data_4HOG
#
_model_server_result.job_id            zRPt0zZ0IrOdo0A3hZSQOw 
_model_server_result.datetime_utc      '2024-11-24 11:06:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4hog 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4HOG 
#
_exptl.entry_id    4HOG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              358.436 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[3-(2-methoxy-4-phenylphenyl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4HOG 
_cell.length_a            42.828 
_cell.length_b            42.828 
_cell.length_c            229.948 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4HOG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
_chem_comp.formula           'C22 H22 N4 O' 
_chem_comp.formula_weight    358.436 
_chem_comp.id                18H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[3-(2-methoxy-4-phenylphenyl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     5-[(3S)-3-(3-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
NAD C2 18H sing 1 n n 
C2 N1 18H doub 2 n y 
C2 N3 18H sing 3 n y 
N1 C6 18H sing 4 n y 
N3 C4 18H doub 5 n y 
C6 CAB 18H sing 6 n n 
C6 C5 18H doub 7 n y 
C4 C5 18H sing 8 n y 
C4 NAE 18H sing 9 n n 
C5 CAF 18H sing 10 n n 
CAF CAG 18H trip 11 n n 
CAG CBA 18H sing 12 n n 
OAR CAA 18H sing 13 n n 
OAR CAY 18H sing 14 n n 
CBA CAZ 18H sing 15 n n 
CBA CAC 18H sing 16 n n 
CAY CAZ 18H doub 17 n y 
CAY CAO 18H sing 18 n y 
CAZ CAN 18H sing 19 n y 
CAO CAW 18H doub 20 n y 
CAN CAM 18H doub 21 n y 
CAW CAM 18H sing 22 n y 
CAW CAV 18H sing 23 n n 
CAL CAV 18H doub 24 n y 
CAL CAJ 18H sing 25 n y 
CAV CAK 18H sing 26 n y 
CAJ CAH 18H doub 27 n y 
CAK CAI 18H doub 28 n y 
CAH CAI 18H sing 29 n y 
CAB H1 18H sing 30 n n 
CAB H2 18H sing 31 n n 
CAB H3 18H sing 32 n n 
NAD H4 18H sing 33 n n 
NAD H5 18H sing 34 n n 
NAE H6 18H sing 35 n n 
NAE H7 18H sing 36 n n 
CBA H8 18H sing 37 n n 
CAC H9 18H sing 38 n n 
CAC H10 18H sing 39 n n 
CAC H11 18H sing 40 n n 
CAO H12 18H sing 41 n n 
CAA H13 18H sing 42 n n 
CAA H14 18H sing 43 n n 
CAA H15 18H sing 44 n n 
CAN H16 18H sing 45 n n 
CAM H17 18H sing 46 n n 
CAK H18 18H sing 47 n n 
CAI H19 18H sing 48 n n 
CAH H20 18H sing 49 n n 
CAJ H21 18H sing 50 n n 
CAL H22 18H sing 51 n n 
#
_atom_sites.entry_id                     4HOG 
_atom_sites.fract_transf_matrix[1][1]    0.023349 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 301 1 NDP NAP . 
D 3 18H A 1 302 1 18H DRG . 
E 4 CL A 1 303 1 CL CL . 
F 4 CL A 1 304 1 CL CL . 
G 4 CL A 1 305 1 CL CL . 
H 2 NDP B 1 301 1 NDP NAP . 
I 3 18H B 1 302 1 18H DRG . 
J 4 CL B 1 303 1 CL CL . 
K 5 HOH A 1 401 5 HOH HOH . 
K 5 HOH A 2 402 6 HOH HOH . 
K 5 HOH A 3 403 9 HOH HOH . 
K 5 HOH A 4 404 11 HOH HOH . 
K 5 HOH A 5 405 13 HOH HOH . 
K 5 HOH A 6 406 14 HOH HOH . 
K 5 HOH A 7 407 19 HOH HOH . 
K 5 HOH A 8 408 20 HOH HOH . 
K 5 HOH A 9 409 21 HOH HOH . 
K 5 HOH A 10 410 22 HOH HOH . 
K 5 HOH A 11 411 23 HOH HOH . 
K 5 HOH A 12 412 24 HOH HOH . 
K 5 HOH A 13 413 26 HOH HOH . 
K 5 HOH A 14 414 28 HOH HOH . 
K 5 HOH A 15 415 33 HOH HOH . 
K 5 HOH A 16 416 38 HOH HOH . 
K 5 HOH A 17 417 39 HOH HOH . 
K 5 HOH A 18 418 40 HOH HOH . 
K 5 HOH A 19 419 43 HOH HOH . 
K 5 HOH A 20 420 47 HOH HOH . 
K 5 HOH A 21 421 49 HOH HOH . 
K 5 HOH A 22 422 50 HOH HOH . 
K 5 HOH A 23 423 51 HOH HOH . 
K 5 HOH A 24 424 52 HOH HOH . 
K 5 HOH A 25 425 55 HOH HOH . 
K 5 HOH A 26 426 56 HOH HOH . 
K 5 HOH A 27 427 57 HOH HOH . 
K 5 HOH A 28 428 59 HOH HOH . 
K 5 HOH A 29 429 60 HOH HOH . 
K 5 HOH A 30 430 61 HOH HOH . 
K 5 HOH A 31 431 64 HOH HOH . 
K 5 HOH A 32 432 65 HOH HOH . 
K 5 HOH A 33 433 67 HOH HOH . 
K 5 HOH A 34 434 68 HOH HOH . 
K 5 HOH A 35 435 70 HOH HOH . 
K 5 HOH A 36 436 71 HOH HOH . 
K 5 HOH A 37 437 72 HOH HOH . 
K 5 HOH A 38 438 75 HOH HOH . 
K 5 HOH A 39 439 77 HOH HOH . 
K 5 HOH A 40 440 79 HOH HOH . 
K 5 HOH A 41 441 80 HOH HOH . 
K 5 HOH A 42 442 81 HOH HOH . 
K 5 HOH A 43 443 85 HOH HOH . 
K 5 HOH A 44 444 86 HOH HOH . 
K 5 HOH A 45 445 87 HOH HOH . 
K 5 HOH A 46 446 88 HOH HOH . 
K 5 HOH A 47 447 89 HOH HOH . 
K 5 HOH A 48 448 93 HOH HOH . 
K 5 HOH A 49 449 1 HOH HOH . 
K 5 HOH A 50 450 2 HOH HOH . 
K 5 HOH A 51 451 3 HOH HOH . 
K 5 HOH A 52 452 7 HOH HOH . 
K 5 HOH A 53 453 8 HOH HOH . 
K 5 HOH A 54 454 10 HOH HOH . 
K 5 HOH A 55 455 11 HOH HOH . 
K 5 HOH A 56 456 12 HOH HOH . 
K 5 HOH A 57 457 15 HOH HOH . 
K 5 HOH A 58 458 17 HOH HOH . 
K 5 HOH A 59 459 18 HOH HOH . 
K 5 HOH A 60 460 19 HOH HOH . 
K 5 HOH A 61 461 20 HOH HOH . 
K 5 HOH A 62 462 26 HOH HOH . 
K 5 HOH A 63 463 27 HOH HOH . 
K 5 HOH A 64 464 28 HOH HOH . 
K 5 HOH A 65 465 30 HOH HOH . 
K 5 HOH A 66 466 31 HOH HOH . 
K 5 HOH A 67 467 34 HOH HOH . 
K 5 HOH A 68 468 1 HOH HOH . 
K 5 HOH A 69 469 3 HOH HOH . 
K 5 HOH A 70 470 5 HOH HOH . 
K 5 HOH A 71 471 11 HOH HOH . 
K 5 HOH A 72 472 15 HOH HOH . 
K 5 HOH A 73 473 24 HOH HOH . 
K 5 HOH A 74 474 28 HOH HOH . 
K 5 HOH A 75 475 30 HOH HOH . 
K 5 HOH A 76 476 31 HOH HOH . 
K 5 HOH A 77 477 33 HOH HOH . 
K 5 HOH A 78 478 36 HOH HOH . 
K 5 HOH A 79 479 37 HOH HOH . 
K 5 HOH A 80 480 40 HOH HOH . 
K 5 HOH A 81 481 41 HOH HOH . 
K 5 HOH A 82 482 44 HOH HOH . 
K 5 HOH A 83 483 54 HOH HOH . 
K 5 HOH A 84 484 55 HOH HOH . 
K 5 HOH A 85 485 80 HOH HOH . 
K 5 HOH A 86 486 90 HOH HOH . 
L 5 HOH B 1 401 7 HOH HOH . 
L 5 HOH B 2 402 8 HOH HOH . 
L 5 HOH B 3 403 10 HOH HOH . 
L 5 HOH B 4 404 12 HOH HOH . 
L 5 HOH B 5 405 15 HOH HOH . 
L 5 HOH B 6 406 16 HOH HOH . 
L 5 HOH B 7 407 17 HOH HOH . 
L 5 HOH B 8 408 18 HOH HOH . 
L 5 HOH B 9 409 25 HOH HOH . 
L 5 HOH B 10 410 27 HOH HOH . 
L 5 HOH B 11 411 29 HOH HOH . 
L 5 HOH B 12 412 30 HOH HOH . 
L 5 HOH B 13 413 31 HOH HOH . 
L 5 HOH B 14 414 32 HOH HOH . 
L 5 HOH B 15 415 34 HOH HOH . 
L 5 HOH B 16 416 35 HOH HOH . 
L 5 HOH B 17 417 36 HOH HOH . 
L 5 HOH B 18 418 37 HOH HOH . 
L 5 HOH B 19 419 41 HOH HOH . 
L 5 HOH B 20 420 42 HOH HOH . 
L 5 HOH B 21 421 44 HOH HOH . 
L 5 HOH B 22 422 45 HOH HOH . 
L 5 HOH B 23 423 46 HOH HOH . 
L 5 HOH B 24 424 48 HOH HOH . 
L 5 HOH B 25 425 53 HOH HOH . 
L 5 HOH B 26 426 54 HOH HOH . 
L 5 HOH B 27 427 58 HOH HOH . 
L 5 HOH B 28 428 62 HOH HOH . 
L 5 HOH B 29 429 63 HOH HOH . 
L 5 HOH B 30 430 66 HOH HOH . 
L 5 HOH B 31 431 69 HOH HOH . 
L 5 HOH B 32 432 73 HOH HOH . 
L 5 HOH B 33 433 74 HOH HOH . 
L 5 HOH B 34 434 76 HOH HOH . 
L 5 HOH B 35 435 78 HOH HOH . 
L 5 HOH B 36 436 82 HOH HOH . 
L 5 HOH B 37 437 83 HOH HOH . 
L 5 HOH B 38 438 84 HOH HOH . 
L 5 HOH B 39 439 94 HOH HOH . 
L 5 HOH B 40 440 4 HOH HOH . 
L 5 HOH B 41 441 5 HOH HOH . 
L 5 HOH B 42 442 6 HOH HOH . 
L 5 HOH B 43 443 9 HOH HOH . 
L 5 HOH B 44 444 13 HOH HOH . 
L 5 HOH B 45 445 14 HOH HOH . 
L 5 HOH B 46 446 16 HOH HOH . 
L 5 HOH B 47 447 21 HOH HOH . 
L 5 HOH B 48 448 22 HOH HOH . 
L 5 HOH B 49 449 23 HOH HOH . 
L 5 HOH B 50 450 24 HOH HOH . 
L 5 HOH B 51 451 25 HOH HOH . 
L 5 HOH B 52 452 29 HOH HOH . 
L 5 HOH B 53 453 32 HOH HOH . 
L 5 HOH B 54 454 33 HOH HOH . 
L 5 HOH B 55 455 35 HOH HOH . 
L 5 HOH B 56 456 2 HOH HOH . 
L 5 HOH B 57 457 6 HOH HOH . 
L 5 HOH B 58 458 7 HOH HOH . 
L 5 HOH B 59 459 8 HOH HOH . 
L 5 HOH B 60 460 9 HOH HOH . 
L 5 HOH B 61 461 10 HOH HOH . 
L 5 HOH B 62 462 12 HOH HOH . 
L 5 HOH B 63 463 13 HOH HOH . 
L 5 HOH B 64 464 14 HOH HOH . 
L 5 HOH B 65 465 16 HOH HOH . 
L 5 HOH B 66 466 17 HOH HOH . 
L 5 HOH B 67 467 18 HOH HOH . 
L 5 HOH B 68 468 19 HOH HOH . 
L 5 HOH B 69 469 22 HOH HOH . 
L 5 HOH B 70 470 23 HOH HOH . 
L 5 HOH B 71 471 27 HOH HOH . 
L 5 HOH B 72 472 42 HOH HOH . 
L 5 HOH B 73 473 45 HOH HOH . 
