data_4HPG # _model_server_result.job_id 6YCeNjFXWFLkhuV5aOiUCQ _model_server_result.datetime_utc '2024-12-21 11:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 4HPG # _exptl.entry_id 4HPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.59 _cell.angle_gamma 90 _cell.entry_id 4HPG _cell.length_a 87.176 _cell.length_b 89.778 _cell.length_c 101.542 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,E,K 1 1 C,F,H,I,L 2 1 A,G,J 3 1 D,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG B 317 NAG 2 n E FUC 2 E 2 FUC B 318 FUC 2 n F NAG 1 F 1 NAG C 317 NAG 2 n F FUC 2 F 2 FUC C 318 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N VAL 2 A VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 B C PCA 1 B PCA 1 1_555 B N VAL 2 B VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B ND2 ASN 27 B ASN 27 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 C C PCA 1 C PCA 1 1_555 C N VAL 2 C VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C ND2 ASN 27 C ASN 27 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 C ND2 ASN 314 C ASN 314 1_555 H C1 NAG . C NAG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale7 D C PCA 1 D PCA 1 1_555 D N VAL 2 D VAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 E O3 NAG . E NAG 1 1_555 E C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale9 F O3 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 306 n n C1 C2 PEG sing 307 n n C1 H11 PEG sing 308 n n C1 H12 PEG sing 309 n n O1 HO1 PEG sing 310 n n C2 O2 PEG sing 311 n n C2 H21 PEG sing 312 n n C2 H22 PEG sing 313 n n O2 C3 PEG sing 314 n n C3 C4 PEG sing 315 n n C3 H31 PEG sing 316 n n C3 H32 PEG sing 317 n n C4 O4 PEG sing 318 n n C4 H41 PEG sing 319 n n C4 H42 PEG sing 320 n n O4 HO4 PEG sing 321 n n # _atom_sites.entry_id 4HPG _atom_sites.fract_transf_matrix[1][1] 0.011471 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010746 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 PEG A 1 401 317 PEG PEG . H 4 NAG C 1 403 319 NAG NAG . I 3 PEG C 1 404 320 PEG PEG . J 5 HOH A 1 501 318 HOH HOH . J 5 HOH A 2 502 319 HOH HOH . J 5 HOH A 3 503 320 HOH HOH . J 5 HOH A 4 504 321 HOH HOH . J 5 HOH A 5 505 322 HOH HOH . J 5 HOH A 6 506 323 HOH HOH . J 5 HOH A 7 507 324 HOH HOH . J 5 HOH A 8 508 325 HOH HOH . J 5 HOH A 9 509 326 HOH HOH . J 5 HOH A 10 510 327 HOH HOH . J 5 HOH A 11 511 328 HOH HOH . J 5 HOH A 12 512 329 HOH HOH . J 5 HOH A 13 513 330 HOH HOH . J 5 HOH A 14 514 331 HOH HOH . J 5 HOH A 15 515 332 HOH HOH . J 5 HOH A 16 516 333 HOH HOH . J 5 HOH A 17 517 334 HOH HOH . J 5 HOH A 18 518 335 HOH HOH . J 5 HOH A 19 519 336 HOH HOH . J 5 HOH A 20 520 337 HOH HOH . J 5 HOH A 21 521 338 HOH HOH . J 5 HOH A 22 522 339 HOH HOH . J 5 HOH A 23 523 340 HOH HOH . J 5 HOH A 24 524 341 HOH HOH . J 5 HOH A 25 525 342 HOH HOH . J 5 HOH A 26 526 343 HOH HOH . J 5 HOH A 27 527 344 HOH HOH . J 5 HOH A 28 528 345 HOH HOH . J 5 HOH A 29 529 346 HOH HOH . J 5 HOH A 30 530 347 HOH HOH . J 5 HOH A 31 531 348 HOH HOH . J 5 HOH A 32 532 349 HOH HOH . J 5 HOH A 33 533 350 HOH HOH . J 5 HOH A 34 534 351 HOH HOH . J 5 HOH A 35 535 352 HOH HOH . J 5 HOH A 36 536 353 HOH HOH . J 5 HOH A 37 537 354 HOH HOH . J 5 HOH A 38 538 355 HOH HOH . J 5 HOH A 39 539 356 HOH HOH . J 5 HOH A 40 540 357 HOH HOH . J 5 HOH A 41 541 358 HOH HOH . J 5 HOH A 42 542 359 HOH HOH . J 5 HOH A 43 543 360 HOH HOH . J 5 HOH A 44 544 361 HOH HOH . J 5 HOH A 45 545 362 HOH HOH . J 5 HOH A 46 546 363 HOH HOH . J 5 HOH A 47 547 364 HOH HOH . J 5 HOH A 48 548 365 HOH HOH . J 5 HOH A 49 549 366 HOH HOH . J 5 HOH A 50 550 367 HOH HOH . J 5 HOH A 51 551 368 HOH HOH . J 5 HOH A 52 552 369 HOH HOH . J 5 HOH A 53 553 370 HOH HOH . J 5 HOH A 54 554 371 HOH HOH . J 5 HOH A 55 555 372 HOH HOH . J 5 HOH A 56 556 373 HOH HOH . J 5 HOH A 57 557 374 HOH HOH . J 5 HOH A 58 558 375 HOH HOH . J 5 HOH A 59 559 376 HOH HOH . J 5 HOH A 60 560 377 HOH HOH . K 5 HOH B 1 501 319 HOH HOH . K 5 HOH B 2 502 320 HOH HOH . K 5 HOH B 3 503 321 HOH HOH . K 5 HOH B 4 504 322 HOH HOH . K 5 HOH B 5 505 323 HOH HOH . K 5 HOH B 6 506 324 HOH HOH . K 5 HOH B 7 507 325 HOH HOH . K 5 HOH B 8 508 326 HOH HOH . K 5 HOH B 9 509 327 HOH HOH . K 5 HOH B 10 510 328 HOH HOH . K 5 HOH B 11 511 329 HOH HOH . K 5 HOH B 12 512 330 HOH HOH . K 5 HOH B 13 513 331 HOH HOH . K 5 HOH B 14 514 332 HOH HOH . K 5 HOH B 15 515 333 HOH HOH . K 5 HOH B 16 516 334 HOH HOH . K 5 HOH B 17 517 335 HOH HOH . K 5 HOH B 18 518 336 HOH HOH . K 5 HOH B 19 519 337 HOH HOH . K 5 HOH B 20 520 338 HOH HOH . K 5 HOH B 21 521 339 HOH HOH . K 5 HOH B 22 522 340 HOH HOH . K 5 HOH B 23 523 341 HOH HOH . K 5 HOH B 24 524 342 HOH HOH . K 5 HOH B 25 525 343 HOH HOH . K 5 HOH B 26 526 344 HOH HOH . K 5 HOH B 27 527 345 HOH HOH . K 5 HOH B 28 528 346 HOH HOH . K 5 HOH B 29 529 347 HOH HOH . K 5 HOH B 30 530 348 HOH HOH . K 5 HOH B 31 531 349 HOH HOH . K 5 HOH B 32 532 350 HOH HOH . K 5 HOH B 33 533 351 HOH HOH . K 5 HOH B 34 534 352 HOH HOH . K 5 HOH B 35 535 353 HOH HOH . K 5 HOH B 36 536 354 HOH HOH . K 5 HOH B 37 537 355 HOH HOH . K 5 HOH B 38 538 356 HOH HOH . K 5 HOH B 39 539 357 HOH HOH . K 5 HOH B 40 540 358 HOH HOH . K 5 HOH B 41 541 359 HOH HOH . K 5 HOH B 42 542 360 HOH HOH . K 5 HOH B 43 543 361 HOH HOH . K 5 HOH B 44 544 362 HOH HOH . K 5 HOH B 45 545 363 HOH HOH . K 5 HOH B 46 546 364 HOH HOH . K 5 HOH B 47 547 365 HOH HOH . K 5 HOH B 48 548 366 HOH HOH . K 5 HOH B 49 549 367 HOH HOH . K 5 HOH B 50 550 368 HOH HOH . K 5 HOH B 51 551 369 HOH HOH . L 5 HOH C 1 501 321 HOH HOH . L 5 HOH C 2 502 322 HOH HOH . L 5 HOH C 3 503 324 HOH HOH . L 5 HOH C 4 504 325 HOH HOH . L 5 HOH C 5 505 326 HOH HOH . L 5 HOH C 6 506 327 HOH HOH . L 5 HOH C 7 507 328 HOH HOH . L 5 HOH C 8 508 329 HOH HOH . L 5 HOH C 9 509 330 HOH HOH . L 5 HOH C 10 510 331 HOH HOH . L 5 HOH C 11 511 332 HOH HOH . L 5 HOH C 12 512 333 HOH HOH . L 5 HOH C 13 513 334 HOH HOH . L 5 HOH C 14 514 335 HOH HOH . L 5 HOH C 15 515 336 HOH HOH . L 5 HOH C 16 516 337 HOH HOH . L 5 HOH C 17 517 338 HOH HOH . L 5 HOH C 18 518 339 HOH HOH . L 5 HOH C 19 519 340 HOH HOH . L 5 HOH C 20 520 341 HOH HOH . L 5 HOH C 21 521 342 HOH HOH . L 5 HOH C 22 522 343 HOH HOH . L 5 HOH C 23 523 344 HOH HOH . L 5 HOH C 24 524 345 HOH HOH . L 5 HOH C 25 525 346 HOH HOH . L 5 HOH C 26 526 347 HOH HOH . L 5 HOH C 27 527 348 HOH HOH . L 5 HOH C 28 528 349 HOH HOH . L 5 HOH C 29 529 350 HOH HOH . L 5 HOH C 30 530 351 HOH HOH . L 5 HOH C 31 531 352 HOH HOH . L 5 HOH C 32 532 353 HOH HOH . L 5 HOH C 33 533 354 HOH HOH . L 5 HOH C 34 534 355 HOH HOH . L 5 HOH C 35 535 356 HOH HOH . L 5 HOH C 36 536 357 HOH HOH . L 5 HOH C 37 537 358 HOH HOH . L 5 HOH C 38 538 359 HOH HOH . L 5 HOH C 39 539 360 HOH HOH . L 5 HOH C 40 540 362 HOH HOH . L 5 HOH C 41 541 363 HOH HOH . L 5 HOH C 42 542 364 HOH HOH . L 5 HOH C 43 543 365 HOH HOH . L 5 HOH C 44 544 366 HOH HOH . L 5 HOH C 45 545 367 HOH HOH . M 5 HOH D 1 401 317 HOH HOH . M 5 HOH D 2 402 318 HOH HOH . M 5 HOH D 3 403 319 HOH HOH . M 5 HOH D 4 404 320 HOH HOH . M 5 HOH D 5 405 321 HOH HOH . M 5 HOH D 6 406 322 HOH HOH . M 5 HOH D 7 407 323 HOH HOH . M 5 HOH D 8 408 324 HOH HOH . M 5 HOH D 9 409 325 HOH HOH . M 5 HOH D 10 410 326 HOH HOH . M 5 HOH D 11 411 327 HOH HOH . M 5 HOH D 12 412 328 HOH HOH . M 5 HOH D 13 413 329 HOH HOH . M 5 HOH D 14 414 330 HOH HOH . M 5 HOH D 15 415 331 HOH HOH . M 5 HOH D 16 416 332 HOH HOH . M 5 HOH D 17 417 333 HOH HOH . M 5 HOH D 18 418 335 HOH HOH . M 5 HOH D 19 419 336 HOH HOH . M 5 HOH D 20 420 337 HOH HOH . M 5 HOH D 21 421 338 HOH HOH . M 5 HOH D 22 422 339 HOH HOH . M 5 HOH D 23 423 340 HOH HOH . M 5 HOH D 24 424 341 HOH HOH . M 5 HOH D 25 425 342 HOH HOH . M 5 HOH D 26 426 343 HOH HOH . M 5 HOH D 27 427 344 HOH HOH . M 5 HOH D 28 428 345 HOH HOH . M 5 HOH D 29 429 346 HOH HOH . M 5 HOH D 30 430 347 HOH HOH . M 5 HOH D 31 431 348 HOH HOH . M 5 HOH D 32 432 349 HOH HOH . M 5 HOH D 33 433 350 HOH HOH . M 5 HOH D 34 434 351 HOH HOH . M 5 HOH D 35 435 352 HOH HOH . M 5 HOH D 36 436 353 HOH HOH . M 5 HOH D 37 437 354 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . G 3 -1.931 20.804 197.538 1 38.79 ? C1 PEG 401 A 1 HETATM 2 O O1 PEG . . . G 3 -2.584 21.626 196.669 1 43.13 ? O1 PEG 401 A 1 HETATM 3 C C2 PEG . . . G 3 -0.584 21.383 197.886 1 38.97 ? C2 PEG 401 A 1 HETATM 4 O O2 PEG . . . G 3 0.432 20.406 197.673 1 39.47 ? O2 PEG 401 A 1 HETATM 5 C C3 PEG . . . G 3 1.488 20.835 196.803 1 38.09 ? C3 PEG 401 A 1 HETATM 6 C C4 PEG . . . G 3 2.375 21.857 197.46 1 44.63 ? C4 PEG 401 A 1 HETATM 7 O O4 PEG . . . G 3 3.547 21.209 197.875 1 44.37 ? O4 PEG 401 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 156 _model_server_stats.query_time_ms 1423 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 7 #