data_4HQJ # _model_server_result.job_id 57fdKz1SikbBPOqv7yRPgQ _model_server_result.datetime_utc '2024-11-23 22:19:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":1108}' # _entry.id 4HQJ # _exptl.entry_id 4HQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HQJ _cell.length_a 109.073 _cell.length_b 219.578 _cell.length_c 261.958 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N 1 1 D,E,F,O,P,Q,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 N N N ? 8 U N N ? 8 V N N ? 8 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 126 D CYS 126 1_555 E SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 E SG CYS 213 D CYS 213 1_555 E SG CYS 276 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O VAL 327 A VAL 322 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A O ALA 328 A ALA 323 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc3 A O VAL 330 A VAL 325 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc4 A OE2 GLU 332 A GLU 327 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 A OD2 ASP 374 A ASP 369 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 A O THR 376 A THR 371 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc7 A OD2 ASP 715 A ASP 710 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc8 A OG1 THR 779 A THR 774 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 A OG SER 780 A SER 775 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 A OD1 ASN 781 A ASN 776 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc11 A OE2 GLU 784 A GLU 779 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc12 A OD2 ASP 809 A ASP 804 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc13 A OD1 ASP 809 A ASP 804 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc14 A OD1 ASP 809 A ASP 804 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc15 A OE1 GLN 859 A GLN 854 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc16 A OE1 GLN 928 A GLN 923 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc17 A OD2 ASP 931 A ASP 926 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc18 D O VAL 327 C VAL 322 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc19 D O ALA 328 C ALA 323 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc20 D O ALA 328 C ALA 323 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? metalc ? metalc21 D O VAL 330 C VAL 325 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc22 D OE2 GLU 332 C GLU 327 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc23 D OD2 ASP 374 C ASP 369 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc24 D O THR 376 C THR 371 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc25 D OD2 ASP 715 C ASP 710 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc26 D OG1 THR 779 C THR 774 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc27 D OG SER 780 C SER 775 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc28 D OD1 ASN 781 C ASN 776 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc29 D OE2 GLU 784 C GLU 779 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc30 D OD2 ASP 809 C ASP 804 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc31 D OD1 ASP 809 C ASP 804 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc32 D OD1 ASP 809 C ASP 804 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc33 D OE1 GLN 859 C GLN 854 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc34 D OE1 GLN 928 C GLN 923 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc35 D OD2 ASP 931 C ASP 926 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 118 n n C1 C10 CLR sing 119 n n C1 H11 CLR sing 120 n n C1 H12 CLR sing 121 n n C2 C3 CLR sing 122 n n C2 H21 CLR sing 123 n n C2 H22 CLR sing 124 n n C3 C4 CLR sing 125 n n C3 O1 CLR sing 126 n n C3 H3 CLR sing 127 n n C4 C5 CLR sing 128 n n C4 H41 CLR sing 129 n n C4 H42 CLR sing 130 n n C5 C6 CLR doub 131 n n C5 C10 CLR sing 132 n n C6 C7 CLR sing 133 n n C6 H6 CLR sing 134 n n C7 C8 CLR sing 135 n n C7 H71 CLR sing 136 n n C7 H72 CLR sing 137 n n C8 C9 CLR sing 138 n n C8 C14 CLR sing 139 n n C8 H8 CLR sing 140 n n C9 C10 CLR sing 141 n n C9 C11 CLR sing 142 n n C9 H9 CLR sing 143 n n C10 C19 CLR sing 144 n n C11 C12 CLR sing 