data_4HP2 # _model_server_result.job_id '_S8HyFDjFY1WKY2L7muBOQ' _model_server_result.datetime_utc '2025-01-25 07:31:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hp2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":103}' # _entry.id 4HP2 # _exptl.entry_id 4HP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 73.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIMETHYLFORMAMIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.45 _cell.angle_gamma 90 _cell.entry_id 4HP2 _cell.length_a 21.394 _cell.length_b 22.87 _cell.length_c 22.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C11 QUA 1 A QUA 1 1_555 A OG1 THR 13 A THR 13 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.359 ? covale ? covale2 A C11 QUA 1 A QUA 1 1_555 A OG1 THR 13 A THR 13 1_555 ? ? ? ? D ? ? ? ? ? ? ? 1.305 ? covale ? covale3 B C11 QUA 1 B QUA 1 1_555 B OG1 THR 13 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 A C7 QUA 1 A QUA 1 1_555 A N ILE 2 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale5 B C7 QUA 1 B QUA 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale6 A C ALA 3 A ALA 3 1_555 A N DHA 4 A DHA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale7 A C DHA 4 A DHA 4 1_555 A N ALA 5 A ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale8 A C SER 6 A SER 6 1_555 A N BB9 7 A BB9 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale9 A C BB9 7 A BB9 7 1_555 A N THR 8 A THR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale10 A C THR 8 A THR 8 1_555 A N DBU 9 A DBU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale11 A C DBU 9 A DBU 9 1_555 A N DCY 10 A DCY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? covale ? covale12 A C DCY 10 A DCY 10 1_555 A N TS9 11 A TS9 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale13 A C TS9 11 A TS9 11 1_555 A N BB9 12 A BB9 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale14 A C BB9 12 A BB9 12 1_555 A N THR 13 A THR 13 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.337 ? covale ? covale15 A C BB9 12 A BB9 12 1_555 A N THR 13 A THR 13 1_555 ? ? ? ? D ? ? ? ? ? ? ? 1.424 ? covale ? covale16 A C THR 13 A THR 13 1_555 A N BB9 14 A BB9 14 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.298 ? covale ? covale17 A C THR 13 A THR 13 1_555 A N BB9 14 A BB9 14 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.317 ? covale ? covale18 A C BB9 14 A BB9 14 1_555 A N MH6 15 A MH6 15 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.483 ? covale ? covale19 A C BB9 14 A BB9 14 1_555 A N MH6 15 A MH6 15 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.462 ? covale ? covale20 A C MH6 15 A MH6 15 1_555 A N BB9 16 A BB9 16 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.312 ? covale ? covale21 A C MH6 15 A MH6 15 1_555 A N BB9 16 A BB9 16 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.318 ? covale ? covale22 A C BB9 16 A BB9 16 1_555 A N DHA 17 A DHA 17 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.333 ? covale ? covale23 A C BB9 16 A BB9 16 1_555 A N DHA 17 A DHA 17 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.515 ? covale ? covale24 A C DHA 17 A DHA 17 1_555 A N DHA 18 A DHA 18 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.328 ? covale ? covale25 A C DHA 17 A DHA 17 1_555 A N DHA 18 A DHA 18 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.343 ? covale ? covale26 A C DHA 18 A DHA 18 1_555 A N NH2 19 A NH2 19 1_555 ? C ? ? C ? ? ? ? ? ? ? 1.273 ? covale ? covale27 A C DHA 18 A DHA 18 1_555 A N NH2 19 A NH2 19 1_555 ? D ? ? D ? ? ? ? ? ? ? 1.379 ? covale ? covale28 B C ALA 3 B ALA 3 1_555 B N DHA 4 B DHA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale29 B C DHA 4 B DHA 4 1_555 B N ALA 5 B ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale30 B C SER 6 B SER 6 1_555 B N BB9 7 B BB9 7 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.303 ? covale ? covale31 B C SER 6 B SER 6 1_555 B N BB9 7 B BB9 7 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.312 ? covale ? covale32 B C BB9 7 B BB9 7 1_555 B N THR 8 B THR 8 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale33 B C BB9 7 B BB9 7 1_555 B N THR 8 B THR 8 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale34 B C THR 8 B THR 8 1_555 B N DBU 9 B DBU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale35 B C DBU 9 B DBU 9 1_555 B N DCY 10 B DCY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.276 ? covale ? covale36 B C DCY 10 B DCY 10 1_555 B N TS9 11 B TS9 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale37 B C TS9 11 B TS9 11 1_555 B N BB9 12 B BB9 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale38 B C BB9 12 B BB9 12 1_555 B N THR 13 B THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale39 B C THR 13 B THR 13 1_555 B N BB9 14 B BB9 14 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.281 ? covale ? covale40 B C THR 13 B THR 13 1_555 B N BB9 14 B BB9 14 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.407 ? covale ? covale41 B C BB9 14 B BB9 14 1_555 B N MH6 15 B MH6 15 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.475 ? covale ? covale42 B C BB9 14 B BB9 14 1_555 B N MH6 15 B MH6 15 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.503 ? covale ? covale43 B C MH6 15 B MH6 15 1_555 B N BB9 16 B BB9 16 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.292 ? covale ? covale44 B C MH6 15 B MH6 15 1_555 B N BB9 16 B BB9 16 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.284 ? covale ? covale45 B C BB9 16 B BB9 16 1_555 B N DHA 17 B DHA 17 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.356 ? covale ? covale46 B C BB9 16 B BB9 16 1_555 B N DHA 17 B DHA 17 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.316 ? covale ? covale47 B C DHA 17 B DHA 17 1_555 B N DHA 18 B DHA 18 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.352 ? covale ? covale48 B C DHA 17 B DHA 17 1_555 B N DHA 18 B DHA 18 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.359 ? covale ? covale49 B C DHA 18 B DHA 18 1_555 B N NH2 19 B NH2 19 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.312 ? covale ? covale50 B C DHA 18 B DHA 18 1_555 B N NH2 19 B NH2 19 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.283 ? # _chem_comp.formula 'C3 H7 N O' _chem_comp.formula_weight 73.094 _chem_comp.id DMF _chem_comp.mon_nstd_flag . _chem_comp.name DIMETHYLFORMAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HP2 _atom_sites.fract_transf_matrix[1][1] 0.046742 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013801 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.043725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.045772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMF A 1 101 42 DMF DMF . D 2 DMF A 1 102 49 DMF DMF . E 3 ETZ A 1 103 51 ETZ ETO . F 3 ETZ A 1 104 52 ETZ ETO . G 3 ETZ A 1 105 53 ETZ ETO . H 3 ETZ A 1 106 54 ETZ ETO . I 3 ETZ A 1 107 55 ETZ ETO . J 2 DMF A 1 108 45 DMF DMF . K 2 DMF B 1 101 40 DMF DMF . L 2 DMF B 1 102 41 DMF DMF . M 2 DMF B 1 103 43 DMF DMF . N 2 DMF B 1 104 44 DMF DMF . O 2 DMF B 1 105 47 DMF DMF . P 3 ETZ B 1 106 50 ETZ ETO . Q 4 HOH A 1 201 60 HOH HOH . Q 4 HOH A 2 202 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMF . I . M 2 7.265 13.06 11.667 0.45 67.95 ? C1 DMF 103 B 1 HETATM 2 C C1 DMF . J . M 2 6.081 13.543 13.967 0.55 15.5 ? C1 DMF 103 B 1 HETATM 3 C C2 DMF . I . M 2 5.912 12.985 13.679 0.45 47.21 ? C2 DMF 103 B 1 HETATM 4 C C2 DMF . J . M 2 8.258 13.436 15.183 0.55 13.72 ? C2 DMF 103 B 1 HETATM 5 C C DMF . I . M 2 8.287 12.365 13.744 0.45 10.9 ? C DMF 103 B 1 HETATM 6 C C DMF . J . M 2 7.934 12.215 13.095 0.55 21.02 ? C DMF 103 B 1 HETATM 7 O O DMF . I . M 2 9.338 12.076 13.18 0.45 9.34 ? O DMF 103 B 1 HETATM 8 O O DMF . J . M 2 9.05 11.727 13.122 0.55 15.38 ? O DMF 103 B 1 HETATM 9 N N DMF . I . M 2 7.189 12.814 13.086 0.45 9.19 ? N DMF 103 B 1 HETATM 10 N N DMF . J . M 2 7.42 13.031 14.056 0.55 13.5 ? N DMF 103 B 1 HETATM 11 H H11 DMF . I . M 2 6.381 12.631 11.18 0.45 22.4 ? H11 DMF 103 B 1 HETATM 12 H H11 DMF . J . M 2 5.436 12.797 13.484 0.55 10.77 ? H11 DMF 103 B 1 HETATM 13 H H12 DMF . I . M 2 8.173 12.594 11.263 0.45 22.4 ? H12 DMF 103 B 1 HETATM 14 H H12 DMF . J . M 2 6.084 14.468 13.377 0.55 10.77 ? H12 DMF 103 B 1 HETATM 15 H H13 DMF . I . M 2 7.297 14.142 11.485 0.45 22.4 ? H13 DMF 103 B 1 HETATM 16 H H13 DMF . J . M 2 5.696 13.755 14.972 0.55 10.77 ? H13 DMF 103 B 1 HETATM 17 H H21 DMF . I . M 2 5.583 12.035 14.118 0.45 21.95 ? H21 DMF 103 B 1 HETATM 18 H H21 DMF . J . M 2 9.286 13.605 14.837 0.55 11.76 ? H21 DMF 103 B 1 HETATM 19 H H22 DMF . I . M 2 5.972 13.753 14.46 0.45 21.95 ? H22 DMF 103 B 1 HETATM 20 H H22 DMF . J . M 2 8.252 12.641 15.94 0.55 11.76 ? H22 DMF 103 B 1 HETATM 21 H H23 DMF . I . M 2 5.19 13.303 12.916 0.45 21.95 ? H23 DMF 103 B 1 HETATM 22 H H23 DMF . J . M 2 7.861 14.362 15.617 0.55 11.76 ? H23 DMF 103 B 1 HETATM 23 H HC DMF . I . M 2 8.229 12.254 14.841 0.45 10.24 ? HC DMF 103 B 1 HETATM 24 H HC DMF . J . M 2 7.291 11.98 12.228 0.55 15.49 ? HC DMF 103 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #