data_4HQJ # _model_server_result.job_id -5_4HFIcfGWZOpgtwi85Qw _model_server_result.datetime_utc '2024-11-02 09:24:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":400}' # _entry.id 4HQJ # _exptl.entry_id 4HQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4HQJ _cell.length_a 109.073 _cell.length_b 219.578 _cell.length_c 261.958 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N 1 1 D,E,F,O,P,Q,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 M N N ? 8 N N N ? 8 U N N ? 8 V N N ? 8 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 E SG CYS 126 D CYS 126 1_555 E SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf4 E SG CYS 213 D CYS 213 1_555 E SG CYS 276 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 D O THR 376 C THR 371 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc2 A OD2 ASP 715 A ASP 710 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 D OD2 ASP 715 C ASP 710 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 D OD2 ASP 374 C ASP 369 1_555 Q MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 A O THR 376 A THR 371 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc6 A OD2 ASP 374 A ASP 369 1_555 I MG MG . A MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 D OE1 GLN 928 C GLN 923 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A OG1 THR 779 A THR 774 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc9 D OE1 GLN 859 C GLN 854 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 A OD2 ASP 931 A ASP 926 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc11 A OG SER 780 A SER 775 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc12 D O ALA 328 C ALA 323 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc13 D OD1 ASP 809 C ASP 804 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc14 A OD1 ASN 781 A ASN 776 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc15 D OD2 ASP 809 C ASP 804 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc16 D OE2 GLU 784 C GLU 779 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc17 D O VAL 327 C VAL 322 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc18 D OD1 ASN 781 C ASN 776 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc19 A OE2 GLU 784 A GLU 779 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc20 A OD1 ASP 809 A ASP 804 1_555 K NA NA . A NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc21 A O ALA 328 A ALA 323 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 A O VAL 330 A VAL 325 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc23 A OD2 ASP 809 A ASP 804 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc24 D OG SER 780 C SER 775 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc25 D O VAL 330 C VAL 325 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc26 A OE2 GLU 332 A GLU 327 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc27 A O VAL 327 A VAL 322 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc28 A OE1 GLN 859 A GLN 854 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc29 D OD2 ASP 931 C ASP 926 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc30 A OE1 GLN 928 A GLN 923 1_555 L NA NA . A NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc31 D OE2 GLU 332 C GLU 327 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc32 D OG1 THR 779 C THR 774 1_555 T NA NA . C NA 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc33 D OD1 ASP 809 C ASP 804 1_555 R NA NA . C NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc34 A OD1 ASP 809 A ASP 804 1_555 J NA NA . A NA 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc35 D O ALA 328 C ALA 323 1_555 S NA NA . C NA 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.169 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4HQJ _atom_sites.fract_transf_matrix[1][1] 0.009168 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ADP A 1 1101 1017 ADP ADP . H 5 ALF A 1 1102 1018 ALF ALF . I 6 MG A 1 1103 1019 MG MG . J 7 NA A 1 1104 1021 NA NA . K 7 NA A 1 1105 1022 NA NA . L 7 NA A 1 1106 1023 NA NA . M 8 CLR A 1 1107 401 CLR CLR . N 8 CLR A 1 1108 402 CLR CLR . O 4 ADP C 1 1101 1017 ADP ADP . P 5 ALF C 1 1102 1018 ALF ALF . Q 6 MG C 1 1103 1019 MG MG . R 7 NA C 1 1104 1021 NA NA . S 7 NA C 1 1105 1022 NA NA . T 7 NA C 1 1106 1023 NA NA . U 8 CLR C 1 1107 401 CLR CLR . V 8 CLR C 1 1108 402 CLR CLR . W 8 CLR D 1 400 400 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . W 8 22.994 104.972 65.428 1 292.93 ? C1 CLR 400 D 1 HETATM 2 C C2 CLR . . . W 8 23.958 105.398 64.342 1 291.19 ? C2 CLR 400 D 1 HETATM 3 C C3 CLR . . . W 8 23.444 104.837 63.021 1 290.57 ? C3 CLR 400 D 1 HETATM 4 C C4 CLR . . . W 8 22.083 105.485 62.69 1 291.81 ? C4 CLR 400 D 1 HETATM 5 C C5 CLR . . . W 8 21.137 105.324 63.836 1 292.89 ? C5 CLR 400 D 1 HETATM 6 C C6 CLR . . . W 8 19.914 104.896 63.551 1 294.34 ? C6 CLR 400 D 1 HETATM 7 C C7 CLR . . . W 8 18.847 104.69 64.553 1 294.83 ? C7 CLR 400 D 1 HETATM 8 C C8 CLR . . . W 8 19.166 105.442 65.843 1 293.92 ? C8 CLR 400 D 1 HETATM 9 C C9 CLR . . . W 8 20.635 105.167 66.274 1 293.71 ? C9 CLR 400 D 1 HETATM 10 C C10 CLR . . . W 8 21.641 105.66 65.205 1 292.31 ? C10 CLR 400 D 1 HETATM 11 C C11 CLR . . . W 8 20.962 105.74 67.659 1 294.07 ? C11 CLR 400 D 1 HETATM 12 C C12 CLR . . . W 8 20.053 105.102 68.7 1 293.97 ? C12 CLR 400 D 1 HETATM 13 C C13 CLR . . . W 8 18.606 105.513 68.381 1 293.11 ? C13 CLR 400 D 1 HETATM 14 C C14 CLR . . . W 8 18.226 104.936 66.965 1 294.77 ? C14 CLR 400 D 1 HETATM 15 C C15 CLR . . . W 8 16.706 105.194 66.852 1 295.41 ? C15 CLR 400 D 1 HETATM 16 C C16 CLR . . . W 8 16.208 104.909 68.296 1 294.83 ? C16 CLR 400 D 1 HETATM 17 C C17 CLR . . . W 8 17.466 104.894 69.245 1 294.01 ? C17 CLR 400 D 1 HETATM 18 C C18 CLR . . . W 8 18.493 107.052 68.403 1 294.86 ? C18 CLR 400 D 1 HETATM 19 C C19 CLR . . . W 8 21.829 107.176 65.274 1 290.69 ? C19 CLR 400 D 1 HETATM 20 C C20 CLR . . . W 8 17.212 105.604 70.62 1 292.72 ? C20 CLR 400 D 1 HETATM 21 C C21 CLR . . . W 8 18.303 105.26 71.657 1 294.14 ? C21 CLR 400 D 1 HETATM 22 C C22 CLR . . . W 8 15.795 105.289 71.167 1 292.55 ? C22 CLR 400 D 1 HETATM 23 C C23 CLR . . . W 8 15.84 104.517 72.508 1 293.69 ? C23 CLR 400 D 1 HETATM 24 C C24 CLR . . . W 8 15.308 105.379 73.653 1 291.67 ? C24 CLR 400 D 1 HETATM 25 C C25 CLR . . . W 8 16.149 105.208 74.932 1 293.4 ? C25 CLR 400 D 1 HETATM 26 C C26 CLR . . . W 8 16.128 106.46 75.802 1 291.43 ? C26 CLR 400 D 1 HETATM 27 C C27 CLR . . . W 8 15.648 104.029 75.765 1 295.69 ? C27 CLR 400 D 1 HETATM 28 O O1 CLR . . . W 8 24.378 105.155 62.034 1 288.81 ? O1 CLR 400 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 28 #