145 n n C11 H111 CLR sing 146 n n C11 H112 CLR sing 147 n n C12 C13 CLR sing 148 n n C12 H121 CLR sing 149 n n C12 H122 CLR sing 150 n n C13 C14 CLR sing 151 n n C13 C17 CLR sing 152 n n C13 C18 CLR sing 153 n n C14 C15 CLR sing 154 n n C14 H14 CLR sing 155 n n C15 C16 CLR sing 156 n n C15 H151 CLR sing 157 n n C15 H152 CLR sing 158 n n C16 C17 CLR sing 159 n n C16 H161 CLR sing 160 n n C16 H162 CLR sing 161 n n C17 C20 CLR sing 162 n n C17 H17 CLR sing 163 n n C18 H181 CLR sing 164 n n C18 H182 CLR sing 165 n n C18 H183 CLR sing 166 n n C19 H191 CLR sing 167 n n C19 H192 CLR sing 168 n n C19 H193 CLR sing 169 n n C20 C21 CLR sing 170 n n C20 C22 CLR sing 171 n n C20 H20 CLR sing 172 n n C21 H211 CLR sing 173 n n C21 H212 CLR sing 174 n n C21 H213 CLR sing 175 n n C22 C23 CLR sing 176 n n C22 H221 CLR sing 177 n n C22 H222 CLR sing 178 n n C23 C24 CLR sing 179 n n C23 H231 CLR sing 180 n n C23 H232 CLR sing 181 n n C24 C25 CLR sing 182 n n C24 H241 CLR sing 183 n n C24 H242 CLR sing 184 n n C25 C26 CLR sing 185 n n C25 C27 CLR sing 186 n n C25 H25 CLR sing 187 n n C26 H261 CLR sing 188 n n C26 H262 CLR sing 189 n n C26 H263 CLR sing 190 n n C27 H271 CLR sing 191 n n C27 H272 CLR sing 192 n n C27 H273 CLR sing 193 n n O1 H1 CLR sing 194 n n # _atom_sites.entry_id 4HQJ _atom_sites.fract_transf_matrix[1][1] 0.009168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ADP A 1 1101 1017 ADP ADP . H 5 ALF A 1 1102 1018 ALF ALF . I 6 MG A 1 1103 1019 MG MG . J 7 NA A 1 1104 1021 NA NA . K 7 NA A 1 1105 1022 NA NA . L 7 NA A 1 1106 1023 NA NA . M 8 CLR A 1 1107 401 CLR CLR . N 8 CLR A 1 1108 402 CLR CLR . O 4 ADP C 1 1101 1017 ADP ADP . P 5 ALF C 1 1102 1018 ALF ALF . Q 6 MG C 1 1103 1019 MG MG . R 7 NA C 1 1104 1021 NA NA . S 7 NA C 1 1105 1022 NA NA . T 7 NA C 1 1106 1023 NA NA . U 8 CLR C 1 1107 401 CLR CLR . V 8 CLR C 1 1108 402 CLR CLR . W 8 CLR D 1 400 400 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . N 8 -12.009 28.222 76.274 1 247.65 ? C1 CLR 1108 A 1 HETATM 2 C C2 CLR . . . N 8 -11.54 28.612 77.673 1 241.41 ? C2 CLR 1108 A 1 HETATM 3 C C3 CLR . . . N 8 -10.198 27.948 77.93 1 237.93 ? C3 CLR 1108 A 1 HETATM 4 C C4 CLR . . . N 8 -9.185 28.559 76.97 1 242.67 ? C4 CLR 1108 A 1 HETATM 5 C C5 CLR . . . N 8 -9.596 28.196 75.598 1 249.21 ? C5 CLR 1108 A 1 HETATM 6 C C6 CLR . . . N 8 -8.718 27.55 74.849 1 252.39 ? C6 CLR 1108 A 1 HETATM 7 C C7 CLR . . . N 8 -8.982 27.108 73.466 1 258.74 ? C7 CLR 1108 A 1 HETATM 8 C C8 CLR . . . N 8 -10.218 27.784 72.881 1 261.67 ? C8 CLR 1108 A 1 HETATM 9 C C9 CLR . . . N 8 -11.37 27.871 73.887 1 257.55 ? C9 CLR 1108 A 1 HETATM 10 C C10 CLR . . . N 8 -10.964 28.592 75.176 1 252.04 ? C10 CLR 1108 A 1 HETATM 11 C C11 CLR . . . N 8 -12.563 28.561 73.25 1 261.91 ? C11 CLR 1108 A 1 HETATM 12 C C12 CLR . . . N 8 -13.044 27.762 72.072 1 267.16 ? C12 CLR 1108 A 1 HETATM 13 C C13 CLR . . . N 8 -11.939 27.652 71.047 1 270.46 ? C13 CLR 1108 A 1 HETATM 14 C C14 CLR . . . N 8 -10.776 26.92 71.744 1 266.82 ? C14 CLR 1108 A 1 HETATM 15 C C15 CLR . . . N 8 -9.847 26.531 70.596 1 271.25 ? C15 CLR 1108 A 1 HETATM 16 C C16 CLR . . . N 8 -10.841 26.043 69.526 1 275.83 ? C16 CLR 1108 A 1 HETATM 17 C C17 CLR . . . N 8 -12.232 26.659 69.868 1 275.31 ? C17 CLR 1108 A 1 HETATM 18 C C18 CLR . . . N 8 -11.444 29.065 70.575 1 272.79 ? C18 CLR 1108 A 1 HETATM 19 C C19 CLR . . . N 8 -10.93 30.095 74.955 1 254.21 ? C19 CLR 1108 A 1 HETATM 20 C C20 CLR . . . N 8 -12.963 27.18 68.579 1 281.26 ? C20 CLR 1108 A 1 HETATM 21 C C21 CLR . . . N 8 -14.149 28.11 68.841 1 281.93 ? C21 CLR 1108 A 1 HETATM 22 C C22 CLR . . . N 8 -13.432 25.982 67.733 1 284.26 ? C22 CLR 1108 A 1 HETATM 23 C C23 CLR . . . N 8 -14.838 25.518 68.157 1 284.54 ? C23 CLR 1108 A 1 HETATM 24 C C24 CLR . . . N 8 -15.829 25.655 67.004 1 289.39 ? C24 CLR 1108 A 1 HETATM 25 C C25 CLR . . . N 8 -16.979 26.605 67.381 1 290.47 ? C25 CLR 1108 A 1 HETATM 26 C C26 CLR . . . N 8 -17.155 27.732 66.369 1 295.45 ? C26 CLR 1108 A 1 HETATM 27 C C27 CLR . . . N 8 -18.291 25.844 67.506 1 290.62 ? C27 CLR 1108 A 1 HETATM 28 O O1 CLR . . . N 8 -9.835 28.182 79.253 1 233.91 ? O1 CLR 1108 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #