data_4HP7 # _model_server_result.job_id OzZ80g4xx5Tn66MhYyhWAw _model_server_result.datetime_utc '2024-11-22 13:33:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":108}' # _entry.id 4HP7 # _exptl.entry_id 4HP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.32 _cell.angle_gamma 90 _cell.entry_id 4HP7 _cell.length_a 24.086 _cell.length_b 9.826 _cell.length_c 35.093 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C17 18Y . A 18Y 101 1_555 B N7 GUN . A GUN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale2 C C17 18Y . B 18Y 101 1_555 D N7 GUN . B GUN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 E C17 18Y . C 18Y 101 1_555 F N7 GUN . C GUN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale4 G C17 18Y . D 18Y 101 1_555 H N7 GUN . D GUN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 94 n n S C1 DMS sing 95 n n S C2 DMS sing 96 n n C1 H11 DMS sing 97 n n C1 H12 DMS sing 98 n n C1 H13 DMS sing 99 n n C2 H21 DMS sing 100 n n C2 H22 DMS sing 101 n n C2 H23 DMS sing 102 n n # _atom_sites.entry_id 4HP7 _atom_sites.fract_transf_matrix[1][1] 0.041517 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001678 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.101771 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code A 1 18Y A 1 101 102 18Y 18Y . B 2 GUN A 1 102 101 GUN GUN . C 1 18Y B 1 101 103 18Y 18Y . D 2 GUN B 1 102 101 GUN GUN . E 1 18Y C 1 101 104 18Y 18Y . F 2 GUN C 1 102 101 GUN GUN . G 1 18Y D 1 101 105 18Y 18Y . H 2 GUN D 1 102 101 GUN GUN . I 3 DMS C 1 106 106 DMS DMS . J 3 DMS C 1 107 107 DMS DMS . K 3 DMS D 1 108 108 DMS DMS . L 4 HOH D 1 201 201 HOH HOH . L 4 HOH D 2 202 202 HOH HOH . L 4 HOH D 3 203 203 HOH HOH . L 4 HOH D 4 204 204 HOH HOH . L 4 HOH D 5 205 205 HOH HOH . L 4 HOH D 6 206 206 HOH HOH . L 4 HOH D 7 207 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS 108 A . K 3 -1.651 11.774 -3.758 0.39 17.53 ? S DMS 108 D 1 HETATM 2 S S DMS 108 B . K 3 -0.737 10.412 -4.118 0.61 17.53 ? S DMS 108 D 1 HETATM 3 O O DMS 108 A . K 3 -1.96 11.565 -5.255 0.39 19.64 ? O DMS 108 D 1 HETATM 4 O O DMS 108 B . K 3 -1.382 11.295 -5.235 0.61 19.64 ? O DMS 108 D 1 HETATM 5 C C1 DMS 108 A . K 3 0.137 11.976 -3.847 0.39 15.07 ? C1 DMS 108 D 1 HETATM 6 C C1 DMS 108 B . K 3 0.463 11.566 -3.407 0.61 15.07 ? C1 DMS 108 D 1 HETATM 7 C C2 DMS 108 A . K 3 -1.662 10.059 -3.182 0.39 15.73 ? C2 DMS 108 D 1 HETATM 8 C C2 DMS 108 B . K 3 -1.921 10.726 -2.776 0.61 15.73 ? C2 DMS 108 D 1 HETATM 9 H H11 DMS 108 A . K 3 0.571 11.288 -3.301 0.39 22.6 ? H11 DMS 108 D 1 HETATM 10 H H11 DMS 108 B . K 3 1.248 11.07 -3.093 0.61 22.6 ? H11 DMS 108 D 1 HETATM 11 H H12 DMS 108 A . K 3 0.383 12.863 -3.51 0.39 22.6 ? H12 DMS 108 D 1 HETATM 12 H H12 DMS 108 B . K 3 0.054 12.041 -2.654 0.61 22.6 ? H12 DMS 108 D 1 HETATM 13 H H13 DMS 108 A . K 3 0.43 11.887 -4.778 0.39 22.6 ? H13 DMS 108 D 1 HETATM 14 H H13 DMS 108 B . K 3 0.738 12.213 -4.09 0.61 22.6 ? H13 DMS 108 D 1 HETATM 15 H H21 DMS 108 A . K 3 -1.403 10.03 -2.237 0.39 23.6 ? H21 DMS 108 D 1 HETATM 16 H H21 DMS 108 B . K 3 -2.144 9.881 -2.333 0.61 23.6 ? H21 DMS 108 D 1 HETATM 17 H H22 DMS 108 A . K 3 -1.027 9.532 -3.711 0.39 23.6 ? H22 DMS 108 D 1 HETATM 18 H H22 DMS 108 B . K 3 -2.735 11.126 -3.146 0.61 23.6 ? H22 DMS 108 D 1 HETATM 19 H H23 DMS 108 A . K 3 -2.562 9.685 -3.285 0.39 23.6 ? H23 DMS 108 D 1 HETATM 20 H H23 DMS 108 B . K 3 -1.521 11.341 -2.125 0.61 23.6 ? H23 DMS 108 D 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #