data_4HPT # _model_server_result.job_id DDpgvZCcCiauet1QYPybNA _model_server_result.datetime_utc '2024-11-26 14:38:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hpt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4HPT # _exptl.entry_id 4HPT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HPT _cell.length_a 71.545 _cell.length_b 79.06 _cell.length_c 80.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HPT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B C ALA 16 I ALA 20 1_555 B N SEP 17 I SEP 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 B C SEP 17 I SEP 21 1_555 B N ILE 18 I ILE 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 C N3B ANP . E ANP 401 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 C O2A ANP . E ANP 401 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 B O1P SEP 17 I SEP 21 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc4 C O1B ANP . E ANP 401 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 D MG MG . E MG 402 1_555 G O HOH . I HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc6 A OD1 ASN 171 E ASN 171 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc7 D MG MG . E MG 402 1_555 F O HOH . E HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 A OD2 ASP 184 E ASP 184 1_555 D MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 E MG MG . E MG 403 1_555 F O HOH . E HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc10 E MG MG . E MG 403 1_555 G O HOH . I HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc11 A OD1 ASP 184 E ASP 184 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc12 A OD2 ASP 184 E ASP 184 1_555 E MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HPT _atom_sites.fract_transf_matrix[1][1] 0.013977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012649 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP E 1 401 355 ANP ANP . D 4 MG E 1 402 1 MG MG . E 4 MG E 1 403 1 MG MG . F 5 HOH E 1 501 1 HOH HOH . F 5 HOH E 2 502 2 HOH HOH . F 5 HOH E 3 503 3 HOH HOH . F 5 HOH E 4 504 4 HOH HOH . F 5 HOH E 5 505 5 HOH HOH . F 5 HOH E 6 506 6 HOH HOH . F 5 HOH E 7 507 7 HOH HOH . F 5 HOH E 8 508 8 HOH HOH . F 5 HOH E 9 509 9 HOH HOH . F 5 HOH E 10 510 11 HOH HOH . F 5 HOH E 11 511 12 HOH HOH . F 5 HOH E 12 512 13 HOH HOH . F 5 HOH E 13 513 14 HOH HOH . F 5 HOH E 14 514 16 HOH HOH . F 5 HOH E 15 515 17 HOH HOH . F 5 HOH E 16 516 18 HOH HOH . F 5 HOH E 17 517 19 HOH HOH . F 5 HOH E 18 518 20 HOH HOH . F 5 HOH E 19 519 21 HOH HOH . F 5 HOH E 20 520 22 HOH HOH . F 5 HOH E 21 521 23 HOH HOH . F 5 HOH E 22 522 24 HOH HOH . F 5 HOH E 23 523 25 HOH HOH . F 5 HOH E 24 524 26 HOH HOH . F 5 HOH E 25 525 27 HOH HOH . F 5 HOH E 26 526 28 HOH HOH . F 5 HOH E 27 527 29 HOH HOH . F 5 HOH E 28 528 30 HOH HOH . F 5 HOH E 29 529 31 HOH HOH . F 5 HOH E 30 530 34 HOH HOH . F 5 HOH E 31 531 38 HOH HOH . F 5 HOH E 32 532 39 HOH HOH . F 5 HOH E 33 533 40 HOH HOH . F 5 HOH E 34 534 41 HOH HOH . F 5 HOH E 35 535 44 HOH HOH . F 5 HOH E 36 536 47 HOH HOH . F 5 HOH E 37 537 48 HOH HOH . F 5 HOH E 38 538 49 HOH HOH . F 5 HOH E 39 539 50 HOH HOH . F 5 HOH E 40 540 52 HOH HOH . F 5 HOH E 41 541 53 HOH HOH . F 5 HOH E 42 542 54 HOH HOH . F 5 HOH E 43 543 55 HOH HOH . F 5 HOH E 44 544 56 HOH HOH . F 5 HOH E 45 545 58 HOH HOH . F 5 HOH E 46 546 59 HOH HOH . F 5 HOH E 47 547 60 HOH HOH . F 5 HOH E 48 548 61 HOH HOH . F 5 HOH E 49 549 62 HOH HOH . F 5 HOH E 50 550 63 HOH HOH . F 5 HOH E 51 551 64 HOH HOH . F 5 HOH E 52 552 70 HOH HOH . F 5 HOH E 53 553 71 HOH HOH . F 5 HOH E 54 554 72 HOH HOH . F 5 HOH E 55 555 74 HOH HOH . F 5 HOH E 56 556 76 HOH HOH . F 5 HOH E 57 557 77 HOH HOH . F 5 HOH E 58 558 78 HOH HOH . F 5 HOH E 59 559 79 HOH HOH . F 5 HOH E 60 560 80 HOH HOH . F 5 HOH E 61 561 81 HOH HOH . F 5 HOH E 62 562 82 HOH HOH . F 5 HOH E 63 563 83 HOH HOH . F 5 HOH E 64 564 84 HOH HOH . F 5 HOH E 65 565 85 HOH HOH . F 5 HOH E 66 566 86 HOH HOH . F 5 HOH E 67 567 89 HOH HOH . F 5 HOH E 68 568 90 HOH HOH . F 5 HOH E 69 569 91 HOH HOH . F 5 HOH E 70 570 94 HOH HOH . F 5 HOH E 71 571 95 HOH HOH . F 5 HOH E 72 572 96 HOH HOH . F 5 HOH E 73 573 97 HOH HOH . F 5 HOH E 74 574 99 HOH HOH . F 5 HOH E 75 575 101 HOH HOH . F 5 HOH E 76 576 102 HOH HOH . F 5 HOH E 77 577 103 HOH HOH . F 5 HOH E 78 578 104 HOH HOH . F 5 HOH E 79 579 105 HOH HOH . F 5 HOH E 80 580 106 HOH HOH . F 5 HOH E 81 581 107 HOH HOH . F 5 HOH E 82 582 108 HOH HOH . F 5 HOH E 83 583 109 HOH HOH . F 5 HOH E 84 584 111 HOH HOH . F 5 HOH E 85 585 112 HOH HOH . F 5 HOH E 86 586 113 HOH HOH . F 5 HOH E 87 587 116 HOH HOH . F 5 HOH E 88 588 117 HOH HOH . F 5 HOH E 89 589 118 HOH HOH . F 5 HOH E 90 590 119 HOH HOH . F 5 HOH E 91 591 120 HOH HOH . F 5 HOH E 92 592 122 HOH HOH . F 5 HOH E 93 593 123 HOH HOH . F 5 HOH E 94 594 124 HOH HOH . F 5 HOH E 95 595 126 HOH HOH . F 5 HOH E 96 596 127 HOH HOH . F 5 HOH E 97 597 128 HOH HOH . F 5 HOH E 98 598 129 HOH HOH . F 5 HOH E 99 599 130 HOH HOH . F 5 HOH E 100 600 131 HOH HOH . F 5 HOH E 101 601 132 HOH HOH . F 5 HOH E 102 602 134 HOH HOH . F 5 HOH E 103 603 135 HOH HOH . F 5 HOH E 104 604 138 HOH HOH . F 5 HOH E 105 605 139 HOH HOH . F 5 HOH E 106 606 140 HOH HOH . F 5 HOH E 107 607 141 HOH HOH . F 5 HOH E 108 608 142 HOH HOH . F 5 HOH E 109 609 143 HOH HOH . F 5 HOH E 110 610 145 HOH HOH . F 5 HOH E 111 611 147 HOH HOH . F 5 HOH E 112 612 148 HOH HOH . F 5 HOH E 113 613 149 HOH HOH . F 5 HOH E 114 614 151 HOH HOH . F 5 HOH E 115 615 152 HOH HOH . F 5 HOH E 116 616 154 HOH HOH . F 5 HOH E 117 617 156 HOH HOH . F 5 HOH E 118 618 157 HOH HOH . F 5 HOH E 119 619 158 HOH HOH . F 5 HOH E 120 620 161 HOH HOH . F 5 HOH E 121 621 164 HOH HOH . F 5 HOH E 122 622 165 HOH HOH . F 5 HOH E 123 623 166 HOH HOH . F 5 HOH E 124 624 167 HOH HOH . F 5 HOH E 125 625 168 HOH HOH . F 5 HOH E 126 626 169 HOH HOH . F 5 HOH E 127 627 170 HOH HOH . F 5 HOH E 128 628 171 HOH HOH . F 5 HOH E 129 629 172 HOH HOH . F 5 HOH E 130 630 173 HOH HOH . F 5 HOH E 131 631 174 HOH HOH . F 5 HOH E 132 632 175 HOH HOH . F 5 HOH E 133 633 176 HOH HOH . F 5 HOH E 134 634 177 HOH HOH . F 5 HOH E 135 635 178 HOH HOH . F 5 HOH E 136 636 179 HOH HOH . F 5 HOH E 137 637 181 HOH HOH . F 5 HOH E 138 638 182 HOH HOH . F 5 HOH E 139 639 183 HOH HOH . F 5 HOH E 140 640 186 HOH HOH . F 5 HOH E 141 641 187 HOH HOH . F 5 HOH E 142 642 189 HOH HOH . F 5 HOH E 143 643 190 HOH HOH . F 5 HOH E 144 644 191 HOH HOH . F 5 HOH E 145 645 192 HOH HOH . F 5 HOH E 146 646 193 HOH HOH . F 5 HOH E 147 647 194 HOH HOH . F 5 HOH E 148 648 195 HOH HOH . F 5 HOH E 149 649 196 HOH HOH . F 5 HOH E 150 650 197 HOH HOH . F 5 HOH E 151 651 198 HOH HOH . F 5 HOH E 152 652 199 HOH HOH . F 5 HOH E 153 653 200 HOH HOH . F 5 HOH E 154 654 201 HOH HOH . F 5 HOH E 155 655 202 HOH HOH . F 5 HOH E 156 656 203 HOH HOH . F 5 HOH E 157 657 204 HOH HOH . F 5 HOH E 158 658 205 HOH HOH . F 5 HOH E 159 659 206 HOH HOH . G 5 HOH I 1 101 10 HOH HOH . G 5 HOH I 2 102 32 HOH HOH . G 5 HOH I 3 103 33 HOH HOH . G 5 HOH I 4 104 36 HOH HOH . G 5 HOH I 5 105 57 HOH HOH . G 5 HOH I 6 106 65 HOH HOH . G 5 HOH I 7 107 66 HOH HOH . G 5 HOH I 8 108 67 HOH HOH . G 5 HOH I 9 109 98 HOH HOH . G 5 HOH I 10 110 110 HOH HOH . G 5 HOH I 11 111 125 HOH HOH . G 5 HOH I 12 112 133 HOH HOH . G 5 HOH I 13 113 136 HOH HOH . G 5 HOH I 14 114 137 HOH HOH . G 5 HOH I 15 115 159 HOH HOH . G 5 HOH I 16 116 160 HOH HOH . G 5 HOH I 17 117 184 HOH HOH . G 5 HOH I 18 118 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . . . C 3 21.978 -10.38 -0.536 1 37.08 ? PB ANP 401 E 1 HETATM 2 O O1B ANP . . . C 3 21.693 -10.088 -1.99 1 38.86 ? O1B ANP 401 E 1 HETATM 3 O O2B ANP . . . C 3 21.318 -11.585 0.085 1 39.63 ? O2B ANP 401 E 1 HETATM 4 N N3B ANP . . . C 3 21.622 -9.071 0.337 1 34.39 ? N3B ANP 401 E 1 HETATM 5 P PA ANP . . . C 3 24.688 -9.745 0.158 1 29.81 ? PA ANP 401 E 1 HETATM 6 O O1A ANP . . . C 3 25.844 -9.788 -0.807 1 31.32 ? O1A ANP 401 E 1 HETATM 7 O O2A ANP . . . C 3 24.139 -8.411 0.615 1 30.85 ? O2A ANP 401 E 1 HETATM 8 O O3A ANP . . . C 3 23.559 -10.726 -0.44 1 34.25 ? O3A ANP 401 E 1 HETATM 9 O O5' ANP . . . C 3 25.085 -10.498 1.511 1 29.36 ? O5' ANP 401 E 1 HETATM 10 C C5' ANP . . . C 3 24.137 -10.61 2.573 1 26.91 ? C5' ANP 401 E 1 HETATM 11 C C4' ANP . . . C 3 24.858 -10.33 3.883 1 27.18 ? C4' ANP 401 E 1 HETATM 12 O O4' ANP . . . C 3 25.918 -11.275 4.112 1 26.32 ? O4' ANP 401 E 1 HETATM 13 C C3' ANP . . . C 3 25.517 -8.95 3.938 1 25.98 ? C3' ANP 401 E 1 HETATM 14 O O3' ANP . . . C 3 24.596 -7.904 4.299 1 25.39 ? O3' ANP 401 E 1 HETATM 15 C C2' ANP . . . C 3 26.621 -9.175 4.959 1 27.66 ? C2' ANP 401 E 1 HETATM 16 O O2' ANP . . . C 3 26.103 -9.097 6.288 1 27.29 ? O2' ANP 401 E 1 HETATM 17 C C1' ANP . . . C 3 27.047 -10.62 4.71 1 28.02 ? C1' ANP 401 E 1 HETATM 18 N N9 ANP . . . C 3 28.199 -10.581 3.772 1 28.79 ? N9 ANP 401 E 1 HETATM 19 C C8 ANP . . . C 3 28.098 -10.491 2.431 1 26.31 ? C8 ANP 401 E 1 HETATM 20 N N7 ANP . . . C 3 29.316 -10.459 1.854 1 29.39 ? N7 ANP 401 E 1 HETATM 21 C C5 ANP . . . C 3 30.231 -10.541 2.841 1 30.84 ? C5 ANP 401 E 1 HETATM 22 C C6 ANP . . . C 3 31.706 -10.551 2.91 1 33.58 ? C6 ANP 401 E 1 HETATM 23 N N6 ANP . . . C 3 32.417 -10.483 1.759 1 32.99 ? N6 ANP 401 E 1 HETATM 24 N N1 ANP . . . C 3 32.297 -10.637 4.136 1 37.78 ? N1 ANP 401 E 1 HETATM 25 C C2 ANP . . . C 3 31.564 -10.707 5.269 1 37.73 ? C2 ANP 401 E 1 HETATM 26 N N3 ANP . . . C 3 30.209 -10.69 5.268 1 34.9 ? N3 ANP 401 E 1 HETATM 27 C C4 ANP . . . C 3 29.498 -10.612 4.11 1 31.21 ? C4 ANP 401 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #