data_4HRA # _model_server_result.job_id wZmy6CDq8jPnTkEdIL_LJw _model_server_result.datetime_utc '2024-10-11 02:17:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4hra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4HRA # _exptl.entry_id 4HRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 562.706 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-[{cis-3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4HRA _cell.length_a 154.43 _cell.length_b 154.43 _cell.length_c 47.52 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 N8 O3' _chem_comp.formula_weight 562.706 _chem_comp.id EP6 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-[{cis-3-[2-(5-tert-butyl-1H-benzimidazol-2-yl)ethyl]cyclobutyl}(propan-2-yl)amino]-5'-deoxyadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAH CBJ EP6 sing 83 n n CBJ CBI EP6 sing 84 n n CBJ CBL EP6 sing 85 n n N6 C6 EP6 sing 86 n n OAG CBI EP6 sing 87 n n C6 C5 EP6 doub 88 n y C6 N1 EP6 sing 89 n y N7 C5 EP6 sing 90 n y N7 C8 EP6 doub 91 n y C5 C4 EP6 sing 92 n y N1 C2 EP6 doub 93 n y CBI CBK EP6 sing 94 n n C8 N9 EP6 sing 95 n y C4 N9 EP6 sing 96 n y C4 N3 EP6 doub 97 n y C2 N3 EP6 sing 98 n y N9 CBL EP6 sing 99 n n CBL OAX EP6 sing 100 n n CBK OAX EP6 sing 101 n n CBK CAR EP6 sing 102 n n CAR NBM EP6 sing 103 n n NBM CBH EP6 sing 104 n n NBM CBF EP6 sing 105 n n CAP CBH EP6 sing 106 n n CAP CBG EP6 sing 107 n n CBH CAQ EP6 sing 108 n n CAB CBF EP6 sing 109 n n CBF CAA EP6 sing 110 n n CBG CAQ EP6 sing 111 n n CBG CAO EP6 sing 112 n n CAO CAN EP6 sing 113 n n CAN CBA EP6 sing 114 n n CBA NAW EP6 doub 115 n y CBA NAV EP6 sing 116 n y NAW CBC EP6 sing 117 n y NAV CBB EP6 sing 118 n y CBC CBB EP6 doub 119 n y CBC CAM EP6 sing 120 n y CBB CAK EP6 sing 121 n y CAM CAZ EP6 doub 122 n y CAK CAI EP6 doub 123 n y CAC CBO EP6 sing 124 n n CAZ CAI EP6 sing 125 n y CAZ CBO EP6 sing 126 n n CBO CAD EP6 sing 127 n n CBO CAE EP6 sing 128 n n C2 H1 EP6 sing 129 n n C8 H2 EP6 sing 130 n n NAV H3 EP6 sing 131 n n CAK H4 EP6 sing 132 n n CAI H5 EP6 sing 133 n n CAD H6 EP6 sing 134 n n CAD H7 EP6 sing 135 n n CAD H8 EP6 sing 136 n n CAE H9 EP6 sing 137 n n CAE H10 EP6 sing 138 n n CAE H11 EP6 sing 139 n n CAC H12 EP6 sing 140 n n CAC H13 EP6 sing 141 n n CAC H14 EP6 sing 142 n n CAM H15 EP6 sing 143 n n CAN H17 EP6 sing 144 n n CAN H18 EP6 sing 145 n n CAO H19 EP6 sing 146 n n CAO H20 EP6 sing 147 n n CBG H21 EP6 sing 148 n n CAQ H22 EP6 sing 149 n n CAQ H23 EP6 sing 150 n n CAP H24 EP6 sing 151 n n CAP H25 EP6 sing 152 n n CBH H26 EP6 sing 153 n n CBF H28 EP6 sing 154 n n CAB H29 EP6 sing 155 n n CAB H30 EP6 sing 156 n n CAB H31 EP6 sing 157 n n CAA H32 EP6 sing 158 n n CAA H33 EP6 sing 159 n n CAA H34 EP6 sing 160 n n CAR H35 EP6 sing 161 n n CAR H36 EP6 sing 162 n n CBK H37 EP6 sing 163 n n CBI H38 EP6 sing 164 n n OAG H39 EP6 sing 165 n n CBJ H40 EP6 sing 166 n n OAH H41 EP6 sing 167 n n CBL H42 EP6 sing 168 n n N6 H43 EP6 sing 169 n n N6 H44 EP6 sing 170 n n # _atom_sites.entry_id 4HRA _atom_sites.fract_transf_matrix[1][1] 0.006475 _atom_sites.fract_transf_matrix[1][2] 0.003739 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007477 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EP6 A 1 501 1 EP6 EPZ . C 3 SO4 A 1 502 1 SO4 SO4 . D 3 SO4 A 1 503 2 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 EP6 . . . B 2 -17.38 -59.193 -16.286 1 117.63 ? C2 EP6 501 A 1 HETATM 2 C C4 EP6 . . . B 2 -18.32 -61.309 -16.317 1 105.54 ? C4 EP6 501 A 1 HETATM 3 C C5 EP6 . . . B 2 -17.08 -61.853 -16.578 1 105.74 ? C5 EP6 501 A 1 HETATM 4 C C6 EP6 . . . B 2 -15.992 -61.007 -16.693 1 110.66 ? C6 EP6 501 A 1 HETATM 5 C C8 EP6 . . . B 2 -18.507 -63.448 -16.477 1 108.01 ? C8 EP6 501 A 1 HETATM 6 N NAV EP6 . . . B 2 -23.942 -62.163 -7.748 1 90.41 ? NAV EP6 501 A 1 HETATM 7 C CBB EP6 . . . B 2 -23.525 -63.103 -6.902 1 91.87 ? CBB EP6 501 A 1 HETATM 8 C CAK EP6 . . . B 2 -22.413 -63.206 -6.061 1 89.95 ? CAK EP6 501 A 1 HETATM 9 C CAI EP6 . . . B 2 -22.24 -64.343 -5.27 1 85.7 ? CAI EP6 501 A 1 HETATM 10 C CAZ EP6 . . . B 2 -23.179 -65.378 -5.313 1 87.47 ? CAZ EP6 501 A 1 HETATM 11 C CBO EP6 . . . B 2 -23 -66.633 -4.438 1 90.17 ? CBO EP6 501 A 1 HETATM 12 C CAD EP6 . . . B 2 -21.761 -66.463 -3.554 1 89.24 ? CAD EP6 501 A 1 HETATM 13 C CAE EP6 . . . B 2 -24.233 -66.821 -3.548 1 90.72 ? CAE EP6 501 A 1 HETATM 14 C CAC EP6 . . . B 2 -22.845 -67.865 -5.336 1 87.15 ? CAC EP6 501 A 1 HETATM 15 C CAM EP6 . . . B 2 -24.292 -65.264 -6.151 1 87.76 ? CAM EP6 501 A 1 HETATM 16 C CBC EP6 . . . B 2 -24.464 -64.13 -6.944 1 91.4 ? CBC EP6 501 A 1 HETATM 17 N NAW EP6 . . . B 2 -25.407 -63.769 -7.814 1 90.17 ? NAW EP6 501 A 1 HETATM 18 C CBA EP6 . . . B 2 -25.09 -62.569 -8.29 1 87.41 ? CBA EP6 501 A 1 HETATM 19 C CAN EP6 . . . B 2 -25.896 -61.805 -9.321 1 85.99 ? CAN EP6 501 A 1 HETATM 20 C CAO EP6 . . . B 2 -25.164 -61.905 -10.658 1 90.95 ? CAO EP6 501 A 1 HETATM 21 C CBG EP6 . . . B 2 -25.506 -63.192 -11.413 1 92.94 ? CBG EP6 501 A 1 HETATM 22 C CAQ EP6 . . . B 2 -24.515 -64.31 -11.084 1 92.66 ? CAQ EP6 501 A 1 HETATM 23 C CAP EP6 . . . B 2 -24.891 -63.122 -12.809 1 91.22 ? CAP EP6 501 A 1 HETATM 24 C CBH EP6 . . . B 2 -24.308 -64.523 -12.592 1 95.74 ? CBH EP6 501 A 1 HETATM 25 N NBM EP6 . . . B 2 -22.867 -64.538 -12.953 1 99.91 ? NBM EP6 501 A 1 HETATM 26 C CBF EP6 . . . B 2 -22.048 -65.451 -12.109 1 99.89 ? CBF EP6 501 A 1 HETATM 27 C CAB EP6 . . . B 2 -22.189 -66.931 -12.511 1 89.71 ? CAB EP6 501 A 1 HETATM 28 C CAA EP6 . . . B 2 -20.58 -64.986 -12.106 1 104.16 ? CAA EP6 501 A 1 HETATM 29 C CAR EP6 . . . B 2 -22.648 -64.691 -14.411 1 100.67 ? CAR EP6 501 A 1 HETATM 30 C CBK EP6 . . . B 2 -22.34 -63.315 -15.02 1 104.55 ? CBK EP6 501 A 1 HETATM 31 O OAX EP6 . . . B 2 -20.925 -63.128 -14.95 1 101.5 ? OAX EP6 501 A 1 HETATM 32 C CBI EP6 . . . B 2 -22.711 -63.25 -16.509 1 104.56 ? CBI EP6 501 A 1 HETATM 33 O OAG EP6 . . . B 2 -23.741 -62.278 -16.695 1 105.13 ? OAG EP6 501 A 1 HETATM 34 C CBJ EP6 . . . B 2 -21.442 -62.75 -17.182 1 106.68 ? CBJ EP6 501 A 1 HETATM 35 O OAH EP6 . . . B 2 -21.757 -61.69 -18.098 1 101.69 ? OAH EP6 501 A 1 HETATM 36 C CBL EP6 . . . B 2 -20.634 -62.211 -16.004 1 104.74 ? CBL EP6 501 A 1 HETATM 37 N N9 EP6 . . . B 2 -19.181 -62.315 -16.263 1 106.86 ? N9 EP6 501 A 1 HETATM 38 N N7 EP6 . . . B 2 -17.223 -63.166 -16.669 1 107.86 ? N7 EP6 501 A 1 HETATM 39 N N3 EP6 . . . B 2 -18.442 -59.98 -16.178 1 113.55 ? N3 EP6 501 A 1 HETATM 40 N N1 EP6 . . . B 2 -16.175 -59.685 -16.541 1 114.69 ? N1 EP6 501 A 1 HETATM 41 N N6 EP6 . . . B 2 -14.785 -61.507 -16.939 1 115.13 ? N6 EP6 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #