 86 HOH HOH . 
F 5 HOH A 87 487 87 HOH HOH . 
F 5 HOH A 88 488 88 HOH HOH . 
F 5 HOH A 89 489 89 HOH HOH . 
F 5 HOH A 90 490 90 HOH HOH . 
F 5 HOH A 91 491 91 HOH HOH . 
F 5 HOH A 92 492 92 HOH HOH . 
F 5 HOH A 93 493 93 HOH HOH . 
F 5 HOH A 94 494 94 HOH HOH . 
F 5 HOH A 95 495 95 HOH HOH . 
F 5 HOH A 96 496 96 HOH HOH . 
F 5 HOH A 97 497 97 HOH HOH . 
F 5 HOH A 98 498 98 HOH HOH . 
F 5 HOH A 99 499 99 HOH HOH . 
F 5 HOH A 100 500 100 HOH HOH . 
F 5 HOH A 101 501 101 HOH HOH . 
F 5 HOH A 102 502 102 HOH HOH . 
F 5 HOH A 103 503 103 HOH HOH . 
F 5 HOH A 104 504 104 HOH HOH . 
F 5 HOH A 105 505 105 HOH HOH . 
F 5 HOH A 106 506 106 HOH HOH . 
F 5 HOH A 107 507 107 HOH HOH . 
F 5 HOH A 108 508 108 HOH HOH . 
F 5 HOH A 109 509 109 HOH HOH . 
F 5 HOH A 110 510 110 HOH HOH . 
F 5 HOH A 111 511 111 HOH HOH . 
F 5 HOH A 112 512 112 HOH HOH . 
F 5 HOH A 113 513 113 HOH HOH . 
F 5 HOH A 114 514 114 HOH HOH . 
F 5 HOH A 115 515 115 HOH HOH . 
F 5 HOH A 116 516 116 HOH HOH . 
F 5 HOH A 117 517 117 HOH HOH . 
F 5 HOH A 118 518 118 HOH HOH . 
F 5 HOH A 119 519 119 HOH HOH . 
F 5 HOH A 120 520 120 HOH HOH . 
F 5 HOH A 121 521 121 HOH HOH . 
F 5 HOH A 122 522 122 HOH HOH . 
F 5 HOH A 123 523 123 HOH HOH . 
F 5 HOH A 124 524 124 HOH HOH . 
F 5 HOH A 125 525 125 HOH HOH . 
F 5 HOH A 126 526 126 HOH HOH . 
F 5 HOH A 127 527 127 HOH HOH . 
F 5 HOH A 128 528 128 HOH HOH . 
F 5 HOH A 129 529 129 HOH HOH . 
F 5 HOH A 130 530 130 HOH HOH . 
F 5 HOH A 131 531 131 HOH HOH . 
F 5 HOH A 132 532 132 HOH HOH . 
F 5 HOH A 133 533 133 HOH HOH . 
F 5 HOH A 134 534 134 HOH HOH . 
F 5 HOH A 135 535 135 HOH HOH . 
F 5 HOH A 136 536 136 HOH HOH . 
F 5 HOH A 137 537 137 HOH HOH . 
F 5 HOH A 138 538 138 HOH HOH . 
F 5 HOH A 139 539 139 HOH HOH . 
F 5 HOH A 140 540 140 HOH HOH . 
F 5 HOH A 141 541 141 HOH HOH . 
F 5 HOH A 142 542 142 HOH HOH . 
F 5 HOH A 143 543 143 HOH HOH . 
F 5 HOH A 144 544 144 HOH HOH . 
F 5 HOH A 145 545 145 HOH HOH . 
F 5 HOH A 146 546 146 HOH HOH . 
F 5 HOH A 147 547 147 HOH HOH . 
F 5 HOH A 148 548 148 HOH HOH . 
F 5 HOH A 149 549 149 HOH HOH . 
F 5 HOH A 150 550 150 HOH HOH . 
F 5 HOH A 151 551 151 HOH HOH . 
F 5 HOH A 152 552 152 HOH HOH . 
F 5 HOH A 153 553 153 HOH HOH . 
F 5 HOH A 154 554 154 HOH HOH . 
F 5 HOH A 155 555 155 HOH HOH . 
F 5 HOH A 156 556 156 HOH HOH . 
F 5 HOH A 157 557 157 HOH HOH . 
F 5 HOH A 158 558 158 HOH HOH . 
F 5 HOH A 159 559 159 HOH HOH . 
F 5 HOH A 160 560 160 HOH HOH . 
F 5 HOH A 161 561 161 HOH HOH . 
F 5 HOH A 162 562 162 HOH HOH . 
F 5 HOH A 163 563 163 HOH HOH . 
F 5 HOH A 164 564 164 HOH HOH . 
F 5 HOH A 165 565 165 HOH HOH . 
F 5 HOH A 166 566 166 HOH HOH . 
F 5 HOH A 167 567 167 HOH HOH . 
F 5 HOH A 168 568 168 HOH HOH . 
F 5 HOH A 169 569 169 HOH HOH . 
F 5 HOH A 170 570 170 HOH HOH . 
F 5 HOH A 171 571 171 HOH HOH . 
F 5 HOH A 172 572 172 HOH HOH . 
F 5 HOH A 173 573 173 HOH HOH . 
F 5 HOH A 174 574 174 HOH HOH . 
F 5 HOH A 175 575 175 HOH HOH . 
F 5 HOH A 176 576 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA UTP . . . C 3 20.14 -14.253 -5.971 1 36.34 ? PA UTP 301 A 1 
HETATM 2 O O1A UTP . . . C 3 19.535 -15.62 -6.25 1 32.77 ? O1A UTP 301 A 1 
HETATM 3 O O2A UTP . . . C 3 21.391 -13.851 -6.755 1 40.18 ? O2A UTP 301 A 1 
HETATM 4 O O3A UTP . . . C 3 20.417 -14.102 -4.333 1 39.39 ? O3A UTP 301 A 1 
HETATM 5 O O5' UTP . . . C 3 19.041 -13.11 -6.291 1 30.36 ? O5' UTP 301 A 1 
HETATM 6 P PB UTP . . . C 3 21.018 -12.732 -3.594 1 43.39 ? PB UTP 301 A 1 
HETATM 7 O O1B UTP . . . C 3 20.084 -12.359 -2.443 1 36.09 ? O1B UTP 301 A 1 
HETATM 8 O O2B UTP . . . C 3 21.398 -11.707 -4.658 1 42.39 ? O2B UTP 301 A 1 
HETATM 9 O O3B UTP . . . C 3 22.386 -13.26 -2.869 1 54.56 ? O3B UTP 301 A 1 
HETATM 10 P PG UTP . . . C 3 23.959 -13.006 -3.266 1 67.58 ? PG UTP 301 A 1 
HETATM 11 O O1G UTP . . . C 3 24.307 -14.327 -3.969 1 65.98 ? O1G UTP 301 A 1 
HETATM 12 O O2G UTP . . . C 3 24.005 -11.755 -4.142 1 65.24 ? O2G UTP 301 A 1 
HETATM 13 O O3G UTP . . . C 3 24.659 -12.822 -1.917 1 66.41 ? O3G UTP 301 A 1 
HETATM 14 C C5' UTP . . . C 3 18.035 -12.72 -5.36 1 23.68 ? C5' UTP 301 A 1 
HETATM 15 C C4' UTP . . . C 3 16.885 -12.195 -6.187 1 22.53 ? C4' UTP 301 A 1 
HETATM 16 O O4' UTP . . . C 3 17.367 -11.039 -6.918 1 27.15 ? O4' UTP 301 A 1 
HETATM 17 C C1' UTP . . . C 3 17.004 -11.167 -8.324 1 24.12 ? C1' UTP 301 A 1 
HETATM 18 C C2' UTP . . . C 3 16.932 -12.643 -8.574 1 28.43 ? C2' UTP 301 A 1 
HETATM 19 O O2' UTP . . . C 3 16.031 -12.89 -9.658 1 28.04 ? O2' UTP 301 A 1 
HETATM 20 C C3' UTP . . . C 3 16.438 -13.195 -7.242 1 25.66 ? C3' UTP 301 A 1 
HETATM 21 O O3' UTP . . . C 3 15.034 -13.169 -7.268 1 24.89 ? O3' UTP 301 A 1 
HETATM 22 N N1 UTP . . . C 3 18.035 -10.503 -9.138 1 26.21 ? N1 UTP 301 A 1 
HETATM 23 C C6 UTP . . . C 3 19.337 -10.805 -8.931 1 24.6 ? C6 UTP 301 A 1 
HETATM 24 C C2 UTP . . . C 3 17.66 -9.545 -9.982 1 25.16 ? C2 UTP 301 A 1 
HETATM 25 O O2 UTP . . . C 3 16.429 -9.305 -10.18 1 24.24 ? O2 UTP 301 A 1 
HETATM 26 N N3 UTP . . . C 3 18.592 -8.832 -10.643 1 24.11 ? N3 UTP 301 A 1 
HETATM 27 C C4 UTP . . . C 3 19.915 -9.102 -10.497 1 25.73 ? C4 UTP 301 A 1 
HETATM 28 O O4 UTP . . . C 3 20.815 -8.362 -11.164 1 26.57 ? O4 UTP 301 A 1 
HETATM 29 C C5 UTP . . . C 3 20.328 -10.091 -9.61 1 28.59 ? C5 UTP 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           29 
#