L 5 HOH B 74 474 46 HOH HOH . 
L 5 HOH B 75 475 47 HOH HOH . 
L 5 HOH B 76 476 48 HOH HOH . 
L 5 HOH B 77 477 56 HOH HOH . 
L 5 HOH B 78 478 58 HOH HOH . 
L 5 HOH B 79 479 64 HOH HOH . 
L 5 HOH B 80 480 65 HOH HOH . 
L 5 HOH B 81 481 86 HOH HOH . 
L 5 HOH B 82 482 87 HOH HOH . 
L 5 HOH B 83 483 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB 18H . . . D 3 8.736 -14.558 5.926 1 13.37 ? CAB 18H 302 A 1 
HETATM 2 C C6 18H . . . D 3 9.169 -15.178 4.732 1 13.07 ? C6 18H 302 A 1 
HETATM 3 N N1 18H . . . D 3 10.272 -15.937 4.758 1 12.53 ? N1 18H 302 A 1 
HETATM 4 C C2 18H . . . D 3 10.741 -16.552 3.654 1 12.25 ? C2 18H 302 A 1 
HETATM 5 N NAD 18H . . . D 3 11.864 -17.275 3.713 1 11.97 ? NAD 18H 302 A 1 
HETATM 6 N N3 18H . . . D 3 10.106 -16.425 2.491 1 12.35 ? N3 18H 302 A 1 
HETATM 7 C C4 18H . . . D 3 8.988 -15.69 2.383 1 12.79 ? C4 18H 302 A 1 
HETATM 8 N NAE 18H . . . D 3 8.346 -15.57 1.222 1 12.06 ? NAE 18H 302 A 1 
HETATM 9 C C5 18H . . . D 3 8.476 -15.031 3.522 1 13.31 ? C5 18H 302 A 1 
HETATM 10 C CAF 18H . . . D 3 7.311 -14.233 3.529 1 14.08 ? CAF 18H 302 A 1 
HETATM 11 C CAG 18H . . . D 3 6.366 -13.565 3.559 1 15.85 ? CAG 18H 302 A 1 
HETATM 12 C CBA 18H . . . D 3 5.152 -12.732 3.615 1 17.36 ? CBA 18H 302 A 1 
HETATM 13 C CAC 18H . . . D 3 4.844 -12.205 2.222 1 16.97 ? CAC 18H 302 A 1 
HETATM 14 C CAZ 18H . . . D 3 5.298 -11.692 4.57 1 18.84 ? CAZ 18H 302 A 1 
HETATM 15 C CAY 18H . . . D 3 4.469 -11.612 5.7 1 20.32 ? CAY 18H 302 A 1 
HETATM 16 C CAO 18H . . . D 3 4.613 -10.57 6.629 1 20.65 ? CAO 18H 302 A 1 
HETATM 17 O OAR 18H . . . D 3 3.521 -12.583 5.846 1 20.5 ? OAR 18H 302 A 1 
HETATM 18 C CAA 18H . . . D 3 2.458 -12.233 6.756 1 21.64 ? CAA 18H 302 A 1 
HETATM 19 C CAN 18H . . . D 3 6.268 -10.697 4.411 1 19.76 ? CAN 18H 302 A 1 
HETATM 20 C CAM 18H . . . D 3 6.416 -9.665 5.328 1 20.65 ? CAM 18H 302 A 1 
HETATM 21 C CAW 18H . . . D 3 5.582 -9.586 6.448 1 21.94 ? CAW 18H 302 A 1 
HETATM 22 C CAV 18H . . . D 3 5.757 -8.57 7.404 1 24.14 ? CAV 18H 302 A 1 
HETATM 23 C CAK 18H . . . D 3 6.57 -7.457 7.146 1 26.18 ? CAK 18H 302 A 1 
HETATM 24 C CAI 18H . . . D 3 6.768 -6.478 8.134 1 26.65 ? CAI 18H 302 A 1 
HETATM 25 C CAH 18H . . . D 3 6.163 -6.612 9.392 1 26.7 ? CAH 18H 302 A 1 
HETATM 26 C CAJ 18H . . . D 3 5.37 -7.724 9.673 1 26.52 ? CAJ 18H 302 A 1 
HETATM 27 C CAL 18H . . . D 3 5.177 -8.699 8.683 1 25.89 ? CAL 18H 302 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#